HEADER ANTIMICROBIAL PROTEIN 10-MAY-05 1ZMH TITLE CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL PEPTIDE 2, HNP-2 (VARIANT GLY16- TITLE 2 > D-ALA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL DEFENSIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HNP-2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEFA3, DEF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIMICROBIAL PROTEIN, ALPHA-DEFENSIN, D-AMINO ACID SUBSTITUTION EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.PRAHL,W.LU REVDAT 7 23-AUG-23 1ZMH 1 REMARK REVDAT 6 20-OCT-21 1ZMH 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 1ZMH 1 REMARK REVDAT 4 13-JUL-11 1ZMH 1 VERSN REVDAT 3 24-FEB-09 1ZMH 1 VERSN REVDAT 2 20-DEC-05 1ZMH 1 JRNL REVDAT 1 16-AUG-05 1ZMH 0 JRNL AUTH C.XIE,A.PRAHL,B.ERICKSEN,Z.WU,P.ZENG,X.LI,W.Y.LU, JRNL AUTH 2 J.LUBKOWSKI,W.LU JRNL TITL RECONSTRUCTION OF THE CONSERVED BETA-BULGE IN MAMMALIAN JRNL TITL 2 DEFENSINS USING D-AMINO ACIDS. JRNL REF J.BIOL.CHEM. V. 280 32921 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15894545 JRNL DOI 10.1074/JBC.M503084200 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 19047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2226 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1410 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1008 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1360 ; 2.023 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 112 ; 7.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;19.474 ;17.907 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 142 ;11.783 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.172 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 128 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 752 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 425 ; 0.245 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 685 ; 0.331 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 120 ; 0.174 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.280 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 64 ; 0.351 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 587 ; 2.945 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 911 ; 3.976 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 500 ; 3.276 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 449 ; 4.267 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1087 ; 2.467 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 111 ; 9.970 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 978 ; 5.673 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3019 -5.5531 -0.1274 REMARK 3 T TENSOR REMARK 3 T11: -0.0120 T22: 0.0112 REMARK 3 T33: -0.0268 T12: 0.0337 REMARK 3 T13: 0.0165 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 3.5597 L22: 0.8835 REMARK 3 L33: 1.9381 L12: 0.1461 REMARK 3 L13: 1.4378 L23: -0.4426 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0064 S13: -0.2264 REMARK 3 S21: -0.0260 S22: -0.0860 S23: -0.0521 REMARK 3 S31: 0.1169 S32: 0.0182 S33: 0.0505 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6786 4.5719 8.2339 REMARK 3 T TENSOR REMARK 3 T11: -0.0183 T22: -0.0058 REMARK 3 T33: -0.0275 T12: 0.0031 REMARK 