HEADER ANTIMICROBIAL PROTEIN 10-MAY-05 1ZMQ TITLE CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN 6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DEFENSIN, ALPHA 6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEFA6, DEF6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN INTESTINAL ALPHA-DEFENSIN, PANETH CELLS DEFENSIN, KEYWDS 2 ANTIMICROBIAL, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.SZYK,W.LU REVDAT 7 03-APR-24 1ZMQ 1 REMARK REVDAT 6 11-OCT-17 1ZMQ 1 REMARK REVDAT 5 16-NOV-11 1ZMQ 1 HETATM REVDAT 4 13-JUL-11 1ZMQ 1 VERSN REVDAT 3 24-FEB-09 1ZMQ 1 VERSN REVDAT 2 12-DEC-06 1ZMQ 1 JRNL REVDAT 1 30-MAY-06 1ZMQ 0 JRNL AUTH A.SZYK,Z.WU,K.TUCKER,D.YANG,W.LU,J.LUBKOWSKI JRNL TITL CRYSTAL STRUCTURES OF HUMAN {ALPHA}-DEFENSINS HNP4, HD5, AND JRNL TITL 2 HD6. JRNL REF PROTEIN SCI. V. 15 2749 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 17088326 JRNL DOI 10.1110/PS.062336606 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 16138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1056 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1424 ; 1.670 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 6.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 148 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 804 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 439 ; 0.270 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 257 ; 0.322 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.266 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.272 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 632 ; 1.290 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1012 ; 2.131 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 424 ; 1.659 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 412 ; 2.686 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6365 13.3118 40.7353 REMARK 3 T TENSOR REMARK 3 T11: 0.0006 T22: 0.1323 REMARK 3 T33: 0.0371 T12: -0.0067 REMARK 3 T13: -0.0035 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.7251 L22: 1.5294 REMARK 3 L33: 3.1227 L12: 0.7566 REMARK 3 L13: -2.3049 L23: -1.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.2047 S13: 0.0669 REMARK 3 S21: -0.0222 S22: 0.0280 S23: -0.0095 REMARK 3 S31: 0.0683 S32: -0.3512 S33: 0.0140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 32 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3006 15.8939 57.4541 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0901 REMARK 3 T33: 0.0538 T12: -0.0335 REMARK 3 T13: 0.0056 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.1469 L22: 0.4456 REMARK 3 L33: 3.3218 L12: 0.2158 REMARK 3 L13: -2.4661 L23: -0.9944 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.1592 S13: 0.0694 REMARK 3 S21: 0.0418 S22: -0.0058 S23: 0.0234 REMARK 3 S31: -0.0693 S32: 0.2437 S33: -0.0821 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7852 14.5875 39.5199 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.0472 REMARK 3 T33: 0.0617 T12: 0.0018 REMARK 3 T13: -0.0012 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.0363 L22: 0.5132 REMARK 3 L33: 1.4240 L12: 0.1645 REMARK 3 L13: -0.7546 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.0401 S13: 0.0316 REMARK 3 S21: 0.0443 S22: 0.0045 S23: -0.0069 REMARK 3 S31: 0.0778 S32: -0.0321 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 32 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1608 1.6313 59.2980 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.0390 REMARK 3 T33: 0.0353 T12: -0.0115 REMARK 3 T13: 0.0099 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.6489 L22: 0.5834 REMARK 3 L33: 3.1256 L12: 0.2516 REMARK 3 L13: -0.7659 L23: -1.0668 REMARK 3 S TENSOR REMARK 3 S11: -0.1080 S12: 0.0518 S13: -0.0212 REMARK 3 S21: -0.1405 S22: -0.0093 S23: 0.0124 REMARK 3 S31: 0.4603 S32: -0.0259 S33: 0.1173 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: EXPERIMENTAL PHASES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE TRIHYDRATE, 2-METHYL REMARK 280 -2,4-PENTANEDIOL, CALCIUM CHLORIDE DEHYDRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.64850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.03400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.03400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.32425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.03400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.03400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.97275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.03400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.03400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.32425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.03400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.03400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.97275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.64850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHOR STATES THE BIOLOGICAL UNIT IS A PROBABLE REMARK 300 MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 292 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CL CL A 501 O HOH C 281 1.27 REMARK 500 NH1 ARG B 8 O HOH B 196 1.73 REMARK 500 OD1 ASN B 26 O HOH B 246 1.93 REMARK 500 NH1 ARG C 28 O HOH C 156 1.96 REMARK 500 OG1 THR A 13 O HOH A 221 1.97 REMARK 500 NE ARG C 28 O HOH C 125 2.04 REMARK 500 N GLY B 24 O HOH B 244 2.05 REMARK 500 O HOH A 224 O HOH A 275 2.06 REMARK 500 CB VAL B 22 O HOH B 257 2.08 REMARK 500 O HOH B 174 O HOH B 241 2.10 REMARK 500 O HOH C 153 O HOH C 176 2.10 REMARK 500 O HOH D 194 O HOH D 264 2.14 REMARK 500 CB MET B 23 O HOH B 244 2.18 REMARK 500 CB THR A 19 O HOH A 212 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CL CL D 503 O HOH A 242 3545 1.66 REMARK 500 O HOH B 128 O HOH C 281 4554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 28 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 28 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 17 58.84 -117.38 REMARK 500 MET B 23 -124.41 41.82 REMARK 500 TYR C 17 55.64 -110.06 REMARK 500 MET D 23 -124.89 47.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DFN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RELATED HUMAN ALPHA-DEFENSIN REMARK 900 RELATED ID: 1ZMH RELATED DB: PDB REMARK 900 RELATED ID: 1ZMI RELATED DB: PDB REMARK 900 RELATED ID: 1ZMK RELATED DB: PDB REMARK 900 RELATED ID: 1ZMM RELATED DB: PDB REMARK 900 RELATED ID: 1ZMP RELATED DB: PDB DBREF 1ZMQ A 1 32 UNP Q01524 DEF6_HUMAN 69 100 DBREF 1ZMQ B 1 32 UNP Q01524 DEF6_HUMAN 69 100 DBREF 1ZMQ C 1 32 UNP Q01524 DEF6_HUMAN 69 100 DBREF 1ZMQ D 1 32 UNP Q01524 DEF6_HUMAN 69 100 SEQRES 1 A 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 A 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 A 32 HIS ARG PHE CYS CYS LEU SEQRES 1 B 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 B 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 B 32 HIS ARG PHE CYS CYS LEU SEQRES 1 C 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 C 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 C 32 HIS ARG PHE CYS CYS LEU SEQRES 1 D 32 ALA PHE THR CYS HIS CYS ARG ARG SER CYS TYR SER THR SEQRES 2 D 32 GLU TYR SER TYR GLY THR CYS THR VAL MET GLY ILE ASN SEQRES 3 D 32 HIS ARG PHE CYS CYS LEU HET CL A 501 1 HET CL A 505 1 HET CL B 506 1 HET CL C 502 1 HET CL C 507 1 HET CL C 508 1 HET CL D 503 1 HET CL D 504 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 8(CL 1-) FORMUL 13 HOH *192(H2 O) SHEET 1 A12 CYS B 4 ARG B 7 0 SHEET 2 A12 ILE B 25 CYS B 31 -1 O ARG B 28 N ARG B 7 SHEET 3 A12 TYR B 15 VAL B 22 -1 N CYS B 20 O HIS B 27 SHEET 4 A12 TYR A 15 VAL A 22 -1 N THR A 21 O THR B 21 SHEET 5 A12 ILE A 25 LEU A 32 -1 O PHE A 29 N TYR A 17 SHEET 6 A12 PHE A 2 ARG A 7 -1 N HIS A 5 O CYS A 30 SHEET 7 A12 PHE C 2 ARG C 7 -1 O CYS C 4 N PHE A 2 SHEET 8 A12 ILE C 25 LEU C 32 -1 O ARG C 28 N ARG C 7 SHEET 9 A12 TYR C 15 VAL C 22 -1 N TYR C 15 O CYS C 31 SHEET 10 A12 TYR D 15 VAL D 22 -1 O THR D 21 N THR C 21 SHEET 11 A12 ILE D 25 LEU D 32 -1 O HIS D 27 N CYS D 20 SHEET 12 A12 THR D 3 ARG D 7 -1 N ARG D 7 O ARG D 28 SSBOND 1 CYS A 4 CYS A 31 1555 1555 2.07 SSBOND 2 CYS A 6 CYS A 20 1555 1555 2.00 SSBOND 3 CYS A 10 CYS A 30 1555 1555 2.07 SSBOND 4 CYS B 4 CYS B 31 1555 1555 2.07 SSBOND 5 CYS B 6 CYS B 20 1555 1555 2.07 SSBOND 6 CYS B 10 CYS B 30 1555 1555 2.03 SSBOND 7 CYS C 4 CYS C 31 1555 1555 2.08 SSBOND 8 CYS C 6 CYS C 20 1555 1555 2.00 SSBOND 9 CYS C 10 CYS C 30 1555 1555 2.07 SSBOND 10 CYS D 4 CYS D 31 1555 1555 2.05 SSBOND 11 CYS D 6 CYS D 20 1555 1555 2.07 SSBOND 12 CYS D 10 CYS D 30 1555 1555 2.07 SITE 1 AC1 5 ALA A 1 HIS C 5 HOH C 281 HIS D 5 SITE 2 AC1 5 HOH D 213 SITE 1 AC2 5 ALA A 1 HIS C 5 CYS C 6 CYS D 6 SITE 2 AC2 5 HOH D 213 SITE 1 AC3 7 HIS A 5 HOH A 242 HIS B 5 HOH B 110 SITE 2 AC3 7 ALA C 1 HOH C 259 ALA D 1 SITE 1 AC4 5 HIS A 5 CYS A 6 CYS B 6 HOH B 110 SITE 2 AC4 5 ALA C 1 SITE 1 AC5 4 ALA A 1 HOH A 256 ARG D 7 HOH D 119 SITE 1 AC6 3 TYR B 11 SER B 12 ASN C 26 SITE 1 AC7 5 TYR B 15 HOH B 103 ARG C 8 HIS C 27 SITE 2 AC7 5 HOH C 218 SITE 1 AC8 3 SER C 9 CYS C 10 ARG C 28 CRYST1 62.068 62.068 145.297 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006882 0.00000