HEADER IMMUNE SYSTEM 09-MAY-05 1ZLS OBSLTE 21-NOV-18 1ZLS 6MSY TITLE FAB 2G12 + MAN4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 2G12, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB, LIGHT CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB 2G12, HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: FAB, HEAVY CHAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 9 EXPRESSION_SYSTEM_CELL: DHFR; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 17 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 18 EXPRESSION_SYSTEM_CELL: DHFR KEYWDS HIV NEUTRALIZING ANTIBODY; ANTI-CARBOHYDRATE; DOMAIN-SWAPPING, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.A.CALARESE,H.-K.LEE,M.D.BEST,R.D.ASTRONOMO,R.L.STANFIELD, AUTHOR 2 D.R.BURTON,C.H.WONG,I.A.WILSON REVDAT 5 21-NOV-18 1ZLS 1 OBSLTE REVDAT 4 13-JUL-11 1ZLS 1 VERSN REVDAT 3 24-FEB-09 1ZLS 1 VERSN REVDAT 2 25-OCT-05 1ZLS 1 JRNL REVDAT 1 09-AUG-05 1ZLS 0 JRNL AUTH D.A.CALARESE,H.-K.LEE,C.Y.HUANG,M.D.BEST,R.D.ASTRONOMO, JRNL AUTH 2 R.L.STANFIELD,H.KATINGER,D.R.BURTON,C.H.WONG,I.A.WILSON JRNL TITL DISSECTION OF THE CARBOHYDRATE SPECIFICITY OF THE BROADLY JRNL TITL 2 NEUTRALIZING ANTI-HIV-1 ANTIBODY 2G12 JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 13372 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16174734 JRNL DOI 10.1073/PNAS.0505763102 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 35942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.284 REMARK 3 R VALUE (WORKING SET) : 0.281 REMARK 3 FREE R VALUE : 0.326 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2453 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.84000 REMARK 3 B22 (A**2) : -3.64000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.090 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3331 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4536 ; 1.807 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 6.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;35.923 ;24.016 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;17.717 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2448 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1291 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 197 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2137 ; 0.861 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3392 ; 1.341 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1356 ; 2.316 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1144 ; 3.226 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 2 L 108 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2020 -22.4210 3.5318 REMARK 3 T TENSOR REMARK 3 T11: -0.3449 T22: -0.1630 REMARK 3 T33: -0.3137 T12: -0.0875 REMARK 3 T13: 0.0254 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.6771 L22: 3.3131 REMARK 3 L33: 1.2629 L12: 1.4304 REMARK 3 L13: 0.0152 L23: 0.9526 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: 0.0674 S13: -0.0966 REMARK 3 S21: -0.3250 S22: 0.0417 S23: 0.1576 REMARK 3 S31: 0.0876 S32: 0.0395 S33: 0.0477 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 109 L 210 REMARK 3 ORIGIN FOR THE GROUP (A): -52.7395 -13.5123 9.0967 REMARK 3 T TENSOR REMARK 3 T11: -0.3018 T22: -0.1076 REMARK 3 T33: 0.1252 T12: -0.0662 REMARK 3 T13: -0.0502 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.6948 L22: 5.8029 REMARK 3 L33: 1.7133 L12: -2.3456 REMARK 3 L13: -1.7545 L23: 2.8207 REMARK 3 S TENSOR REMARK 3 S11: 0.1132 S12: -0.0967 S13: 0.3254 REMARK 3 S21: -0.2466 S22: 0.0035 S23: 0.3688 REMARK 3 S31: -0.1578 S32: -0.2982 S33: -0.1166 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 122 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1367 -6.9221 18.3570 REMARK 3 T TENSOR REMARK 3 T11: -0.4327 T22: -0.1630 REMARK 3 T33: -0.3660 T12: -0.0595 REMARK 3 T13: 0.0186 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.4450 L22: 2.1531 REMARK 3 L33: 2.5965 L12: -0.2248 REMARK 3 L13: 0.1813 L23: 0.9818 REMARK 3 S TENSOR REMARK 3 S11: -0.2188 S12: -0.0169 S13: -0.1298 REMARK 3 S21: 0.1105 S22: 0.1503 S23: 0.1170 REMARK 3 S31: -0.0747 S32: -0.0517 S33: 0.0685 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 123 H 123 REMARK 3 ORIGIN FOR THE GROUP (A): -51.1750 19.7888 29.5683 REMARK 3 T TENSOR REMARK 3 T11: -0.1292 T22: 0.0658 REMARK 3 T33: 0.0271 T12: 0.1287 REMARK 3 T13: -0.1007 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.6014 L22: 4.2532 REMARK 3 L33: 3.2685 L12: -1.3024 REMARK 3 L13: -0.8449 L23: 2.