data_1ZME # _entry.id 1ZME # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZME pdb_00001zme 10.2210/pdb1zme/pdb RCSB PDT044 ? ? WWPDB D_1000177490 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-09-16 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.value' 8 4 'Structure model' '_struct_conn.conn_type_id' 9 4 'Structure model' '_struct_conn.id' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 26 4 'Structure model' '_struct_conn_type.id' 27 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZME _pdbx_database_status.recvd_initial_deposition_date 1997-08-06 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Swaminathan, K.' 1 'Marmorstein, R.' 2 # _citation.id primary _citation.title ;Crystal structure of a PUT3-DNA complex reveals a novel mechanism for DNA recognition by a protein containing a Zn2Cys6 binuclear cluster. ; _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 4 _citation.page_first 751 _citation.page_last 759 _citation.year 1997 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9303004 _citation.pdbx_database_id_DOI 10.1038/nsb0997-751 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Swaminathan, K.' 1 ? primary 'Flynn, P.' 2 ? primary 'Reece, R.J.' 3 ? primary 'Marmorstein, R.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*AP*CP*GP*GP*GP*AP*AP*GP*CP*CP*AP*AP*CP*TP*CP*CP*G)-3') ; 5206.389 1 ? ? ? ? 2 polymer man ;DNA (5'-D(*AP*CP*GP*GP*AP*GP*(5IU)P*TP*GP*GP*CP*TP*(5IU)P*CP*CP*CP*G)-3') ; 5443.110 1 ? ? ? ? 3 polymer man 'PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR' 7963.330 2 ? ? 'RESIDUES 31 - 100' ? 4 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 5 water nat water 18.015 157 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'PUT3 (PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR)' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DG)(DG)(DA)(DA)(DG)(DC)(DC)(DA)(DA)(DC)(DT)(DC)(DC)(DG)' ACGGGAAGCCAACTCCG A ? 2 polydeoxyribonucleotide no yes '(DA)(DC)(DG)(DG)(DA)(DG)(5IU)(DT)(DG)(DG)(DC)(DT)(5IU)(DC)(DC)(DC)(DG)' ACGGAGUTGGCTUCCCG B ? 3 'polypeptide(L)' no no SVACLSCRKRHIKCPGGNPCQKCVTSNAICEYLEPSKKIVVSTKYLQQLQKDLNDKTEENNRLKALLLER SVACLSCRKRHIKCPGGNPCQKCVTSNAICEYLEPSKKIVVSTKYLQQLQKDLNDKTEENNRLKALLLER C,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DA n 1 8 DG n 1 9 DC n 1 10 DC n 1 11 DA n 1 12 DA n 1 13 DC n 1 14 DT n 1 15 DC n 1 16 DC n 1 17 DG n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 DG n 2 5 DA n 2 6 DG n 2 7 5IU n 2 8 DT n 2 9 DG n 2 10 DG n 2 11 DC n 2 12 DT n 2 13 5IU n 2 14 DC n 2 15 DC n 2 16 DC n 2 17 DG n 3 1 SER n 3 2 VAL n 3 3 ALA n 3 4 CYS n 3 5 LEU n 3 6 SER n 3 7 CYS n 3 8 ARG n 3 9 LYS n 3 10 ARG n 3 11 HIS n 3 12 ILE n 3 13 LYS n 3 14 CYS n 3 15 PRO n 3 16 GLY n 3 17 GLY n 3 18 ASN n 3 19 PRO n 3 20 CYS n 3 21 GLN n 3 22 LYS n 3 23 CYS n 3 24 VAL n 3 25 THR n 3 26 SER n 3 27 ASN n 3 28 ALA n 3 29 ILE n 3 30 CYS n 3 31 GLU n 3 32 TYR n 3 33 LEU n 3 34 GLU n 3 35 PRO n 3 36 SER n 3 37 LYS n 3 38 LYS n 3 39 ILE n 3 40 VAL n 3 41 VAL n 3 42 SER n 3 43 THR n 3 44 LYS n 3 45 TYR n 3 46 LEU n 3 47 GLN n 3 48 GLN n 3 49 LEU n 3 50 GLN n 3 51 LYS n 3 52 ASP n 3 53 LEU n 3 54 ASN n 3 55 ASP n 3 56 LYS n 3 57 THR n 3 58 GLU n 3 59 GLU n 3 60 ASN n 3 61 ASN n 3 62 ARG n 3 63 LEU n 3 64 LYS n 3 65 ALA n 3 66 LEU n 3 67 LEU n 3 68 LEU n 3 69 GLU n 3 70 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ;baker's yeast ; Saccharomyces ? ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia 'PUT3 (31-100)' ? ? ? ? 'BL21 (DE3) LYS-S' ? ? ? ? ? ? ? ? PET16B ? ? ? ? ? 3 1 sample ? ? ? ;baker's yeast ; Saccharomyces ? ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5IU 'DNA linking' n "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 I N2 O8 P' 434.078 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DA 11 11 11 DA A A . n A 1 12 DA 12 12 12 DA A A . n A 1 13 DC 13 13 13 DC C A . n A 1 14 DT 14 14 14 DT T A . n A 1 15 DC 15 15 15 DC C A . n A 1 16 DC 16 16 16 DC C A . n A 1 17 DG 17 17 17 DG G A . n B 2 1 DA 1 1 1 DA A B . n B 2 2 DC 2 2 2 DC C B . n B 2 3 DG 3 3 3 DG G B . n B 2 4 DG 4 4 4 DG G B . n B 2 5 DA 5 5 5 DA A B . n B 2 6 DG 6 6 6 DG G B . n B 2 7 5IU 7 7 7 5IU +U B . n B 2 8 DT 8 8 8 DT T B . n B 2 9 DG 9 9 9 DG G B . n B 2 10 DG 10 10 10 DG G B . n B 2 11 DC 11 11 11 DC C B . n B 2 12 DT 12 12 12 DT T B . n B 2 13 5IU 13 13 13 5IU +U B . n B 2 14 DC 14 14 14 DC C B . n B 2 15 DC 15 15 15 DC C B . n B 2 16 DC 16 16 16 DC C B . n B 2 17 DG 17 17 17 DG G B . n C 3 1 SER 1 31 31 SER SER C . n C 3 2 VAL 2 32 32 VAL VAL C . n C 3 3 ALA 3 33 33 ALA ALA C . n C 3 4 CYS 4 34 34 CYS CYS C . n C 3 5 LEU 5 35 35 LEU LEU C . n C 3 6 SER 6 36 36 SER SER C . n C 3 7 CYS 7 37 37 CYS CYS C . n C 3 8 ARG 8 38 38 ARG ARG C . n C 3 9 LYS 9 39 39 LYS LYS C . n C 3 10 ARG 10 40 40 ARG ARG C . n C 3 11 HIS 11 41 41 HIS HIS C . n C 3 12 ILE 12 42 42 ILE ILE C . n C 3 13 LYS 13 43 43 LYS LYS C . n C 3 14 CYS 14 44 44 CYS CYS C . n C 3 15 PRO 15 45 45 PRO PRO C . n C 3 16 GLY 16 46 46 GLY GLY C . n C 3 17 GLY 17 47 47 GLY GLY C . n C 3 18 ASN 18 48 48 ASN ASN C . n C 3 19 PRO 19 49 49 PRO PRO C . n C 3 20 CYS 20 50 50 CYS CYS C . n C 3 21 GLN 21 51 51 GLN GLN C . n C 3 22 LYS 22 52 52 LYS LYS C . n C 3 23 CYS 23 53 53 CYS CYS C . n C 3 24 VAL 24 54 54 VAL VAL C . n C 3 25 THR 25 55 55 THR THR C . n C 3 26 SER 26 56 56 SER SER C . n C 3 27 ASN 27 57 57 ASN ASN C . n C 3 28 ALA 28 58 58 ALA ALA C . n C 3 29 ILE 29 59 59 ILE ILE C . n C 3 30 CYS 30 60 60 CYS CYS C . n C 3 31 GLU 31 61 61 GLU GLU C . n C 3 32 TYR 32 62 62 TYR TYR C . n C 3 33 LEU 33 63 63 LEU LEU C . n C 3 34 GLU 34 64 64 GLU GLU C . n C 3 35 PRO 35 65 65 PRO PRO C . n C 3 36 SER 36 66 66 SER SER C . n C 3 37 LYS 37 67 67 LYS LYS C . n C 3 38 LYS 38 68 68 LYS LYS C . n C 3 39 ILE 39 69 69 ILE ILE C . n C 3 40 VAL 40 70 70 VAL VAL C . n C 3 41 VAL 41 71 71 VAL VAL C . n C 3 42 SER 42 72 72 SER SER C . n C 3 43 THR 43 73 73 THR THR C . n C 3 44 LYS 44 74 74 LYS LYS C . n C 3 45 TYR 45 75 75 TYR TYR C . n C 3 46 LEU 46 76 76 LEU LEU C . n C 3 47 GLN 47 77 77 GLN GLN C . n C 3 48 GLN 48 78 78 GLN GLN C . n C 3 49 LEU 49 79 79 LEU LEU C . n C 3 50 GLN 50 80 80 GLN GLN C . n C 3 51 LYS 51 81 81 LYS LYS C . n C 3 52 ASP 52 82 82 ASP ASP C . n C 3 53 LEU 53 83 83 LEU LEU C . n C 3 54 ASN 54 84 84 ASN ASN C . n C 3 55 ASP 55 85 85 ASP ASP C . n C 3 56 LYS 56 86 86 LYS LYS C . n C 3 57 THR 57 87 87 THR THR C . n C 3 58 GLU 58 88 88 GLU GLU C . n C 3 59 GLU 59 89 89 GLU GLU C . n C 3 60 ASN 60 90 90 ASN ASN C . n C 3 61 ASN 61 91 91 ASN ASN C . n C 3 62 ARG 62 92 92 ARG ARG C . n C 3 63 LEU 63 93 93 LEU LEU C . n C 3 64 LYS 64 94 94 LYS LYS C . n C 3 65 ALA 65 95 95 ALA ALA C . n C 3 66 LEU 66 96 96 LEU LEU C . n C 3 67 LEU 67 97 97 LEU LEU C . n C 3 68 LEU 68 98 98 LEU LEU C . n C 3 69 GLU 69 99 99 GLU GLU C . n C 3 70 ARG 70 100 100 ARG ARG C . n D 3 1 SER 1 31 31 SER SER D . n D 3 2 VAL 2 32 32 VAL VAL D . n D 3 3 ALA 3 33 33 ALA ALA D . n D 3 4 CYS 4 34 34 CYS CYS D . n D 3 5 LEU 5 35 35 LEU LEU D . n D 3 6 SER 6 36 36 SER SER D . n D 3 7 CYS 7 37 37 CYS CYS D . n D 3 8 ARG 8 38 38 ARG ARG D . n D 3 9 LYS 9 39 39 LYS LYS D . n D 3 10 ARG 10 40 40 ARG ARG D . n D 3 11 HIS 11 41 41 HIS HIS D . n D 3 12 ILE 12 42 42 ILE ILE D . n D 3 13 LYS 13 43 43 LYS LYS D . n D 3 14 CYS 14 44 44 CYS CYS D . n D 3 15 PRO 15 45 45 PRO PRO D . n D 3 16 GLY 16 46 46 GLY GLY D . n D 3 17 GLY 17 47 47 GLY GLY D . n D 3 18 ASN 18 48 48 ASN ASN D . n D 3 19 PRO 19 49 49 PRO PRO D . n D 3 20 CYS 20 50 50 CYS CYS D . n D 3 21 GLN 21 51 51 GLN GLN D . n D 3 22 LYS 22 52 52 LYS LYS D . n D 3 23 CYS 23 53 53 CYS CYS D . n D 3 24 VAL 24 54 54 VAL VAL D . n D 3 25 THR 25 55 55 THR THR D . n D 3 26 SER 26 56 56 SER SER D . n D 3 27 ASN 27 57 57 ASN ASN D . n D 3 28 ALA 28 58 58 ALA ALA D . n D 3 29 ILE 29 59 59 ILE ILE D . n D 3 30 CYS 30 60 60 CYS CYS D . n D 3 31 GLU 31 61 61 GLU GLU D . n D 3 32 TYR 32 62 62 TYR TYR D . n D 3 33 LEU 33 63 63 LEU LEU D . n D 3 34 GLU 34 64 64 GLU GLU D . n D 3 35 PRO 35 65 65 PRO PRO D . n D 3 36 SER 36 66 66 SER SER D . n D 3 37 LYS 37 67 67 LYS LYS D . n D 3 38 LYS 38 68 68 LYS LYS D . n D 3 39 ILE 39 69 69 ILE ILE D . n D 3 40 VAL 40 70 70 VAL VAL D . n D 3 41 VAL 41 71 71 VAL VAL D . n D 3 42 SER 42 72 72 SER SER D . n D 3 43 THR 43 73 73 THR THR D . n D 3 44 LYS 44 74 74 LYS LYS D . n D 3 45 TYR 45 75 75 TYR TYR D . n D 3 46 LEU 46 76 76 LEU LEU D . n D 3 47 GLN 47 77 77 GLN GLN D . n D 3 48 GLN 48 78 78 GLN GLN D . n D 3 49 LEU 49 79 79 LEU LEU D . n D 3 50 GLN 50 80 80 GLN GLN D . n D 3 51 LYS 51 81 81 LYS LYS D . n D 3 52 ASP 52 82 82 ASP ASP D . n D 3 53 LEU 53 83 83 LEU LEU D . n D 3 54 ASN 54 84 84 ASN ASN D . n D 3 55 ASP 55 85 85 ASP ASP D . n D 3 56 LYS 56 86 86 LYS LYS D . n D 3 57 THR 57 87 87 THR THR D . n D 3 58 GLU 58 88 88 GLU GLU D . n D 3 59 GLU 59 89 89 GLU GLU D . n D 3 60 ASN 60 90 90 ASN ASN D . n D 3 61 ASN 61 91 91 ASN ASN D . n D 3 62 ARG 62 92 92 ARG ARG D . n D 3 63 LEU 63 93 93 LEU LEU D . n D 3 64 LYS 64 94 94 LYS LYS D . n D 3 65 ALA 65 95 95 ALA ALA D . n D 3 66 LEU 66 96 96 LEU LEU D . n D 3 67 LEU 67 97 97 LEU LEU D . n D 3 68 LEU 68 98 98 LEU LEU D . n D 3 69 GLU 69 99 99 GLU GLU D . n D 3 70 ARG 70 100 100 ARG ARG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN 1 1 1 ZN ZN C . F 4 ZN 1 2 2 ZN ZN C . G 4 ZN 1 1 1 ZN ZN D . H 4 ZN 1 2 2 ZN ZN D . I 5 HOH 1 18 1 HOH HOH A . I 5 HOH 2 19 2 HOH HOH A . I 5 HOH 3 20 3 HOH HOH A . I 5 HOH 4 21 4 HOH HOH A . I 5 HOH 5 22 7 HOH HOH A . I 5 HOH 6 23 20 HOH HOH A . I 5 HOH 7 24 26 HOH HOH A . I 5 HOH 8 25 27 HOH HOH A . I 5 HOH 9 26 32 HOH HOH A . I 5 HOH 10 27 42 HOH HOH A . I 5 HOH 11 28 50 HOH HOH A . I 5 HOH 12 29 52 HOH HOH A . I 5 HOH 13 30 53 HOH HOH A . I 5 HOH 14 31 63 HOH HOH A . I 5 HOH 15 32 65 HOH HOH A . I 5 HOH 16 33 68 HOH HOH A . I 5 HOH 17 34 71 HOH HOH A . I 5 HOH 18 35 77 HOH HOH A . I 5 HOH 19 36 79 HOH HOH A . I 5 HOH 20 37 87 HOH HOH A . I 5 HOH 21 38 89 HOH HOH A . I 5 HOH 22 39 91 HOH HOH A . I 5 HOH 23 40 92 HOH HOH A . I 5 HOH 24 41 94 HOH HOH A . I 5 HOH 25 42 95 HOH HOH A . I 5 HOH 26 43 99 HOH HOH A . I 5 HOH 27 44 100 HOH HOH A . I 5 HOH 28 45 103 HOH HOH A . I 5 HOH 29 46 108 HOH HOH A . I 5 HOH 30 47 112 HOH HOH A . I 5 HOH 31 48 122 HOH HOH A . I 5 HOH 32 49 125 HOH HOH A . I 5 HOH 33 50 137 HOH HOH A . I 5 HOH 34 51 138 HOH HOH A . I 5 HOH 35 52 140 HOH HOH A . I 5 HOH 36 53 142 HOH HOH A . I 5 HOH 37 54 143 HOH HOH A . I 5 HOH 38 55 154 HOH HOH A . I 5 HOH 39 56 157 HOH HOH A . J 5 HOH 1 18 14 HOH HOH B . J 5 HOH 2 19 25 HOH HOH B . J 5 HOH 3 20 31 HOH HOH B . J 5 HOH 4 21 34 HOH HOH B . J 5 HOH 5 22 41 HOH HOH B . J 5 HOH 6 23 49 HOH HOH B . J 5 HOH 7 24 56 HOH HOH B . J 5 HOH 8 25 64 HOH HOH B . J 5 HOH 9 26 70 HOH HOH B . J 5 HOH 10 27 73 HOH HOH B . J 5 HOH 11 28 74 HOH HOH B . J 5 HOH 12 29 76 HOH HOH B . J 5 HOH 13 30 78 HOH HOH B . J 5 HOH 14 31 110 HOH HOH B . J 5 HOH 15 32 111 HOH HOH B . J 5 HOH 16 33 115 HOH HOH B . J 5 HOH 17 34 118 HOH HOH B . J 5 HOH 18 35 121 HOH HOH B . J 5 HOH 19 36 127 HOH HOH B . J 5 HOH 20 37 128 HOH HOH B . J 5 HOH 21 38 136 HOH HOH B . J 5 HOH 22 39 145 HOH HOH B . J 5 HOH 23 40 146 HOH HOH B . J 5 HOH 24 41 149 HOH HOH B . J 5 HOH 25 42 150 HOH HOH B . J 5 HOH 26 43 151 HOH HOH B . J 5 HOH 27 44 152 HOH HOH B . K 5 HOH 1 101 8 HOH HOH C . K 5 HOH 2 102 11 HOH HOH C . K 5 HOH 3 103 15 HOH HOH C . K 5 HOH 4 104 21 HOH HOH C . K 5 HOH 5 105 22 HOH HOH C . K 5 HOH 6 106 23 HOH HOH C . K 5 HOH 7 107 24 HOH HOH C . K 5 HOH 8 108 29 HOH HOH C . K 5 HOH 9 109 30 HOH HOH C . K 5 HOH 10 110 33 HOH HOH C . K 5 HOH 11 111 35 HOH HOH C . K 5 HOH 12 112 36 HOH HOH C . K 5 HOH 13 113 37 HOH HOH C . K 5 HOH 14 114 39 HOH HOH C . K 5 HOH 15 115 43 HOH HOH C . K 5 HOH 16 116 44 HOH HOH C . K 5 HOH 17 117 45 HOH HOH C . K 5 HOH 18 118 48 HOH HOH C . K 5 HOH 19 119 54 HOH HOH C . K 5 HOH 20 120 55 HOH HOH C . K 5 HOH 21 121 58 HOH HOH C . K 5 HOH 22 122 59 HOH HOH C . K 5 HOH 23 123 60 HOH HOH C . K 5 HOH 24 124 61 HOH HOH C . K 5 HOH 25 125 62 HOH HOH C . K 5 HOH 26 126 66 HOH HOH C . K 5 HOH 27 127 67 HOH HOH C . K 5 HOH 28 128 72 HOH HOH C . K 5 HOH 29 129 80 HOH HOH C . K 5 HOH 30 130 82 HOH HOH C . K 5 HOH 31 131 83 HOH HOH C . K 5 HOH 32 132 90 HOH HOH C . K 5 HOH 33 133 93 HOH HOH C . K 5 HOH 34 134 98 HOH HOH C . K 5 HOH 35 135 104 HOH HOH C . K 5 HOH 36 136 107 HOH HOH C . K 5 HOH 37 137 113 HOH HOH C . K 5 HOH 38 138 114 HOH HOH C . K 5 HOH 39 139 116 HOH HOH C . K 5 HOH 40 140 117 HOH HOH C . K 5 HOH 41 141 119 HOH HOH C . K 5 HOH 42 142 120 HOH HOH C . K 5 HOH 43 143 124 HOH HOH C . K 5 HOH 44 144 130 HOH HOH C . K 5 HOH 45 145 131 HOH HOH C . K 5 HOH 46 146 141 HOH HOH C . K 5 HOH 47 147 153 HOH HOH C . K 5 HOH 48 148 155 HOH HOH C . K 5 HOH 49 149 156 HOH HOH C . L 5 HOH 1 101 5 HOH HOH D . L 5 HOH 2 102 6 HOH HOH D . L 5 HOH 3 103 9 HOH HOH D . L 5 HOH 4 104 10 HOH HOH D . L 5 HOH 5 105 12 HOH HOH D . L 5 HOH 6 106 13 HOH HOH D . L 5 HOH 7 107 16 HOH HOH D . L 5 HOH 8 108 17 HOH HOH D . L 5 HOH 9 109 18 HOH HOH D . L 5 HOH 10 110 19 HOH HOH D . L 5 HOH 11 111 28 HOH HOH D . L 5 HOH 12 112 38 HOH HOH D . L 5 HOH 13 113 40 HOH HOH D . L 5 HOH 14 114 46 HOH HOH D . L 5 HOH 15 115 47 HOH HOH D . L 5 HOH 16 116 51 HOH HOH D . L 5 HOH 17 117 57 HOH HOH D . L 5 HOH 18 118 69 HOH HOH D . L 5 HOH 19 119 75 HOH HOH D . L 5 HOH 20 120 81 HOH HOH D . L 5 HOH 21 121 84 HOH HOH D . L 5 HOH 22 122 85 HOH HOH D . L 5 HOH 23 123 86 HOH HOH D . L 5 HOH 24 124 88 HOH HOH D . L 5 HOH 25 125 96 HOH HOH D . L 5 HOH 26 126 97 HOH HOH D . L 5 HOH 27 127 101 HOH HOH D . L 5 HOH 28 128 102 HOH HOH D . L 5 HOH 29 129 105 HOH HOH D . L 5 HOH 30 130 106 HOH HOH D . L 5 HOH 31 131 109 HOH HOH D . L 5 HOH 32 132 123 HOH HOH D . L 5 HOH 33 133 126 HOH HOH D . L 5 HOH 34 134 129 HOH HOH D . L 5 HOH 35 135 132 HOH HOH D . L 5 HOH 36 136 133 HOH HOH D . L 5 HOH 37 137 134 HOH HOH D . L 5 HOH 38 138 135 HOH HOH D . L 5 HOH 39 139 139 HOH HOH D . L 5 HOH 40 140 144 HOH HOH D . L 5 HOH 41 141 147 HOH HOH D . L 5 HOH 42 142 148 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASES phasing . ? 