HEADER ANTIMICROBIAL PROTEIN 10-MAY-05 1ZMM TITLE CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL DEFENSIN 4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HNP-4, HP-4, DEFENSIN, ALPHA 4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEFA4, DEF4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN ALPHA-DEFENSIN, ANTIMICROBIAL PEPTIDE, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.SZYK,W.LU REVDAT 7 30-OCT-24 1ZMM 1 REMARK REVDAT 6 23-AUG-23 1ZMM 1 REMARK REVDAT 5 11-OCT-17 1ZMM 1 REMARK REVDAT 4 13-JUL-11 1ZMM 1 VERSN REVDAT 3 24-FEB-09 1ZMM 1 VERSN REVDAT 2 12-DEC-06 1ZMM 1 JRNL REVDAT 1 30-MAY-06 1ZMM 0 JRNL AUTH A.SZYK,Z.WU,K.TUCKER,D.YANG,W.LU,J.LUBKOWSKI JRNL TITL CRYSTAL STRUCTURES OF HUMAN {ALPHA}-DEFENSINS HNP4, HD5, AND JRNL TITL 2 HD6. JRNL REF PROTEIN SCI. V. 15 2749 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 17088326 JRNL DOI 10.1110/PS.062336606 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 15127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1712 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 982 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.670 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1025 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 986 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1384 ; 1.615 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2251 ; 0.697 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 6.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1098 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 252 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 146 ; 0.223 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1206 ; 0.274 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 749 ; 0.083 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 135 ; 0.276 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.277 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 83 ; 0.368 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.264 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 634 ; 1.450 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1033 ; 2.283 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 391 ; 1.686 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 351 ; 2.664 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1990 2.6713 6.9339 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.0218 REMARK 3 T33: 0.0308 T12: -0.0044 REMARK 3 T13: -0.0183 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.6762 L22: 2.8225 REMARK 3 L33: 0.8041 L12: -0.0036 REMARK 3 L13: 1.1107 L23: 1.0461 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: 0.0339 S13: -0.0658 REMARK 3 S21: 0.3333 S22: -0.0172 S23: -0.0780 REMARK 3 S31: 0.0738 S32: 0.0093 S33: -0.0787 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3901 -2.4637 -2.3387 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0538 REMARK 3 T33: 0.0169 T12: 0.0003 REMARK 3 T13: 0.0230 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.8769 L22: 1.2857 REMARK 3 L33: 1.2854 L12: 1.3000 REMARK 3 L13: 0.2317 L23: 0.8119 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: 0.0649 S13: 0.0205 REMARK 3 S21: 0.0188 S22: -0.0174 S23: 0.0825 REMARK 3 S31: 0.0691 S32: -0.0288 S33: 0.0802 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 31 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4019 3.0797 25.9848 REMARK 3 T TENSOR REMARK 3 T11: 0.0419 T22: 0.0217 REMARK 3 T33: 0.0283 T12: 0.0080 REMARK 3 T13: 0.0061 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.1348 L22: 4.4399 REMARK 3 L33: 0.7996 L12: -1.0876 REMARK 3 L13: -1.1403 L23: -1.0644 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: -0.0295 S13: 0.1062 REMARK 3 S21: 0.2572 S22: 0.1757 S23: -0.0619 REMARK 3 S31: -0.0497 S32: -0.0963 S33: -0.1219 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 33 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0415 8.2968 23.4352 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.0423 REMARK 3 T33: 0.0183 T12: -0.0046 REMARK 3 T13: 0.0156 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.3126 L22: 1.5103 REMARK 3 L33: 2.7189 L12: 2.1214 REMARK 3 L13: 2.3624 L23: 0.3989 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: 0.0190 S13: -0.1949 REMARK 3 S21: -0.0409 S22: -0.0504 S23: -0.1193 REMARK 3 S31: -0.0595 S32: 0.0497 S33: -0.0073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15948 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23300 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: BASED ON THE MONOMER OF HNP-3 (PDB ID CODE 1DFN) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, HEPES, 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, PEG400, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.00200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.62750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.00200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.62750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHOR STATES THE BIOLOGICAL UNIT IS A PROBABLE REMARK 300 MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 32 REMARK 465 VAL A 33 REMARK 465 ARG C 32 REMARK 465 VAL C 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 110 O HOH C 119 1.36 REMARK 500 O HOH C 198 O HOH D 115 1.85 REMARK 500 O HOH C 158 O HOH D 133 1.90 REMARK 500 O PHE C 26 O HOH C 119 2.09 REMARK 500 OG1 THR C 12 O HOH C 179 2.16 REMARK 500 O HOH C 117 O HOH C 135 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 191 O HOH C 149 1554 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 7 -84.76 -127.46 REMARK 500 VAL B 7 -55.83 -129.76 REMARK 500 VAL C 7 -97.20 -126.64 REMARK 500 VAL D 7 -55.52 -127.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DFN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RELATED ALPHA-DEFENSIN REMARK 900 RELATED ID: 1ZMH RELATED DB: PDB REMARK 900 RELATED ID: 1ZMI RELATED DB: PDB REMARK 900 RELATED ID: 1ZMK RELATED DB: PDB REMARK 900 RELATED ID: 1ZMP RELATED DB: PDB REMARK 900 RELATED ID: 1ZMQ RELATED DB: PDB DBREF 1ZMM A 1 33 UNP P12838 DEF4_HUMAN 64 96 DBREF 1ZMM B 1 33 UNP P12838 DEF4_HUMAN 64 96 DBREF 1ZMM C 1 33 UNP P12838 DEF4_HUMAN 64 96 DBREF 1ZMM D 1 33 UNP P12838 DEF4_HUMAN 64 96 SEQRES 1 A 33 VAL CYS SER CYS ARG LEU VAL PHE CYS ARG ARG THR GLU SEQRES 2 A 33 LEU ARG VAL GLY ASN CYS LEU ILE GLY GLY VAL SER PHE SEQRES 3 A 33 THR TYR CYS CYS THR ARG VAL SEQRES 1 B 33 VAL CYS SER CYS ARG LEU VAL PHE CYS ARG ARG THR GLU SEQRES 2 B 33 LEU ARG VAL GLY ASN CYS LEU ILE GLY GLY VAL SER PHE SEQRES 3 B 33 THR TYR CYS CYS THR ARG VAL SEQRES 1 C 33 VAL CYS SER CYS ARG LEU VAL PHE CYS ARG ARG THR GLU SEQRES 2 C 33 LEU ARG VAL GLY ASN CYS LEU ILE GLY GLY VAL SER PHE SEQRES 3 C 33 THR TYR CYS CYS THR ARG VAL SEQRES 1 D 33 VAL CYS SER CYS ARG LEU VAL PHE CYS ARG ARG THR GLU SEQRES 2 D 33 LEU ARG VAL GLY ASN CYS LEU ILE GLY GLY VAL SER PHE SEQRES 3 D 33 THR TYR CYS CYS THR ARG VAL FORMUL 5 HOH *104(H2 O) SHEET 1 A 6 CYS A 2 ARG A 5 0 SHEET 2 A 6 VAL A 24 CYS A 30 -1 O THR A 27 N ARG A 5 SHEET 3 A 6 LEU A 14 ILE A 21 -1 N VAL A 16 O TYR A 28 SHEET 4 A 6 LEU B 14 ILE B 21 -1 O LEU B 20 N ASN A 18 SHEET 5 A 6 VAL B 24 CYS B 30 -1 O TYR B 28 N VAL B 16 SHEET 6 A 6 CYS B 2 ARG B 5 -1 N ARG B 5 O THR B 27 SHEET 1 B 6 CYS C 2 ARG C 5 0 SHEET 2 B 6 VAL C 24 CYS C 30 -1 O THR C 27 N ARG C 5 SHEET 3 B 6 LEU C 14 ILE C 21 -1 N VAL C 16 O TYR C 28 SHEET 4 B 6 GLU D 13 ILE D 21 -1 O LEU D 20 N ASN C 18 SHEET 5 B 6 VAL D 24 THR D 31 -1 O PHE D 26 N CYS D 19 SHEET 6 B 6 CYS D 2 ARG D 5 -1 N ARG D 5 O THR D 27 SSBOND 1 CYS A 2 CYS A 30 1555 1555 2.04 SSBOND 2 CYS A 4 CYS A 19 1555 1555 2.04 SSBOND 3 CYS A 9 CYS A 29 1555 1555 2.05 SSBOND 4 CYS B 2 CYS B 30 1555 1555 2.02 SSBOND 5 CYS B 4 CYS B 19 1555 1555 2.02 SSBOND 6 CYS B 9 CYS B 29 1555 1555 2.02 SSBOND 7 CYS C 2 CYS C 30 1555 1555 2.06 SSBOND 8 CYS C 4 CYS C 19 1555 1555 2.05 SSBOND 9 CYS C 9 CYS C 29 1555 1555 2.04 SSBOND 10 CYS D 2 CYS D 30 1555 1555 2.04 SSBOND 11 CYS D 4 CYS D 19 1555 1555 2.02 SSBOND 12 CYS D 9 CYS D 29 1555 1555 2.02 CRYST1 72.004 39.255 48.118 90.00 110.08 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013888 0.000000 0.005077 0.00000 SCALE2 0.000000 0.025474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022127 0.00000 CONECT 13 233 CONECT 25 154 CONECT 68 227 CONECT 154 25 CONECT 227 68 CONECT 233 13 CONECT 254 474 CONECT 266 395 CONECT 313 468 CONECT 395 266 CONECT 468 313 CONECT 474 254 CONECT 517 735 CONECT 531 656 CONECT 574 729 CONECT 656 531 CONECT 729 574 CONECT 735 517 CONECT 756 980 CONECT 768 901 CONECT 815 974 CONECT 901 768 CONECT 974 815 CONECT 980 756 MASTER 404 0 0 0 12 0 0 6 1086 4 24 12 END