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.2727 S12: 0.3917 S13: -0.0919 REMARK 3 S21: -0.6841 S22: -0.2542 S23: 0.4298 REMARK 3 S31: -0.7017 S32: -0.2267 S33: -0.0185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZLS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.001 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 4000, 0.05 NA ACETATE, PH 6.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 72.32300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.15950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 72.32300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.15950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 72.32300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.15950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 72.32300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.15950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.60400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG L 211 REMARK 465 GLY L 212 REMARK 465 SER H 129 REMARK 465 SER H 130 REMARK 465 LYS H 131 REMARK 465 SER H 132 REMARK 465 THR H 133 REMARK 465 SER H 134 REMARK 465 SER H 199 REMARK 465 LEU H 200 REMARK 465 GLY H 201 REMARK 465 THR H 202 REMARK 465 LYS H 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP H 58 O HOH H 233 1.99 REMARK 500 OD2 ASP H 61 O HOH H 235 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU L 54 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 ASP L 81 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG L 108 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG L 108 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP L 122 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP H 58 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 CYS H 92 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU L 30 -115.12 44.97 REMARK 500 ALA L 51 -45.84 75.65 REMARK 500 SER L 67 148.51 -170.50 REMARK 500 ALA L 84 -172.46 -171.01 REMARK 500 LYS L 190 -67.44 -95.60 REMARK 500 ASP H 100B -26.68 -34.20 REMARK 500 ASN H 100C 92.01 -163.37 REMARK 500 ALA H 125 122.10 37.97 REMARK 500 ASP H 146 66.38 66.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN H 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN H 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN H 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN H 232 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OM3 RELATED DB: PDB REMARK 900 RELATED ID: 1OP3 RELATED DB: PDB REMARK 900 RELATED ID: 1OP5 RELATED DB: PDB REMARK 900 RELATED ID: 1ZLU RELATED DB: PDB REMARK 900 RELATED ID: 1ZLV RELATED DB: PDB REMARK 900 RELATED ID: 1ZLW RELATED DB: PDB DBREF 1ZLS L 2 212 PDB 1ZLS 1ZLS 2 212 DBREF 1ZLS H 1 228 PDB 1ZLS 1ZLS 1 228 SEQRES 1 L 211 VAL VAL MET THR GLN SER PRO SER THR LEU SER ALA SER SEQRES 2 L 211 VAL GLY ASP THR ILE THR ILE THR CYS ARG ALA SER GLN SEQRES 3 L 211 SER ILE GLU THR TRP LEU ALA TRP TYR GLN GLN LYS PRO SEQRES 4 L 211 GLY LYS ALA PRO LYS LEU LEU ILE TYR LYS ALA SER THR SEQRES 5 L 211 LEU LYS THR GLY VAL PRO SER ARG PHE SER GLY SER GLY SEQRES 6 L 211 SER GLY THR GLU PHE THR LEU THR ILE SER GLY LEU GLN SEQRES 7 L 211 PHE ASP ASP PHE ALA THR TYR HIS CYS GLN HIS TYR ALA SEQRES 8 L 211 GLY TYR SER ALA THR PHE GLY GLN GLY THR ARG VAL GLU SEQRES 9 L 211 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 211 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 L 211 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 211 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 211 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 211 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 L 211 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 211 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 211 ASN ARG GLY SEQRES 1 H 224 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 224 ALA GLY GLY SER LEU ILE LEU SER CYS GLY VAL SER ASN SEQRES 3 H 224 PHE ARG ILE SER ALA HIS THR MET ASN TRP VAL ARG ARG SEQRES 4 H 224 VAL PRO GLY GLY GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 H 224 THR SER SER THR TYR ARG ASP TYR ALA ASP ALA VAL LYS SEQRES 6 H 224 GLY ARG PHE THR VAL SER ARG ASP ASP