HEADER SIGNALING PROTEIN,TRANSFERASE 11-MAY-05 1ZMU TITLE CATALYTIC AND UBIQUTIN-ASSOCIATED DOMAINS OF MARK2/PAR-1: WILD TYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP/MICROTUBULE AFFINITY REGULATING KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC AND UBIQUITIN-ASSOCIATED DOMAINS; COMPND 5 SYNONYM: PAR-1; KIN1; SERINE/THREONINE KINASE EMK; SERINE/THREONINE- COMPND 6 PROTEIN KINASE MARK2; ELKL MOTIF KINASE; EMK1; COMPND 7 EC: 2.7.1.37; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MARK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS SERINE/THREONINE PROTEIN KINASE; MARK; PAR-1; KIN1; UBA DOMAIN, KEYWDS 2 SIGNALING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PANNEERSELVAM,A.MARX,E.-M.MANDELKOW,E.MANDELKOW REVDAT 3 23-AUG-23 1ZMU 1 REMARK SEQADV REVDAT 2 24-FEB-09 1ZMU 1 VERSN REVDAT 1 14-FEB-06 1ZMU 0 JRNL AUTH S.PANNEERSELVAM,A.MARX,E.M.MANDELKOW,E.MANDELKOW JRNL TITL STRUCTURE OF THE CATALYTIC AND UBIQUITIN-ASSOCIATED DOMAINS JRNL TITL 2 OF THE PROTEIN KINASE MARK/PAR-1. JRNL REF STRUCTURE V. 14 173 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16472737 JRNL DOI 10.1016/J.STR.2005.09.022 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.74000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.687 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.414 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.300 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.694 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4752 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6418 ; 2.002 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 583 ; 7.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;37.159 ;23.961 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 863 ;21.130 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.145 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3513 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2280 ; 0.258 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3262 ; 0.334 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.308 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 53 A 131 3 REMARK 3 1 B 53 B 131 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 296 ; 0.07 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 301 ; 0.42 ; 5.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 135 A 309 3 REMARK 3 1 B 135 B 309 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 608 ; 0.06 ; 0.05 REMARK 3 LOOSE POSITIONAL 2 A (A): 586 ; 0.41 ; 5.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 323 A 363 3 REMARK 3 1 B 323 B 363 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 164 ; 0.08 ; 0.05 REMARK 3 LOOSE POSITIONAL 3 A (A): 177 ; 0.56 ; 5.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8046 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Y8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM SULPHATE, BIS-TRIS, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.17767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.35533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.76650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.94417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.58883 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 38 REMARK 465 ASN A 39 REMARK 465 SER A 40 REMARK 465 ALA A 41 REMARK 465 THR A 42 REMARK 465 SER A 43 REMARK 465 ALA A 44 REMARK 465 ASP A 45 REMARK 465 GLU A 46 REMARK 465 