1 X-PLOR refinement 3.1 ? 2 MOSFLM 'data reduction' . ? 3 # _cell.entry_id 1ZME _cell.length_a 121.650 _cell.length_b 121.650 _cell.length_c 39.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZME _symmetry.space_group_name_H-M 'P 6' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 168 # _exptl.entry_id 1ZME _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.1 _exptl_crystal.density_percent_sol 60.0 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;1.0 MM DIMER PROTEIN + 1.5 MM DNA DUPLEX PREPARED. 1.0 MILLILITER (0.1 M MES BUFFER, PH 6.5 + 10 MM MG CL2 + 20 MM NA CL + 20 % PEG 4K) RESERVOIR. HANGING DROP, LINBRO BOX, 20 DEGREE C. WITHIN 5 DAYS, 0.2 X 0.3 X 0.4 MM CRYSTALS., vapor diffusion - hanging drop, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'MES BUFFER' ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 NACL ? ? ? 1 4 1 'PEG 4000' ? ? ? 1 5 2 'MES BUFFER' ? ? ? 1 6 2 MGCL2 ? ? ? 1 7 2 NACL ? ? ? 1 8 2 'PEG 4000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1996-07-02 _diffrn_detector.details 'MSC/YALE MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'MSC YALE MIRRORS' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ZME _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.5 _reflns.number_obs 11024 _reflns.number_all ? _reflns.percent_possible_obs 95 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 28.30 _reflns.pdbx_redundancy 2.9 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1ZME _refine.ls_number_reflns_obs 10388 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.0010 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 91.5 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.292 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 1057 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 24.27 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MULTIPLE ISOMORPHOUS REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ZME _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.38 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.44 _refine_analyze.Luzzati_sigma_a_free 0.46 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1104 _refine_hist.pdbx_number_atoms_nucleic_acid 690 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 1957 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.753 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 20.8 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.59 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 2.63 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 3.99 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 4.32 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 6.03 2.5 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.65 _refine_ls_shell.number_reflns_R_work 1295 _refine_ls_shell.R_factor_R_work 0.324 _refine_ls_shell.percent_reflns_obs 76.5 _refine_ls_shell.R_factor_R_free 0.368 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 9.6 _refine_ls_shell.number_reflns_R_free 137 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1ZME _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ZME _struct.title 'CRYSTAL STRUCTURE OF PUT3/DNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZME _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'COMPLEX (TRANSCRIPTION REGULATION-DNA), PUT3, ZN2CYS6, BINUCLEAR CLUSTER, TRANSCRIPTION FACTOR, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP PUT3_YEAST P25502 3 31 ? ? 2 PDB 1ZME 1ZME 1 ? ? ? 3 PDB 1ZME 1ZME 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZME C 1 ? 70 ? P25502 31 ? 100 ? 31 100 2 1 1ZME D 1 ? 70 ? P25502 31 ? 100 ? 31 100 3 2 1ZME A 1 ? 17 ? 1ZME 1 ? 17 ? 1 17 4 3 1ZME B 1 ? 17 ? 1ZME 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU C 5 ? ARG C 10 ? LEU C 35 ARG C 40 1 ? 6 HELX_P HELX_P2 2 THR C 43 ? LEU C 49 ? THR C 73 LEU C 79 1 ? 7 HELX_P HELX_P3 3 ASP C 52 ? LEU C 67 ? ASP C 82 LEU C 97 1 ? 16 HELX_P HELX_P4 4 LEU D 5 ? ARG D 10 ? LEU D 35 ARG D 40 1 ? 6 HELX_P HELX_P5 5 VAL D 24 ? SER D 26 ? VAL D 54 SER D 56 5 ? 3 HELX_P HELX_P6 6 THR D 43 ? LEU D 49 ? THR D 73 LEU D 79 1 ? 7 HELX_P HELX_P7 7 ASP D 52 ? LEU D 67 ? ASP D 82 LEU D 97 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 6 "O3'" ? ? ? 1_555 B 5IU 7 P ? ? B DG 6 B 5IU 7 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale2 covale both ? B 5IU 7 "O3'" ? ? ? 1_555 B DT 8 P ? ? B 5IU 7 B DT 8 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? B DT 12 "O3'" ? ? ? 1_555 B 5IU 13 P ? ? B DT 12 B 5IU 13 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale4 covale both ? B 5IU 13 "O3'" ? ? ? 1_555 B DC 14 P ? ? B 5IU 13 B DC 14 1_555 ? ? ? ? ? ? ? 1.594 ? ? metalc1 metalc ? ? E ZN . ZN ? ? ? 1_555 C CYS 4 SG ? ? C ZN 1 C CYS 34 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc2 metalc ? ? E ZN . ZN ? ? ? 1_555 C CYS 7 SG ? ? C ZN 1 C CYS 37 1_555 ? ? ? ? ? ? ? 2.254 ? ? metalc3 metalc ? ? E ZN . ZN ? ? ? 1_555 C CYS 14 SG ? ? C ZN 1 C CYS 44 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc4 metalc ? ? E ZN . ZN ? ? ? 1_555 C CYS 20 SG ? ? C ZN 1 C CYS 50 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc5 metalc ? ? F ZN . ZN ? ? ? 1_555 C CYS 4 SG ? ? C ZN 2 C CYS 34 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc6 metalc ? ? F ZN . ZN ? ? ? 1_555 C CYS 20 SG ? ? C ZN 2 C CYS 50 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc7 metalc ? ? F ZN . ZN ? ? ? 1_555 C CYS 23 SG ? ? C ZN 2 C CYS 53 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc8 metalc ? ? F ZN . ZN ? ? ? 1_555 C CYS 30 SG ? ? C ZN 2 C CYS 60 1_555 ? ? ? ? ? ? ? 2.396 ? ? metalc9 metalc ? ? G ZN . ZN ? ? ? 1_555 D CYS 4 SG ? ? D ZN 1 D CYS 34 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc10 metalc ? ? G ZN . ZN ? ? ? 1_555 D CYS 7 SG ? ? D ZN 1 D CYS 37 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc11 metalc ? ? G ZN . ZN ? ? ? 