3 T13: 0.0134 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.4086 L22: 1.1312 REMARK 3 L33: 4.4576 L12: -0.7020 REMARK 3 L13: -1.6631 L23: 0.4321 REMARK 3 S TENSOR REMARK 3 S11: 0.1615 S12: 0.0471 S13: 0.2124 REMARK 3 S21: 0.0204 S22: -0.0629 S23: -0.0519 REMARK 3 S31: -0.0948 S32: 0.0734 S33: -0.0986 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 29 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7493 30.1840 36.9474 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: -0.0214 REMARK 3 T33: -0.0135 T12: 0.0017 REMARK 3 T13: 0.0114 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.4930 L22: 1.0341 REMARK 3 L33: 1.8838 L12: -0.0558 REMARK 3 L13: -0.8368 L23: 0.4656 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: -0.0018 S13: 0.0609 REMARK 3 S21: -0.0091 S22: -0.0119 S23: 0.0177 REMARK 3 S31: -0.0331 S32: -0.0219 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 29 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3218 19.7275 29.6211 REMARK 3 T TENSOR REMARK 3 T11: 0.0058 T22: -0.0228 REMARK 3 T33: -0.0220 T12: 0.0089 REMARK 3 T13: 0.0001 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 3.6463 L22: 0.7361 REMARK 3 L33: 1.9461 L12: 0.2791 REMARK 3 L13: 1.0035 L23: -0.5335 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: 0.0936 S13: -0.0382 REMARK 3 S21: -0.0128 S22: 0.0654 S23: 0.0253 REMARK 3 S31: -0.0017 S32: -0.0952 S33: -0.0897 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20719 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: BASED ON MONOMER OF HNP-3 (PDB ENTRY 1DEF) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, PEG8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 42.03800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.31742 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.26305 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 39 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 435 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 21 CG CD OE1 NE2 REMARK 480 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 33 O HOH A 50 2555 1.73 REMARK 500 O HOH B 431 O HOH C 432 2646 1.79 REMARK 500 O HOH A 51 O HOH B 422 1545 1.86 REMARK 500 O HOH C 418 O HOH D 310 1565 1.96 REMARK 500 O HOH B 426 O HOH B 429 1545 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DFN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RELATED DEFENSIN REMARK 900 RELATED ID: 1ZMI RELATED DB: PDB REMARK 900 RELATED ID: 1ZMK RELATED DB: PDB REMARK 900 RELATED ID: 1ZMM RELATED DB: PDB REMARK 900 RELATED ID: 1ZMP RELATED DB: PDB REMARK 900 RELATED ID: 1ZMQ RELATED DB: PDB DBREF 1ZMH A 1 29 UNP P59666 DEF3_HUMAN 66 94 DBREF 1ZMH B 1 29 UNP P59666 DEF3_HUMAN 66 94 DBREF 1ZMH C 1 29 UNP P59666 DEF3_HUMAN 66 94 DBREF 1ZMH D 1 29 UNP P59666 DEF3_HUMAN 66 94 SEQADV 1ZMH DAL A 16 UNP P59666 GLY 81 ENGINEERED MUTATION SEQADV 1ZMH DAL B 16 UNP P59666 GLY 81 ENGINEERED MUTATION SEQADV 1ZMH DAL C 16 UNP P59666 GLY 81 ENGINEERED MUTATION SEQADV 1ZMH DAL D 16 UNP P59666 GLY 81 ENGINEERED MUTATION SEQRES 1 A 29 CYS TYR CYS ARG ILE PRO ALA CYS ILE ALA GLY GLU ARG SEQRES 2 A 29 ARG TYR DAL THR CYS ILE TYR GLN GLY ARG LEU TRP ALA SEQRES 3 A 29 PHE CYS CYS SEQRES 1 B 29 CYS TYR