GLN A 47 REMARK 465 PRO A 48 REMARK 465 HIS A 49 REMARK 465 ILE A 50 REMARK 465 ASN A 63 REMARK 465 PHE A 64 REMARK 465 ASP A 193 REMARK 465 PHE A 194 REMARK 465 GLY A 195 REMARK 465 PHE A 196 REMARK 465 SER A 197 REMARK 465 ASN A 198 REMARK 465 GLU A 199 REMARK 465 PHE A 200 REMARK 465 THR A 201 REMARK 465 PHE A 202 REMARK 465 GLY A 203 REMARK 465 ASN A 204 REMARK 465 LYS A 205 REMARK 465 LEU A 206 REMARK 465 ASP A 207 REMARK 465 THR A 208 REMARK 465 PHE A 209 REMARK 465 CYS A 210 REMARK 465 LYS A 364 REMARK 465 GLY B 38 REMARK 465 ASN B 39 REMARK 465 SER B 40 REMARK 465 ALA B 41 REMARK 465 THR B 42 REMARK 465 SER B 43 REMARK 465 ALA B 44 REMARK 465 ASP B 45 REMARK 465 GLU B 46 REMARK 465 GLN B 47 REMARK 465 ASN B 63 REMARK 465 PHE B 64 REMARK 465 ASP B 193 REMARK 465 PHE B 194 REMARK 465 GLY B 195 REMARK 465 PHE B 196 REMARK 465 SER B 197 REMARK 465 ASN B 198 REMARK 465 GLU B 199 REMARK 465 PHE B 200 REMARK 465 THR B 201 REMARK 465 PHE B 202 REMARK 465 GLY B 203 REMARK 465 ASN B 204 REMARK 465 LYS B 205 REMARK 465 LEU B 206 REMARK 465 ASP B 207 REMARK 465 THR B 208 REMARK 465 PHE B 209 REMARK 465 CYS B 210 REMARK 465 LYS B 364 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLN A 95 CG CD OE1 NE2 REMARK 470 PHE A 138 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 144 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 GLU B 260 CG CD OE1 OE2 REMARK 470 ARG B 264 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 314 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 86 O PHE B 271 5554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 100 CB GLU A 100 CG 0.133 REMARK 500 GLU A 100 CG GLU A 100 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 11.62 -48.74 REMARK 500 LEU A 56 -150.84 -112.78 REMARK 500 LYS A 57 129.42 -28.84 REMARK 500 ILE A 59 2.10 -155.50 REMARK 500 ARG A 174 -17.90 55.70 REMARK 500 ASP A 251 -146.20 -120.95 REMARK 500 GLU A 257 -72.65 -72.34 REMARK 500 LEU A 258 -44.14 -28.87 REMARK 500 ASP A 311 38.96 -144.26 REMARK 500 TYR A 351 29.75 47.77 REMARK 500 LEU B 56 -148.37 -119.84 REMARK 500 ARG B 174 -16.80 59.29 REMARK 500 ASP B 175 83.08 -151.16 REMARK 500 ASP B 251 -138.68 -121.39 REMARK 500 HIS B 308 40.51 -142.75 REMARK 500 ASP B 311 60.02 -109.77 REMARK 500 GLU B 312 142.68 -38.47 REMARK 500 ASP B 325 108.42 -57.11 REMARK 500 ASN B 352 -165.52 -102.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 310 ASP A 311 -143.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y8G RELATED DB: PDB REMARK 900 T208A/S212A INACTIVE DOUBLE MUTANT WITH SELENOMETHIONINE REMARK 900 RELATED ID: 1ZMV RELATED DB: PDB REMARK 900 RELATED ID: 1ZMW RELATED DB: PDB DBREF 1ZMU A 39 364 UNP O08679 MARK2_RAT 39 364 DBREF 1ZMU B 39 364 UNP O08679 MARK2_RAT 39 364 SEQADV 1ZMU GLY A 38 UNP O08679 CLONING ARTIFACT SEQADV 1ZMU GLY B 38 UNP O08679 CLONING ARTIFACT SEQRES 1 A 327 GLY ASN SER ALA THR SER ALA ASP GLU GLN PRO HIS ILE SEQRES 2 A 327 GLY ASN TYR ARG LEU LEU LYS THR ILE GLY LYS GLY ASN SEQRES 3 A 327 PHE ALA LYS VAL LYS LEU ALA ARG HIS ILE LEU THR GLY SEQRES 4 A 327 LYS GLU VAL ALA VAL LYS ILE ILE ASP LYS THR GLN LEU SEQRES 5 A 327 ASN SER SER SER LEU GLN LYS LEU PHE ARG GLU VAL ARG SEQRES 6 A 327 ILE MET LYS VAL LEU ASN HIS PRO ASN ILE VAL LYS LEU SEQRES 7 A 327 PHE GLU VAL ILE GLU THR GLU LYS THR LEU TYR LEU VAL SEQRES 8 A 327 MET GLU TYR ALA SER GLY GLY GLU VAL PHE ASP TYR LEU SEQRES 9 A 327 VAL ALA HIS GLY ARG MET LYS GLU