1_555 D CYS 14 SG ? ? D ZN 1 D CYS 44 1_555 ? ? ? ? ? ? ? 2.350 ? ? metalc12 metalc ? ? G ZN . ZN ? ? ? 1_555 D CYS 20 SG ? ? D ZN 1 D CYS 50 1_555 ? ? ? ? ? ? ? 2.340 ? ? metalc13 metalc ? ? H ZN . ZN ? ? ? 1_555 D CYS 4 SG ? ? D ZN 2 D CYS 34 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc14 metalc ? ? H ZN . ZN ? ? ? 1_555 D CYS 20 SG ? ? D ZN 2 D CYS 50 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc15 metalc ? ? H ZN . ZN ? ? ? 1_555 D CYS 23 SG ? ? D ZN 2 D CYS 53 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc16 metalc ? ? H ZN . ZN ? ? ? 1_555 D CYS 30 SG ? ? D ZN 2 D CYS 60 1_555 ? ? ? ? ? ? ? 2.316 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 17 N1 ? ? A DC 2 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 17 O6 ? ? A DC 2 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 17 N2 ? ? A DC 2 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 16 N3 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 15 N3 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 15 O2 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 15 N4 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 5 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 5 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 5 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B 5IU 13 N3 ? ? A DA 6 B 5IU 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B 5IU 13 O4 ? ? A DA 6 B 5IU 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 12 N3 ? ? A DA 7 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 12 O4 ? ? A DA 7 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 8 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 8 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 8 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 9 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 9 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 9 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 10 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 10 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 10 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 11 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 11 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B 5IU 7 N3 ? ? A DA 12 B 5IU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B 5IU 7 O4 ? ? A DA 12 B 5IU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 13 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 13 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 13 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 14 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 14 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 15 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 15 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 15 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 16 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 16 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 16 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 17 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 17 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 17 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 17 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 17 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 17 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 4 ? C CYS 34 ? 1_555 ZN ? E ZN . ? C ZN 1 ? 1_555 SG ? C CYS 7 ? C CYS 37 ? 1_555 108.9 ? 2 SG ? C CYS 4 ? C CYS 34 ? 1_555 ZN ? E ZN . ? C ZN 1 ? 1_555 SG ? C CYS 14 ? C CYS 44 ? 1_555 110.8 ? 3 SG ? C CYS 7 ? C CYS 37 ? 1_555 ZN ? E ZN . ? C ZN 1 ? 1_555 SG ? C CYS 14 ? C CYS 44 ? 1_555 114.6 ? 4 SG ? C CYS 4 ? C CYS 34 ? 1_555 ZN ? E ZN . ? C ZN 1 ? 1_555 SG ? C CYS 20 ? C CYS 50 ? 1_555 99.6 ? 5 SG ? C CYS 7 ? C CYS 37 ? 1_555 ZN ? E ZN . ? C ZN 1 ? 1_555 SG ? C CYS 20 ? C CYS 50 ? 1_555 109.0 ? 6 SG ? C CYS 14 ? C CYS 44 ? 1_555 ZN ? E ZN . ? C ZN 1 ? 1_555 SG ? C CYS 20 ? C CYS 50 ? 1_555 112.9 ? 7 SG ? C CYS 4 ? C CYS 34 ? 1_555 ZN ? F ZN . ? C ZN 2 ? 1_555 SG ? C CYS 20 ? C CYS 50 ? 1_555 101.7 ? 8 SG ? C CYS 4 ? C CYS 34 ? 1_555 ZN ? F ZN . ? C ZN 2 ? 1_555 SG ? C CYS 23 ? C CYS 53 ? 1_555 111.9 ? 9 SG ? C CYS 20 ? C CYS 50 ? 1_555 ZN ? F ZN . ? C ZN 2 ? 1_555 SG ? C CYS 23 ? C CYS 53 ? 1_555 107.6 ? 10 SG ? C CYS 4 ? C CYS 34 ? 1_555 ZN ? F ZN . ? C ZN 2 ? 1_555 SG ? C CYS 30 ? C CYS 60 ? 1_555 112.3 ? 11 SG ? C CYS 20 ? C CYS 50 ? 1_555 ZN ? F ZN . ? C ZN 2 ? 1_555 SG ? C CYS 30 ? C CYS 60 ? 1_555 108.4 ? 12 SG ? C CYS 23 ? C CYS 53 ? 1_555 ZN ? F ZN . ? C ZN 2 ? 1_555 SG ? C CYS 30 ? C CYS 60 ? 1_555 114.0 ? 13 SG ? D CYS 4 ? D CYS 34 ? 1_555 ZN ? G ZN . ? D ZN 1 ? 1_555 SG ? D CYS 7 ? D CYS 37 ? 1_555 101.9 ? 14 SG ? D CYS 4 ? D CYS 34 ? 1_555 ZN ? G ZN . ? D ZN 1 ? 1_555 SG ? D CYS 14 ? D CYS 44 ? 1_555 111.8 ? 15 SG ? D CYS 7 ? D CYS 37 ? 1_555 ZN ? G ZN . ? D ZN 1 ? 1_555 SG ? D CYS 14 ? D CYS 44 ? 1_555 108.7 ? 16 SG ? D CYS 4 ? D CYS 34 ? 1_555 ZN ? G ZN . ? D ZN 1 ? 1_555 SG ? D CYS 20 ? D CYS 50 ? 1_555 102.7 ? 17 SG ? D CYS 7 ? D CYS 37 ? 1_555 ZN ? G ZN . ? D ZN 1 ? 1_555 SG ? D CYS 20 ? D CYS 50 ? 1_555 117.3 ? 18 SG ? D CYS 14 ? D CYS 44 ? 1_555 ZN ? G ZN . ? D ZN 1 ? 1_555 SG ? D CYS 20 ? D CYS 50 ? 1_555 113.6 ? 19 SG ? D CYS 4 ? D CYS 34 ? 1_555 ZN ? H ZN . ? D ZN 2 ? 1_555 SG ? D CYS 20 ? D CYS 50 ? 1_555 102.2 ? 20 SG ? D CYS 4 ? D CYS 34 ? 1_555 ZN ? H ZN . ? D ZN 2 ? 1_555 SG ? D CYS 23 ? D CYS 53 ? 1_555 109.1 ? 21 SG ? D CYS 20 ? D CYS 50 ? 1_555 ZN ? H ZN . ? D ZN 2 ? 1_555 SG ? D CYS 23 ? D CYS 53 ? 1_555 108.6 ? 22 SG ? D CYS 4 ? D CYS 34 ? 1_555 ZN ? H ZN . ? D ZN 2 ? 1_555 SG ? D CYS 30 ? D CYS 60 ? 1_555 110.3 ? 23 SG ? D CYS 20 ? D CYS 50 ? 1_555 ZN ? H ZN . ? D ZN 2 ? 1_555 SG ? D CYS 30 ? D CYS 60 ? 1_555 113.8 ? 24 SG ? D CYS 23 ? D CYS 53 ? 1_555 ZN ? H ZN . ? D ZN 2 ? 1_555 SG ? D CYS 30 ? D CYS 60 ? 1_555 112.3 ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 18 C . ? ASN 48 C PRO 19 C ? PRO 49 C 1 -0.53 2 ASN 18 D . ? ASN 48 D PRO 19 D ? PRO 49 D 1 -0.27 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS C 38 ? SER C 42 ? LYS C 68 SER C 72 A 2 LYS D 38 ? SER D 42 ? LYS D 68 SER D 72 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id C _pdbx_struct_sheet_hbond.range_1_label_seq_id 41 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id C _pdbx_struct_sheet_hbond.range_1_auth_seq_id 71 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id D _pdbx_struct_sheet_hbond.range_2_label_seq_id 39 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id D _pdbx_struct_sheet_hbond.range_2_auth_seq_id 69 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C ZN 1 ? 