LEU GLU ASP PHE SEQRES 7 H 224 VAL TYR LEU GLN MET HIS LYS MET ARG VAL GLU ASP THR SEQRES 8 H 224 ALA ILE TYR TYR CYS ALA ARG LYS GLY SER ASP ARG LEU SEQRES 9 H 224 SER ASP ASN ASP PRO PHE ASP ALA TRP GLY PRO GLY THR SEQRES 10 H 224 VAL VAL THR VAL SER PRO ALA SER THR LYS GLY PRO SER SEQRES 11 H 224 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 224 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 224 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 224 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 224 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 224 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 224 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 224 GLU PRO LYS HET MAN H 229 11 HET MAN H 230 11 HET MAN H 231 11 HET MAN H 232 12 HETNAM MAN ALPHA-D-MANNOSE FORMUL 3 MAN 4(C6 H12 O6) FORMUL 4 HOH *121(H2 O) HELIX 1 1 GLN L 79 PHE L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 HIS L 189 1 7 HELIX 4 4 ARG H 28 HIS H 32 5 5 HELIX 5 5 THR H 52A THR H 55 5 4 HELIX 6 6 ARG H 83 THR H 87 5 5 HELIX 7 7 SER H 163 ALA H 165 5 3 HELIX 8 8 PRO H 214 ASN H 216 5 3 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 THR L 18 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 GLU L 70 SER L 76 -1 O LEU L 73 N ILE L 21 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 B 6 THR L 10 ALA L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 B 6 THR L 85 TYR L 91 -1 N TYR L 86 O THR L 102 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 B 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 C 4 THR L 10 ALA L 13 0 SHEET 2 C 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 C 4 THR L 85 TYR L 91 -1 N TYR L 86 O THR L 102 SHEET 4 C 4 ALA L 96 PHE L 98 -1 O THR L 97 N HIS L 90 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 D 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 D 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 E 4 ALA L 153 LEU L 154 0 SHEET 2 E 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 E 4 TYR L 192 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 E 4 VAL L 205 PHE L 209 -1 O VAL L 205 N VAL L 196 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O GLY H 23 N VAL H 5 SHEET 3 F 4 PHE H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 F 4 PHE H 67 ASP H 72 -1 N ASP H 72 O PHE H 77 SHEET 1 G 6 GLY H 10 LYS H 13 0 SHEET 2 G 6 THR H 107 SER H 112 1 O SER H 112 N VAL H 12 SHEET 3 G 6 ALA H 88 LYS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 G 6 MET H 34 ARG H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 G 6 ARG H 57 TYR H 59 -1 O ASP H 58 N SER H 50 SHEET 1 H 4 GLY H 10 LYS H 13 0 SHEET 2 H 4 THR H 107 SER H 112 1 O SER H 112 N VAL H 12 SHEET 3 H 4 ALA H 88 LYS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 H 4 PHE H 100F TRP H 103 -1 O ALA H 102 N ARG H 94 SHEET 1 I 4 SER H 120 PRO H 123 0 SHEET 2 I 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 122 SHEET 3 I 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 I 4 HIS H 172 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 J 4 SER H 120 PRO H 123 0 SHEET 2 J 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 122 SHEET 3 J 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 J 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 K 3 VAL H 152 TRP H 157 0 SHEET 2 K 3 TYR H 206 HIS H 212 -1 O ASN H 209 N SER H 156 SHEET 3 K 3 THR H 217 VAL H 225 -1 O THR H 217 N HIS H 212 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.05 LINK C1 MAN H 229 O2 MAN H 230 1555 1555 1.42 LINK C1 MAN H 230 O2 MAN H 231 1555 1555 1.46 LINK C1 MAN H 231 O3 MAN H 232 1555 1555 1.43 CISPEP 1 SER L 7 PRO L 8 0 -8.00 CISPEP 2 TYR L 140 PRO L 141 0 -3.18 CISPEP 3 PHE H 148 PRO H 149 0 -4.78 CISPEP 4 GLU H 150 PRO H 151 0 9.68 SITE 1 AC1 14 ALA H 31 HIS H 32 THR H 33 LYS H 95 SITE 2 AC1 14 GLY H 96 LEU H 100 SER H 100A ASP H 100B SITE 3 AC1 14 ASN H 100C ASP H 100D MAN H 230 HOH H 275 SITE 4 AC1 14 GLY L 93 TYR L 94 SITE 1 AC2 6 ALA H 31 SER H 100A ASP H 100B MAN H 229 SITE 2 AC2 6 MAN H 231 MAN H 232 SITE 1 AC3 5 MAN H 230 MAN H 232 HOH H 240 HOH H 275 SITE 2 AC3 5 TYR L 94 SITE 1 AC4 2 MAN H 230 MAN H 231 CRYST1 144.646 148.319 54.604 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006913 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018314 0.00000