CYS ARG ILE PRO ALA CYS ILE ALA GLY GLU ARG SEQRES 2 B 29 ARG TYR DAL THR CYS ILE TYR GLN GLY ARG LEU TRP ALA SEQRES 3 B 29 PHE CYS CYS SEQRES 1 C 29 CYS TYR CYS ARG ILE PRO ALA CYS ILE ALA GLY GLU ARG SEQRES 2 C 29 ARG TYR DAL THR CYS ILE TYR GLN GLY ARG LEU TRP ALA SEQRES 3 C 29 PHE CYS CYS SEQRES 1 D 29 CYS TYR CYS ARG ILE PRO ALA CYS ILE ALA GLY GLU ARG SEQRES 2 D 29 ARG TYR DAL THR CYS ILE TYR GLN GLY ARG LEU TRP ALA SEQRES 3 D 29 PHE CYS CYS MODRES 1ZMH DAL A 16 ALA D-ALANINE MODRES 1ZMH DAL B 16 ALA D-ALANINE MODRES 1ZMH DAL C 16 ALA D-ALANINE MODRES 1ZMH DAL D 16 ALA D-ALANINE HET DAL A 16 5 HET DAL B 16 5 HET DAL C 16 5 HET DAL D 16 5 HET SO4 B 403 5 HET P6G B 201 19 HET GOL B 301 6 HET SO4 C 401 5 HET SO4 C 402 5 HET GOL D 302 6 HETNAM DAL D-ALANINE HETNAM SO4 SULFATE ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 DAL 4(C3 H7 N O2) FORMUL 5 SO4 3(O4 S 2-) FORMUL 6 P6G C12 H26 O7 FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 HOH *109(H2 O) SHEET 1 A 6 TYR A 2 ARG A 4 0 SHEET 2 A 6 ARG A 23 CYS A 29 -1 O ALA A 26 N ARG A 4 SHEET 3 A 6 ARG A 13 TYR A 20 -1 N CYS A 18 O TRP A 25 SHEET 4 A 6 ARG B 13 TYR B 20 -1 O ILE B 19 N THR A 17 SHEET 5 A 6 ARG B 23 CYS B 29 -1 O TRP B 25 N CYS B 18 SHEET 6 A 6 TYR B 2 ARG B 4 -1 N ARG B 4 O ALA B 26 SHEET 1 B 6 TYR C 2 ARG C 4 0 SHEET 2 B 6 ARG C 23 CYS C 29 -1 O ALA C 26 N ARG C 4 SHEET 3 B 6 ARG C 13 TYR C 20 -1 N TYR C 15 O PHE C 27 SHEET 4 B 6 ARG D 13 TYR D 20 -1 O ILE D 19 N THR C 17 SHEET 5 B 6 ARG D 23 CYS D 29 -1 O CYS D 29 N ARG D 13 SHEET 6 B 6 TYR D 2 ARG D 4 -1 N TYR D 2 O CYS D 28 SSBOND 1 CYS A 1 CYS A 29 1555 1555 2.08 SSBOND 2 CYS A 3 CYS A 18 1555 1555 2.03 SSBOND 3 CYS A 8 CYS A 28 1555 1555 2.01 SSBOND 4 CYS B 1 CYS B 29 1555 1555 2.09 SSBOND 5 CYS B 3 CYS B 18 1555 1555 2.01 SSBOND 6 CYS B 8 CYS B 28 1555 1555 2.05 SSBOND 7 CYS C 1 CYS C 29 1555 1555 2.09 SSBOND 8 CYS C 3 CYS C 18 1555 1555 2.03 SSBOND 9 CYS C 8 CYS C 28 1555 1555 2.02 SSBOND 10 CYS D 1 CYS D 29 1555 1555 2.00 SSBOND 11 CYS D 3 CYS D 18 1555 1555 2.05 SSBOND 12 CYS D 8 CYS D 28 1555 1555 1.99 LINK C TYR A 15 N DAL A 16 1555 1555 1.33 LINK C DAL A 16 N THR A 17 1555 1555 1.34 LINK C TYR B 15 N DAL B 16 1555 1555 1.33 LINK C DAL B 16 N THR B 17 1555 1555 1.32 LINK C TYR C 15 N DAL C 16 1555 1555 1.33 LINK C DAL C 16 N THR C 17 1555 1555 1.33 LINK C TYR D 15 N DAL D 16 1555 1555 1.33 LINK C DAL D 16 N THR D 17 1555 1555 1.34 CISPEP 1 ILE A 5 PRO A 6 0 0.77 CISPEP 2 ILE B 5 PRO B 6 0 6.66 CISPEP 3 ILE C 5 PRO C 6 0 7.85 CISPEP 4 ILE D 5 PRO D 6 0 0.09 SITE 1 AC1 6 ARG A 13 TYR A 15 ARG C 13 ARG C 14 SITE 2 AC1 6 HOH C 419 HOH C 420 SITE 1 AC2 3 ARG A 13 HOH C 411 HOH C 426 SITE 1 AC3 4 ARG B 13 TYR B 15 ARG D 13 ARG D 14 SITE 1 AC4 14 CYS A 1 TYR A 2 CYS A 3 TRP A 25 SITE 2 AC4 14 PHE A 27 CYS B 1 TYR B 2 CYS B 3 SITE 3 AC4 14 TYR B 20 PHE B 27 HOH B 408 HOH B 410 SITE 4 AC4 14 HOH B 416 HOH B 418 SITE 1 AC5 3 ARG B 14 THR B 17 HOH B 404 SITE 1 AC6 2 TYR D 15 HOH D 322 CRYST1 42.038 26.051 61.587 90.00 105.79 90.00 P 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023788 0.000000 0.006727 0.00000 SCALE2 0.000000 0.038386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016874 0.00000