5 'BINDING SITE FOR RESIDUE ZN C 1' AC2 Software C ZN 2 ? 5 'BINDING SITE FOR RESIDUE ZN C 2' AC3 Software D ZN 1 ? 5 'BINDING SITE FOR RESIDUE ZN D 1' AC4 Software D ZN 2 ? 5 'BINDING SITE FOR RESIDUE ZN D 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ZN F . ? ZN C 2 . ? 1_555 ? 2 AC1 5 CYS C 4 ? CYS C 34 . ? 1_555 ? 3 AC1 5 CYS C 7 ? CYS C 37 . ? 1_555 ? 4 AC1 5 CYS C 14 ? CYS C 44 . ? 1_555 ? 5 AC1 5 CYS C 20 ? CYS C 50 . ? 1_555 ? 6 AC2 5 ZN E . ? ZN C 1 . ? 1_555 ? 7 AC2 5 CYS C 4 ? CYS C 34 . ? 1_555 ? 8 AC2 5 CYS C 20 ? CYS C 50 . ? 1_555 ? 9 AC2 5 CYS C 23 ? CYS C 53 . ? 1_555 ? 10 AC2 5 CYS C 30 ? CYS C 60 . ? 1_555 ? 11 AC3 5 ZN H . ? ZN D 2 . ? 1_555 ? 12 AC3 5 CYS D 4 ? CYS D 34 . ? 1_555 ? 13 AC3 5 CYS D 7 ? CYS D 37 . ? 1_555 ? 14 AC3 5 CYS D 14 ? CYS D 44 . ? 1_555 ? 15 AC3 5 CYS D 20 ? CYS D 50 . ? 1_555 ? 16 AC4 5 ZN G . ? ZN D 1 . ? 1_555 ? 17 AC4 5 CYS D 4 ? CYS D 34 . ? 1_555 ? 18 AC4 5 CYS D 20 ? CYS D 50 . ? 1_555 ? 19 AC4 5 CYS D 23 ? CYS D 53 . ? 1_555 ? 20 AC4 5 CYS D 30 ? CYS D 60 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 2 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 119.03 _pdbx_validate_rmsd_angle.angle_target_value 109.80 _pdbx_validate_rmsd_angle.angle_deviation 9.23 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN C 48 ? ? -160.21 107.19 2 1 ASN C 57 ? ? 36.79 54.04 3 1 GLU C 64 ? ? -35.98 127.44 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 3 ? ? 0.057 'SIDE CHAIN' 2 1 DC A 9 ? ? 0.066 'SIDE CHAIN' 3 1 DG B 17 ? ? 0.055 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 5IU 7 B 5IU 7 ? DU "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 2 B 5IU 13 B 5IU 13 ? DU "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5IU N1 N N N 1 5IU C2 C N N 2 5IU N3 N N N 3 5IU C4 C N N 4 5IU C5 C N N 5 5IU C6 C N N 6 5IU O2 O N N 7 5IU O4 O N N 8 5IU I5 I N N 9 5IU "C1'" C N R 10 5IU "C2'" C N N 11 5IU "C3'" C N S 12 5IU "C4'" C N R 13 5IU "O3'" O N N 14 5IU "O4'" O N N 15 5IU "C5'" C N N 16 5IU "O5'" O N N 17 5IU P P N N 18 5IU OP1 O N N 19 5IU OP2 O N N 20 5IU OP3 O N N 21 5IU HN3 H N N 22 5IU H6 H N N 23 5IU "H1'" H N N 24 5IU "H2'" H N N 25 5IU "H2''" H N N 26 5IU "H3'" H N N 27 5IU "H4'" H N N 28 5IU "HO3'" H N N 29 5IU "H5'" H N N 30 5IU "H5''" H N N 31 5IU HOP2 H N N 32 5IU HOP3 H N N 33 ALA N N N N 34 ALA CA C N S 35 ALA C C N N 36 ALA O O N N 37 ALA CB C N N 38 ALA OXT O N N 39 ALA H H N N 40 ALA H2 H N N 41 ALA HA H N N 42 ALA HB1 H N N 43 ALA HB2 H N N 44 ALA HB3 H N N 45 ALA HXT H N N 46 ARG N N N N 47 ARG CA C N S 48 ARG C C N N 49 ARG O O N N 50 ARG CB C N N 51 ARG CG C N N 52 ARG CD C N N 53 ARG NE N N N 54 ARG CZ C N N 55 ARG NH1 N N N 56 ARG NH2 N N N 57 ARG OXT O N N 58 ARG H H N N 59 ARG H2 H N N 60 ARG HA H N N 61 ARG HB2 H N N 62 ARG HB3 H N N 63 ARG HG2 H N N 64 ARG HG3 H N N 65 ARG HD2 H N N 66 ARG HD3 H N N 67 ARG HE H N N 68 ARG HH11 H N N 69 ARG HH12 H N N 70 ARG HH21 H N N 71 ARG HH22 H N N 72 ARG HXT H N N 73 ASN N N N N 74 ASN CA C N S 75 ASN C C N N 76 ASN O O N N 77 ASN CB C N N 78 ASN CG C N N 79 ASN OD1 O N N 80 ASN ND2 N N N 81 ASN OXT O N N 82 ASN H H N N 83 ASN H2 H N N 84 ASN HA H N N 85 ASN HB2 H N N 86 ASN HB3 H N N 87 ASN HD21 H N N 88 ASN HD22 H N N 89 ASN HXT H N N 90 ASP N N N N 91 ASP CA C N S 92 ASP C C N N 93 ASP O O N N 94 ASP CB C N N 95 ASP CG C N N 96 ASP OD1 O N N 97 ASP OD2 O N N 98 ASP OXT O N N 99 ASP H H N N 100 ASP H2 H N N 101 ASP HA H N N 102 ASP HB2 H N N 103 ASP HB3 H N N 104 ASP HD2 H N N 105 ASP HXT H N N 106 CYS N N N N 107 CYS CA C N R 108 CYS C C N N 109 CYS O O N N 110 CYS CB C N N 111 CYS SG S N N 112 CYS OXT O N N 113 CYS H H N N 114 CYS H2 H N N 115 CYS HA H N N 116 CYS HB2 H N N 117 CYS HB3 H N N 118 CYS HG H N N 119 CYS HXT H N N 120 DA OP3 O N N 121 DA P P N N 122 DA OP1 O N N 123 DA OP2 O N N 124 DA "O5'" O N N 125 DA "C5'" C N N 126 DA "C4'" C N R 127 DA "O4'" O N N 128 DA "C3'" C N S 129 DA "O3'" O N N 130 DA "C2'" C N N 131 DA "C1'" C N R 132 DA N9 N Y N 133 DA C8 C Y N 134 DA N7 N Y N 135 DA C5 C Y N 136 DA C6 C Y N 137 DA N6 N N N 138 DA N1 N Y N 139 DA C2 C Y N 140 DA N3 N Y N 141 DA C4 C Y N 142 DA HOP3 H N N 143 DA HOP2 H N N 144 DA "H5'" H N N 145 DA "H5''" H N N 146 DA "H4'" H N N 147 DA "H3'" H N N 148 DA "HO3'" H N N 149 DA "H2'" H N N 150 DA "H2''" H N N 151 DA "H1'" H N N 152 DA H8 H N N 153 DA H61 H N N 154 DA H62 H N N 155 DA H2 H N N 156 DC OP3 O N N 157 DC P P N N 158 DC OP1 O N N 159 DC OP2 O N N 160 DC "O5'" O N N 161 DC "C5'" C N N 162 DC "C4'" C N R 163 DC "O4'" O N N 164 DC "C3'" C N S 165 DC "O3'" O N N 166 DC "C2'" C N N 167 DC "C1'" C N R 168 DC N1 N N N 169 DC C2 C N N 170 DC O2 O N N 171 DC N3 N N N 172 DC C4 C N N 173 DC N4 N N N 174 DC C5 C N N 175 DC C6 C N N 176 DC HOP3 H N N 177 DC HOP2 H N N 178 DC "H5'" H N N 179 DC "H5''" H N N 180 DC "H4'" H N N 181 DC "H3'" H N N 182 DC "HO3'" H N N 183 DC "H2'" H N N 184 DC "H2''" H N N 185 DC "H1'" H N N 186 DC H41 H N N 187 DC H42 H N N 188 DC H5 H N N 189 DC H6 H N N 190 DG OP3 O N N 191 DG P P N N 192 DG OP1 O N N 193 DG OP2 O N N 194 DG "O5'" O N N 195 DG "C5'" C N N 196 DG "C4'" C N R 197 DG "O4'" O N N 198 DG "C3'" C N S 199 DG "O3'" O N N 200 DG "C2'" C N N 201 DG "C1'" C N R 202 DG N9 N Y N 203 DG C8 C Y N 204 DG N7 N Y N 205 DG C5 C Y N 206 DG C6 C N N 207 DG O6 O N N 208 DG N1 N N N 209 DG C2 C N N 210 DG N2 N N N 211 DG N3 N N N 212 DG C4 C Y N 213 DG HOP3 H N N 214 DG HOP2 H N N 215 DG "H5'" H N N 216 DG "H5''" H N N 217 DG "H4'" H N N 218 DG "H3'" H N N 219 DG "HO3'" H N N 220 DG "H2'" H N N 221 DG "H2''" H N N 222 DG "H1'" H N N 223 DG H8 H N N 224 DG H1 H N N 225 DG H21 H N N 226 DG H22 H N N 227 DT OP3 O N N 228 DT P P N N 229 DT OP1 O N N 230 DT OP2 O N N 231 DT "O5'" O N N 232 DT "C5'" C N N 233 DT "C4'" C N R 234 DT "O4'" O N N 235 DT "C3'" C N S 236 DT "O3'" O N N 237 DT "C2'" C N N 238 DT "C1'" C N R 239 DT N1 N N N 240 DT C2 C N N 241 DT O2 O N N 242 DT N3 N N N 243 DT C4 C N N 244 DT O4 O N N 245 DT C5 C N N 246 DT C7 C N N 247 DT C6 C N N 248 DT HOP3 H N N 249 DT HOP2 H N N 250 DT "H5'" H N N 251 DT "H5''" H N N 252 DT "H4'" H N N 253 DT "H3'" H N N 254 DT "HO3'" H N N 255 DT "H2'" H N N 256 DT "H2''" H N N 257 DT "H1'" H N N 258 DT H3 H N N 259 DT H71 H N N 260 DT H72 H N N 261 DT H73 H N N 262 DT H6 H N N 263 GLN N N N N 264 GLN CA C N S 265 GLN C C N N 266 GLN O O N N 267 GLN CB C N N 268 GLN CG C N N 269 GLN CD C N N 270 GLN OE1 O N N 271 GLN NE2 N N N 272 GLN OXT O N N 273 GLN H H N N 274 GLN H2 H N N 275 GLN HA H N N 276 GLN HB2 H N N 277 GLN HB3 H N N 278 GLN HG2 H N N 279 GLN HG3 H N N 280 GLN HE21 H N N 281 GLN HE22 H N N 282 GLN HXT H N N 283 GLU N N N N 284 GLU CA C N S 285 GLU C C N N 286 GLU O O N N 287 GLU CB C N N 288 GLU CG C N N 289 GLU CD C N N 290 GLU OE1 O N N 291 GLU OE2 O N N 292 GLU OXT O N N 293 GLU H H N N 294 GLU H2 H N N 295 GLU HA H N N 296 GLU HB2 H N N 297 GLU HB3 H N N 298 GLU HG2 H N N 299 GLU HG3 H N N 300 GLU HE2 H N N 301 GLU HXT H N N 302 GLY N N N N 303 GLY CA C N N 304 GLY C C N N 305 GLY O O N N 306 GLY OXT O N N 307 GLY H H N N 308 GLY H2 H N N 309 GLY HA2 H N N 310 GLY HA3 H N N 311 GLY HXT H N N 312 HIS N N N N 313 HIS CA C N S 314 HIS C C N N 315 HIS O O N N 316 HIS CB C N N 317 HIS CG C Y N 318 HIS ND1 N Y N 319 HIS CD2 C Y N 320 HIS CE1 C Y N 321 HIS NE2 N Y N 322 HIS OXT O N N 323 HIS H H N N 324 HIS H2 H N N 325 HIS HA H N N 326 HIS HB2 H N N 327 HIS HB3 H N N 328 HIS HD1 H N N 329 HIS HD2 H N N 330 HIS HE1 H N N 331 HIS HE2 H N N 332 HIS HXT H N N 333 HOH O O N N 334 HOH H1 H N N 335 HOH H2 H N N 336 ILE N N N N 337 ILE CA C N S 338 ILE C C N N 339 ILE O O N N 340 ILE CB C N S 341 ILE CG1 C N N 342 ILE CG2 C N N 343 ILE CD1 C N N 344 ILE OXT O N N 345 ILE H H N N 346 ILE H2 H N N 347 ILE HA H N N 348 ILE HB H N N 349 ILE HG12 H N N 350 ILE HG13 H N N 351 ILE HG21 H N N 352 ILE HG22 H N N 353 ILE HG23 H N N 354 ILE HD11 H N N 355 ILE HD12 H N N 356 ILE HD13 H N N 357 ILE HXT H N N 358 LEU N N N N 359 LEU CA C N S 360 LEU C C N N 361 LEU O O N N 362 LEU CB C N N 363 LEU CG C N N 364 LEU CD1 C N N 365 LEU CD2 C N N 366 LEU OXT O N N 367 LEU H H N N 368 LEU H2 H N N 369 LEU HA H N N 370 LEU HB2 H N N 371 LEU HB3 H N N 372 LEU HG H N N 373 LEU HD11 H N N 374 LEU HD12 H N N 375 LEU HD13 H N N 376 LEU HD21 H N N 377 LEU HD22 H N N 378 LEU HD23 H N N 379 LEU HXT H N N 380 LYS N N N N 381 LYS CA C N S 382 LYS C C N N 383 LYS O O N N 384 LYS CB C N N 385 LYS CG C N N 386 LYS CD C N N 387 LYS CE C N N 388 LYS NZ N N N 389 LYS OXT O N N 390 LYS H H N N 391 LYS H2 H N N 392 LYS HA H N N 393 LYS HB2 H N N 394 LYS HB3 H N N 395 LYS HG2 H N N 396 LYS HG3 H N N 397 LYS HD2 H N N 398 LYS HD3 H N N 399 LYS HE2 H N N 400 LYS HE3 H N N 401 LYS HZ1 H N N 402 LYS HZ2 H N N 403 LYS HZ3 H N N 404 LYS HXT H N N 405 PRO N N N N 406 PRO CA C N S 407 PRO C C N N 408 PRO O O N N 409 PRO CB C N N 410 PRO CG C N N 411 PRO CD C N N 412 PRO OXT O N N 413 PRO H H N N 414 PRO HA H N N 415 PRO HB2 H N N 416 PRO HB3 H N N 417 PRO HG2 H N N 418 PRO HG3 H N N 419 PRO HD2 H N N 420 PRO HD3 H N N 421 PRO HXT H N N 422 SER N N N N 423 SER CA C N S 424 SER C C N N 425 SER O O N N 426 SER CB C N N 427 SER OG O N N 428 SER OXT O N N 429 SER H H N N 430 SER H2 H N N 431 SER HA H N N 432 SER HB2 H N N 433 SER HB3 H N N 434 SER HG H N N 435 SER HXT H N N 436 THR N N N N 437 THR CA C N S 438 THR C C N N 439 THR O O N N 440 THR CB C N R 441 THR OG1 O N N 442 THR CG2 C N N 443 THR OXT O N N 444 THR H H N N 445 THR H2 H N N 446 THR HA H N N 447 THR HB H N N 448 THR HG1 H N N 449 THR HG21 H N N 450 THR HG22 H N N 451 THR HG23 H N N 452 THR HXT H N N 453 TYR N N N N 454 TYR CA C N S 455 TYR C C N N 456 TYR O O N N 457 TYR CB C N N 458 TYR CG C Y N 459 TYR CD1 C Y N 460 TYR CD2 C Y N 461 TYR CE1 C Y N 462 TYR CE2 C Y N 463 TYR CZ C Y N 464 TYR OH O N N 465 TYR OXT O N N 466 TYR H H N N 467 TYR H2 H N N 468 TYR HA H N N 469 TYR HB2 H N N 470 TYR HB3 H N N 471 TYR HD1 H N N 472 TYR HD2 H N N 473 TYR HE1 H N N 474 TYR HE2 H N N 475 TYR HH H N N 476 TYR HXT H N N 477 VAL N N N N 478 VAL CA C N S 479 VAL C C N N 480 VAL O O N N 481 VAL CB C N N 482 VAL CG1 C N N 483 VAL CG2 C N N 484 VAL OXT O N N 485 VAL H H N N 486 VAL H2 H N N 487 VAL HA H N N 488 VAL HB H N N 489 VAL HG11 H N N 490 VAL HG12 H N N 491 VAL HG13 H N N 492 VAL HG21 H N N 493 VAL HG22 H N N 494 VAL HG23 H N N 495 VAL HXT H N N 496 ZN ZN ZN N N 497 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5IU N1 C2 sing N N 1 5IU N1 C6 sing N N 2 5IU N1 "C1'" sing N N 3 5IU C2 N3 sing N N 4 5IU C2 O2 doub N N 5 5IU N3 C4 sing N N 6 5IU N3 HN3 sing N N 7 5IU C4 C5 sing N N 8 5IU C4 O4 doub N N 9 5IU C5 C6 doub N N 10 5IU C5 I5 sing N N 11 5IU C6 H6 sing N N 12 5IU "C1'" "C2'" sing N N 13 5IU "C1'" "O4'" sing N N 14 5IU "C1'" "H1'" sing N N 15 5IU "C2'" "C3'" sing N N 16 5IU "C2'" "H2'" sing N N 17 5IU "C2'" "H2''" sing N N 18 5IU "C3'" "C4'" sing N N 19 5IU "C3'" "O3'" sing N N 20 5IU "C3'" "H3'" sing N N 21 5IU "C4'" "O4'" sing N N 22 5IU "C4'" "C5'" sing N N 23 5IU "C4'" "H4'" sing N N 24 5IU "O3'" "HO3'" sing N N 25 5IU "C5'" "O5'" sing N N 26 5IU "C5'" "H5'" sing N N 27 5IU "C5'" "H5''" sing N N 28 5IU "O5'" P sing N N 29 5IU P OP1 doub N N 30 5IU P OP2 sing N N 31 5IU P OP3 sing N N 32 5IU OP2 HOP2 sing N N 33 5IU OP3 HOP3 sing N N 34 ALA N CA sing N N 35 ALA N H sing N N 36 ALA N H2 sing N N 37 ALA CA C sing N N 38 ALA CA CB sing N N 39 ALA CA HA sing N N 40 ALA C O doub N N 41 ALA C OXT sing N N 42 ALA CB HB1 sing N N 43 ALA CB HB2 sing N N 44 ALA CB HB3 sing N N 45 ALA OXT HXT sing N N 46 ARG N CA sing N N 47 ARG N H sing N N 48 ARG N H2 sing N N 49 ARG CA C sing N N 50 ARG CA CB sing N N 51 ARG CA HA sing N N 52 ARG C O doub N N 53 ARG C OXT sing N N 54 ARG CB CG sing N N 55 ARG CB HB2 sing N N 56 ARG CB HB3 sing N N 57 ARG CG CD sing N N 58 ARG CG HG2 sing N N 59 ARG CG HG3 sing N N 60 ARG CD NE sing N N 61 ARG CD HD2 sing N N 62 ARG CD HD3 sing N N 63 ARG NE CZ sing N N 64 ARG NE HE sing N N 65 ARG CZ NH1 sing N N 66 ARG CZ NH2 doub N N 67 ARG NH1 HH11 sing N N 68 ARG NH1 HH12 sing N N 69 ARG NH2 HH21 sing N N 70 ARG NH2 HH22 sing N N 71 ARG OXT HXT sing N N 72 ASN N CA sing N N 73 ASN N H sing N N 74 ASN N H2 sing N N 75 ASN CA C sing N N 76 ASN CA CB sing N N 77 ASN CA HA sing N N 78 ASN C O doub N N 79 ASN C OXT sing N N 80 ASN CB CG sing N N 81 ASN CB HB2 sing N N 82 ASN CB HB3 sing N N 83 ASN CG OD1 doub N N 84 ASN CG ND2 sing N N 85 ASN ND2 HD21 sing N N 86 ASN ND2 HD22 sing N N 87 ASN OXT HXT sing N N 88 ASP N CA sing N N 89 ASP N H sing N N 90 ASP N H2 sing N N 91 ASP CA C sing N N 92 ASP CA CB sing N N 93 ASP CA HA sing N N 94 ASP C O doub N N 95 ASP C OXT sing N N 96 ASP CB CG sing N N 97 ASP CB HB2 sing N N 98 ASP CB HB3 sing N N 99 ASP CG OD1 doub N N 100 ASP CG OD2 sing N N 101 ASP OD2 HD2 sing N N 102 ASP OXT HXT sing N N 103 CYS N CA sing N N 104 CYS N H sing N N 105 CYS N H2 sing N N 106 CYS CA C sing N N 107 CYS CA CB sing N N 108 CYS CA HA sing N N 109 CYS C O doub N N 110 CYS C OXT sing N N 111 CYS CB SG sing N N 112 CYS CB HB2 sing N N 113 CYS CB HB3 sing N N 114 CYS SG HG sing N N 115 CYS OXT HXT sing N N 116 DA OP3 P sing N N 117 DA OP3 HOP3 sing N N 118 DA P OP1 doub N N 119 DA P OP2 sing N N 120 DA P "O5'" sing N N 121 DA OP2 HOP2 sing N N 122 DA "O5'" "C5'" sing N N 123 DA "C5'" "C4'" sing N N 124 DA "C5'" "H5'" sing N N 125 DA "C5'" "H5''" sing N N 126 DA "C4'" "O4'" sing N N 127 DA "C4'" "C3'" sing N N 128 DA "C4'" "H4'" sing N N 129 DA "O4'" "C1'" sing N N 130 DA "C3'" "O3'" sing N N 131 DA "C3'" "C2'" sing N N 132 DA "C3'" "H3'" sing N N 133 DA "O3'" "HO3'" sing N N 134 DA "C2'" "C1'" sing N N 135 DA "C2'" "H2'" sing N N 136 DA "C2'" "H2''" sing N N 137 DA "C1'" N9 sing N N 138 DA "C1'" "H1'" sing N N 139 DA N9 C8 sing Y N 140 DA N9 C4 sing Y N 141 DA C8 N7 doub Y N 142 DA C8 H8 sing N N 143 DA N7 C5 sing Y N 144 DA C5 C6 sing Y N 145 DA C5 C4 doub Y N 146 DA C6 N6 sing N N 147 DA C6 N1 doub Y N 148 DA N6 H61 sing N N 149 DA N6 H62 sing N N 150 DA N1 C2 sing Y N 151 DA C2 N3 doub Y N 152 DA C2 H2 sing N N 153 DA N3 C4 sing Y N 154 DC OP3 P sing N N 155 DC OP3 HOP3 sing N N 156 DC P OP1 doub N N 157 DC P OP2 sing N N 158 DC P "O5'" sing N N 159 DC OP2 HOP2 sing N N 160 DC "O5'" "C5'" sing N N 161 DC "C5'" "C4'" sing N N 162 DC "C5'" "H5'" sing N N 163 DC "C5'" "H5''" sing N N 164 DC "C4'" "O4'" sing N N 165 DC "C4'" "C3'" sing N N 166 DC "C4'" "H4'" sing N N 167 DC "O4'" "C1'" sing N N 168 DC "C3'" "O3'" sing N N 169 DC "C3'" "C2'" sing N N 170 DC "C3'" "H3'" sing N N 171 DC "O3'" "HO3'" sing N N 172 DC "C2'" "C1'" sing N N 173 DC "C2'" "H2'" sing N N 174 DC "C2'" "H2''" sing N N 175 DC "C1'" N1 sing N N 176 DC "C1'" "H1'" sing N N 177 DC N1 C2 sing N N 178 DC N1 C6 sing N N 179 DC C2 O2 doub N N 180 DC C2 N3 sing N N 181 DC N3 C4 doub N N 182 DC C4 N4 sing N N 183 DC C4 C5 sing N N 184 DC N4 H41 sing N N 185 DC N4 H42 sing N N 186 DC C5 C6 doub N N 187 DC C5 H5 sing N N 188 DC C6 H6 sing N N 189 DG OP3 P sing N N 190 DG OP3 HOP3 sing N N 191 DG P OP1 doub N N 192 DG P OP2 sing N N 193 DG P "O5'" sing N N 194 DG OP2 HOP2 sing N N 195 DG "O5'" "C5'" sing N N 196 DG "C5'" "C4'" sing N N 197 DG "C5'" "H5'" sing N N 198 DG "C5'" "H5''" sing N N 199 DG "C4'" "O4'" sing N N 200 DG "C4'" "C3'" sing N N 201 DG "C4'" "H4'" sing N N 202 DG "O4'" "C1'" sing N N 203 DG "C3'" "O3'" sing N N 204 DG "C3'" "C2'" sing N N 205 DG "C3'" "H3'" sing N N 206 DG "O3'" "HO3'" sing N N 207 DG "C2'" "C1'" sing N N 208 DG "C2'" "H2'" sing N N 209 DG "C2'" "H2''" sing N N 210 DG "C1'" N9 sing N N 211 DG "C1'" "H1'" sing N N 212 DG N9 C8 sing Y N 213 DG N9 C4 sing Y N 214 DG C8 N7 doub Y N 215 DG C8 H8 sing N N 216 DG N7 C5 sing Y N 217 DG C5 C6 sing N N 218 DG C5 C4 doub Y N 219 DG C6 O6 doub N N 220 DG C6 N1 sing N N 221 DG N1 C2 sing N N 222 DG N1 H1 sing N N 223 DG C2 N2 sing N N 224 DG C2 N3 doub N N 225 DG N2 H21 sing N N 226 DG N2 H22 sing N N 227 DG N3 C4 sing N N 228 DT OP3 P sing N N 229 DT OP3 HOP3 sing N N 230 DT P OP1 doub N N 231 DT P OP2 sing N N 232 DT P "O5'" sing N N 233 DT OP2 HOP2 sing N N 234 DT "O5'" "C5'" sing N N 235 DT "C5'" "C4'" sing N N 236 DT "C5'" "H5'" sing N N 237 DT "C5'" "H5''" sing N N 238 DT "C4'" "O4'" sing N N 239 DT "C4'" "C3'" sing N N 240 DT "C4'" "H4'" sing N N 241 DT "O4'" "C1'" sing N N 242 DT "C3'" "O3'" sing N N 243 DT "C3'" "C2'" sing N N 244 DT "C3'" "H3'" sing N N 245 DT "O3'" "HO3'" sing N N 246 DT "C2'" "C1'" sing N N 247 DT "C2'" "H2'" sing N N 248 DT "C2'" "H2''" sing N N 249 DT "C1'" N1 sing N N 250 DT "C1'" "H1'" sing N N 251 DT N1 C2 sing N N 252 DT N1 C6 sing N N 253 DT C2 O2 doub N N 254 DT C2 N3 sing N N 255 DT N3 C4 sing N N 256 DT N3 H3 sing N N 257 DT C4 O4 doub N N 258 DT C4 C5 sing N N 259 DT C5 C7 sing N N 260 DT C5 C6 doub N N 261 DT C7 H71 sing N N 262 DT C7 H72 sing N N 263 DT C7 H73 sing N N 264 DT C6 H6 sing N N 265 GLN N CA sing N N 266 GLN N H sing N N 267 GLN N H2 sing N N 268 GLN CA C sing N N 269 GLN CA CB sing N N 270 GLN CA HA sing N N 271 GLN C O doub N N 272 GLN C OXT sing N N 273 GLN CB CG sing N N 274 GLN CB HB2 sing N N 275 GLN CB HB3 sing N N 276 GLN CG CD sing N N 277 GLN CG HG2 sing N N 278 GLN CG HG3 sing N N 279 GLN CD OE1 doub N N 280 GLN CD NE2 sing N N 281 GLN NE2 HE21 sing N N 282 GLN NE2 HE22 sing N N 283 GLN OXT HXT sing N N 284 GLU N CA sing N N 285 GLU N H sing N N 286 GLU N H2 sing N N 287 GLU CA C sing N N 288 GLU CA CB sing N N 289 GLU CA HA sing N N 290 GLU C O doub N N 291 GLU C OXT sing N N 292 GLU CB CG sing N N 293 GLU CB HB2 sing N N 294 GLU CB HB3 sing N N 295 GLU CG CD sing N N 296 GLU CG HG2 sing N N 297 GLU CG HG3 sing N N 298 GLU CD OE1 doub N N 299 GLU CD OE2 sing N N 300 GLU OE2 HE2 sing N N 301 GLU OXT HXT sing N N 302 GLY N CA sing N N 303 GLY N H sing N N 304 GLY N H2 sing N N 305 GLY CA C sing N N 306 GLY CA HA2 sing N N 307 GLY CA HA3 sing N N 308 GLY C O doub N N 309 GLY C OXT sing N N 310 GLY OXT HXT sing N N 311 HIS N CA sing N N 312 HIS N H sing N N 313 HIS N H2 sing N N 314 HIS CA C sing N N 315 HIS CA CB sing N N 316 HIS CA HA sing N N 317 HIS C O doub N N 318 HIS C OXT sing N N 319 HIS CB CG sing N N 320 HIS CB HB2 sing N N 321 HIS CB HB3 sing N N 322 HIS CG ND1 sing Y N 323 HIS CG CD2 doub Y N 324 HIS ND1 CE1 doub Y N 325 HIS ND1 HD1 sing N N 326 HIS CD2 NE2 sing Y N 327 HIS CD2 HD2 sing N N 328 HIS CE1 NE2 sing Y N 329 HIS CE1 HE1 sing N N 330 HIS NE2 HE2 sing N N 331 HIS OXT HXT sing N N 332 HOH O H1 sing N N 333 HOH O H2 sing N N 334 ILE N CA sing N N 335 ILE N H sing N N 336 ILE N H2 sing N N 337 ILE CA C sing N N 338 ILE CA CB sing N N 339 ILE CA HA sing N N 340 ILE C O doub N N 341 ILE C OXT sing N N 342 ILE CB CG1 sing N N 343 ILE CB CG2 sing N N 344 ILE CB HB sing N N 345 ILE CG1 CD1 sing N N 346 ILE CG1 HG12 sing N N 347 ILE CG1 HG13 sing N N 348 ILE CG2 HG21 sing N N 349 ILE CG2 HG22 sing N N 350 ILE CG2 HG23 sing N N 351 ILE CD1 HD11 sing N N 352 ILE CD1 HD12 sing N N 353 ILE CD1 HD13 sing N N 354 ILE OXT HXT sing N N 355 LEU N CA sing N N 356 LEU N H sing N N 357 LEU N H2 sing N N 358 LEU CA C sing N N 359 LEU CA CB sing N N 360 LEU CA HA sing N N 361 LEU C O doub N N 362 LEU C OXT sing N N 363 LEU CB CG sing N N 364 LEU CB HB2 sing N N 365 LEU CB HB3 sing N N 366 LEU CG CD1 sing N N 367 LEU CG CD2 sing N N 368 LEU CG HG sing N N 369 LEU CD1 HD11 sing N N 370 LEU CD1 HD12 sing N N 371 LEU CD1 HD13 sing N N 372 LEU CD2 HD21 sing N N 373 LEU CD2 HD22 sing N N 374 LEU CD2 HD23 sing N N 375 LEU OXT HXT sing N N 376 LYS N CA sing N N 377 LYS N H sing N N 378 LYS N H2 sing N N 379 LYS CA C sing N N 380 LYS CA CB sing N N 381 LYS CA HA sing N N 382 LYS C O doub N N 383 LYS C OXT sing N N 384 LYS CB CG sing N N 385 LYS CB HB2 sing N N 386 LYS CB HB3 sing N N 387 LYS CG CD sing N N 388 LYS CG HG2 sing N N 389 LYS CG HG3 sing N N 390 LYS CD CE sing N N 391 LYS CD HD2 sing N N 392 LYS CD HD3 sing N N 393 LYS CE NZ sing N N 394 LYS CE HE2 sing N N 395 LYS CE HE3 sing N N 396 LYS NZ HZ1 sing N N 397 LYS NZ HZ2 sing N N 398 LYS NZ HZ3 sing N N 399 LYS OXT HXT sing N N 400 PRO N CA sing N N 401 PRO N CD sing N N 402 PRO N H sing N N 403 PRO CA C sing N N 404 PRO CA CB sing N N 405 PRO CA HA sing N N 406 PRO C O doub N N 407 PRO C OXT sing N N 408 PRO CB CG sing N N 409 PRO CB HB2 sing N N 410 PRO CB HB3 sing N N 411 PRO CG CD sing N N 412 PRO CG HG2 sing N N 413 PRO CG HG3 sing N N 414 PRO CD HD2 sing N N 415 PRO CD HD3 sing N N 416 PRO OXT HXT sing N N 417 SER N CA sing N N 418 SER N H sing N N 419 SER N H2 sing N N 420 SER CA C sing N N 421 SER CA CB sing N N 422 SER CA HA sing N N 423 SER C O doub N N 424 SER C OXT sing N N 425 SER CB OG sing N N 426 SER CB HB2 sing N N 427 SER CB HB3 sing N N 428 SER OG HG sing N N 429 SER OXT HXT sing N N 430 THR N CA sing N N 431 THR N H sing N N 432 THR N H2 sing N N 433 THR CA C sing N N 434 THR CA CB sing N N 435 THR CA HA sing N N 436 THR C O doub N N 437 THR C OXT sing N N 438 THR CB OG1 sing N N 439 THR CB CG2 sing N N 440 THR CB HB sing N N 441 THR OG1 HG1 sing N N 442 THR CG2 HG21 sing N N 443 THR CG2 HG22 sing N N 444 THR CG2 HG23 sing N N 445 THR OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 VAL N CA sing N N 471 VAL N H sing N N 472 VAL N H2 sing N N 473 VAL CA C sing N N 474 VAL CA CB sing N N 475 VAL CA HA sing N N 476 VAL C O doub N N 477 VAL C OXT sing N N 478 VAL CB CG1 sing N N 479 VAL CB CG2 sing N N 480 VAL CB HB sing N N 481 VAL CG1 HG11 sing N N 482 VAL CG1 HG12 sing N N 483 VAL CG1 HG13 sing N N 484 VAL CG2 HG21 sing N N 485 VAL CG2 HG22 sing N N 486 VAL CG2 HG23 sing N N 487 VAL OXT HXT sing N N 488 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ZME 'double helix' 1ZME 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 17 1_555 0.438 -0.241 0.467 -7.249 -0.941 3.046 1 A_DC2:DG17_B A 2 ? B 17 ? 19 1 1 A DG 3 1_555 B DC 16 1_555 0.217 0.213 -0.388 -2.986 -19.742 -5.606 2 A_DG3:DC16_B A 3 ? B 16 ? ? ? 1 A DG 4 1_555 B DC 15 1_555 -0.126 -0.039 0.112 6.885 5.385 3.927 3 A_DG4:DC15_B A 4 ? B 15 ? 19 1 1 A DG 5 1_555 B DC 14 1_555 0.017 -0.243 0.044 5.778 -6.218 -2.446 4 A_DG5:DC14_B A 5 ? B 14 ? 19 1 1 A DA 6 1_555 B 5IU 13 1_555 0.033 -0.232 -0.112 -4.723 -13.645 1.770 5 A_DA6:5IU13_B A 6 ? B 13 ? 20 1 1 A DA 7 1_555 B DT 12 1_555 0.152 -0.150 0.218 8.348 -12.130 -0.080 6 A_DA7:DT12_B A 7 ? B 12 ? 20 1 1 A DG 8 1_555 B DC 11 1_555 0.180 -0.228 0.234 -0.065 -15.892 0.503 7 A_DG8:DC11_B A 8 ? B 11 ? 19 1 1 A DC 9 1_555 B DG 10 1_555 -0.199 -0.165 0.542 -14.215 -6.638 -2.587 8 A_DC9:DG10_B A 9 ? B 10 ? 19 1 1 A DC 10 1_555 B DG 9 1_555 0.084 0.002 0.045 -7.044 -3.913 -2.125 9 A_DC10:DG9_B A 10 ? B 9 ? 19 1 1 A DA 11 1_555 B DT 8 1_555 -0.381 -0.107 0.108 7.050 -13.909 5.412 10 A_DA11:DT8_B A 11 ? B 8 ? 20 1 1 A DA 12 1_555 B 5IU 7 1_555 0.613 0.049 0.028 8.188 -13.671 10.183 11 A_DA12:5IU7_B A 12 ? B 7 ? 20 1 1 A DC 13 1_555 B DG 6 1_555 -0.395 -0.125 -0.238 11.389 -13.702 4.592 12 A_DC13:DG6_B A 13 ? B 6 ? 19 1 1 A DT 14 1_555 B DA 5 1_555 -0.233 0.006 -0.139 -3.672 -10.689 -5.685 13 A_DT14:DA5_B A 14 ? B 5 ? 20 1 1 A DC 15 1_555 B DG 4 1_555 0.495 -0.334 -0.127 -3.741 -2.209 0.545 14 A_DC15:DG4_B A 15 ? B 4 ? 19 1 1 A DC 16 1_555 B DG 3 1_555 0.184 -0.243 0.321 1.674 -17.144 -1.184 15 A_DC16:DG3_B A 16 ? B 3 ? 19 1 1 A DG 17 1_555 B DC 2 1_555 0.252 -0.339 0.065 1.221 -6.261 -0.821 16 A_DG17:DC2_B A 17 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 17 1_555 A DG 3 1_555 B DC 16 1_555 -1.707 1.205 3.204 1.838 3.496 33.760 1.511 3.210 3.214 5.995 -3.151 33.984 1 AA_DC2DG3:DC16DG17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DG 3 1_555 B DC 16 1_555 A DG 4 1_555 B DC 15 1_555 1.619 0.587 3.055 -2.008 -4.994 34.775 1.648 -2.951 2.851 -8.295 3.335 35.176 2 AA_DG3DG4:DC15DC16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DG 4 1_555 B DC 15 1_555 A DG 5 1_555 B DC 14 1_555 -1.342 0.483 3.595 -4.778 4.211 31.993 0.026 1.444 3.782 7.546 8.563 32.605 3 AA_DG4DG5:DC14DC15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A DG 5 1_555 B DC 14 1_555 A DA 6 1_555 B 5IU 13 1_555 0.601 -0.107 3.466 4.216 7.360 38.359 -1.095 -0.358 3.433 11.037 -6.322 39.251 4 AA_DG5DA6:5IU13DC14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DA 6 1_555 B 5IU 13 1_555 A DA 7 1_555 B DT 12 1_555 -0.663 0.103 3.010 -3.080 3.710 33.772 -0.373 0.676 3.050 6.346 5.268 34.104 5 AA_DA6DA7:DT125IU13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A DA 7 1_555 B DT 12 1_555 A DG 8 1_555 B DC 11 1_555 0.157 -0.711 3.472 -0.288 7.122 33.329 -2.393 -0.316 3.254 12.244 0.495 34.061 6 AA_DA7DG8:DC11DT12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A DG 8 1_555 B DC 11 1_555 A DC 9 1_555 B DG 10 1_555 -0.445 0.093 3.612 -3.650 2.543 36.796 -0.232 0.156 3.636 4.010 5.757 37.054 7 AA_DG8DC9:DG10DC11_BB A 8 ? B 11 ? A 9 ? B 10 ? 1 A DC 9 1_555 B DG 10 1_555 A DC 10 1_555 B DG 9 1_555 0.538 0.460 3.647 3.313 23.493 24.892 -3.637 -0.291 3.030 43.830 -6.182 34.258 8 AA_DC9DC10:DG9DG10_BB A 9 ? B 10 ? A 10 ? B 9 ? 1 A DC 10 1_555 B DG 9 1_555 A DA 11 1_555 B DT 8 1_555 -0.120 0.467 3.093 0.759 6.788 29.086 -0.451 0.385 3.115 13.285 -1.486 29.860 9 AA_DC10DA11:DT8DG9_BB A 10 ? B 9 ? A 11 ? B 8 ? 1 A DA 11 1_555 B DT 8 1_555 A DA 12 1_555 B 5IU 7 1_555 0.443 -0.028 3.302 1.260 4.249 35.989 -0.648 -0.534 3.290 6.845 -2.030 36.252 10 AA_DA11DA12:5IU7DT8_BB A 11 ? B 8 ? A 12 ? B 7 ? 1 A DA 12 1_555 B 5IU 7 1_555 A DC 13 1_555 B DG 6 1_555 0.363 -1.096 3.256 1.707 1.750 24.558 -3.093 -0.335 3.189 4.101 -4.000 24.678 11 AA_DA12DC13:DG65IU7_BB A 12 ? B 7 ? A 13 ? B 6 ? 1 A DC 13 1_555 B DG 6 1_555 A DT 14 1_555 B DA 5 1_555 -1.034 -0.233 3.736 -0.613 8.171 35.494 -1.666 1.558 3.612 13.187 0.990 36.398 12 AA_DC13DT14:DA5DG6_BB A 13 ? B 6 ? A 14 ? B 5 ? 1 A DT 14 1_555 B DA 5 1_555 A DC 15 1_555 B DG 4 1_555 1.319 0.925 3.575 2.954 1.786 38.294 1.157 -1.594 3.700 2.715 -4.492 38.444 13 AA_DT14DC15:DG4DA5_BB A 14 ? B 5 ? A 15 ? B 4 ? 1 A DC 15 1_555 B DG 4 1_555 A DC 16 1_555 B DG 3 1_555 -1.405 0.471 3.363 -3.898 -4.859 32.987 1.648 1.767 3.400 -8.463 6.789 33.554 14 AA_DC15DC16:DG3DG4_BB A 15 ? B 4 ? A 16 ? B 3 ? 1 A DC 16 1_555 B DG 3 1_555 A DG 17 1_555 B DC 2 1_555 0.955 1.111 3.508 3.062 5.975 38.863 0.865 -1.015 3.694 8.898 -4.561 39.416 15 AA_DC16DG17:DC2DG3_BB A 16 ? B 3 ? A 17 ? B 2 ? # _atom_sites.entry_id 1ZME _atom_sites.fract_transf_matrix[1][1] 0.008220 _atom_sites.fract_transf_matrix[1][2] 0.004746 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009492 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025575 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O P S ZN # loop_