LYS GLU ALA ARG ALA SEQRES 10 A 327 LYS PHE ARG GLN ILE VAL SER ALA VAL GLN TYR CYS HIS SEQRES 11 A 327 GLN LYS PHE ILE VAL HIS ARG ASP LEU LYS ALA GLU ASN SEQRES 12 A 327 LEU LEU LEU ASP ALA ASP MET ASN ILE LYS ILE ALA ASP SEQRES 13 A 327 PHE GLY PHE SER ASN GLU PHE THR PHE GLY ASN LYS LEU SEQRES 14 A 327 ASP THR PHE CYS GLY SER PRO PRO TYR ALA ALA PRO GLU SEQRES 15 A 327 LEU PHE GLN GLY LYS LYS TYR ASP GLY PRO GLU VAL ASP SEQRES 16 A 327 VAL TRP SER LEU GLY VAL ILE LEU TYR THR LEU VAL SER SEQRES 17 A 327 GLY SER LEU PRO PHE ASP GLY GLN ASN LEU LYS GLU LEU SEQRES 18 A 327 ARG GLU ARG VAL LEU ARG GLY LYS TYR ARG ILE PRO PHE SEQRES 19 A 327 TYR MET SER THR ASP CYS GLU ASN LEU LEU LYS LYS PHE SEQRES 20 A 327 LEU ILE LEU ASN PRO SER LYS ARG GLY THR LEU GLU GLN SEQRES 21 A 327 ILE MET LYS ASP ARG TRP MET ASN VAL GLY HIS GLU ASP SEQRES 22 A 327 ASP GLU LEU LYS PRO TYR VAL GLU PRO LEU PRO ASP TYR SEQRES 23 A 327 LYS ASP PRO ARG ARG THR GLU LEU MET VAL SER MET GLY SEQRES 24 A 327 TYR THR ARG GLU GLU ILE GLN ASP SER LEU VAL GLY GLN SEQRES 25 A 327 ARG TYR ASN GLU VAL MET ALA THR TYR LEU LEU LEU GLY SEQRES 26 A 327 TYR LYS SEQRES 1 B 327 GLY ASN SER ALA THR SER ALA ASP GLU GLN PRO HIS ILE SEQRES 2 B 327 GLY ASN TYR ARG LEU LEU LYS THR ILE GLY LYS GLY ASN SEQRES 3 B 327 PHE ALA LYS VAL LYS LEU ALA ARG HIS ILE LEU THR GLY SEQRES 4 B 327 LYS GLU VAL ALA VAL LYS ILE ILE ASP LYS THR GLN LEU SEQRES 5 B 327 ASN SER SER SER LEU GLN LYS LEU PHE ARG GLU VAL ARG SEQRES 6 B 327 ILE MET LYS VAL LEU ASN HIS PRO ASN ILE VAL LYS LEU SEQRES 7 B 327 PHE GLU VAL ILE GLU THR GLU LYS THR LEU TYR LEU VAL SEQRES 8 B 327 MET GLU TYR ALA SER GLY GLY GLU VAL PHE ASP TYR LEU SEQRES 9 B 327 VAL ALA HIS GLY ARG MET LYS GLU LYS GLU ALA ARG ALA SEQRES 10 B 327 LYS PHE ARG GLN ILE VAL SER ALA VAL GLN TYR CYS HIS SEQRES 11 B 327 GLN LYS PHE ILE VAL HIS ARG ASP LEU LYS ALA GLU ASN SEQRES 12 B 327 LEU LEU LEU ASP ALA ASP MET ASN ILE LYS ILE ALA ASP SEQRES 13 B 327 PHE GLY PHE SER ASN GLU PHE THR PHE GLY ASN LYS LEU SEQRES 14 B 327 ASP THR PHE CYS GLY SER PRO PRO TYR ALA ALA PRO GLU SEQRES 15 B 327 LEU PHE GLN GLY LYS LYS TYR ASP GLY PRO GLU VAL ASP SEQRES 16 B 327 VAL TRP SER LEU GLY VAL ILE LEU TYR THR LEU VAL SER SEQRES 17 B 327 GLY SER LEU PRO PHE ASP GLY GLN ASN LEU LYS GLU LEU SEQRES 18 B 327 ARG GLU ARG VAL LEU ARG GLY LYS TYR ARG ILE PRO PHE SEQRES 19 B 327 TYR MET SER THR ASP CYS GLU ASN LEU LEU LYS LYS PHE SEQRES 20 B 327 LEU ILE LEU ASN PRO SER LYS ARG GLY THR LEU GLU GLN SEQRES 21 B 327 ILE MET LYS ASP ARG TRP MET ASN VAL GLY HIS GLU ASP SEQRES 22 B 327 ASP GLU LEU LYS PRO TYR VAL GLU PRO LEU PRO ASP TYR SEQRES 23 B 327 LYS ASP PRO ARG ARG THR GLU LEU MET VAL SER MET GLY SEQRES 24 B 327 TYR THR ARG GLU GLU ILE GLN ASP SER LEU VAL GLY GLN SEQRES 25 B 327 ARG TYR ASN GLU VAL MET ALA THR TYR LEU LEU LEU GLY SEQRES 26 B 327 TYR LYS HELIX 1 1 THR A 87 LEU A 89 5 3 HELIX 2 2 ASN A 90 LEU A 107 1 18 HELIX 3 3 VAL A 137 GLY A 145 1 9 HELIX 4 4 LYS A 148 LYS A 169 1 22 HELIX 5 5 SER A 212 ALA A 216 5 5 HELIX 6 6 ALA A 217 GLY A 223 5 7 HELIX 7 7 PRO A 229 GLY A 246 1 18 HELIX 8 8 ASN A 254 GLY A 265 1 12 HELIX 9 9 SER A 274 LEU A 285 1 12 HELIX 10 10 ASN A 288 ARG A 292 5 5 HELIX 11 11 THR A 294 MET A 299 1 6 HELIX 12 12 ASP A 301 VAL A 306 1 6 HELIX 13 13 ASP A 325 MET A 335 1 11 HELIX 14 14 THR A 338 GLY A 348 1 11 HELIX 15 15 ASN A 352 LEU A 361 1 10 HELIX 16 16 THR B 87 LEU B 89 5 3 HELIX 17 17 ASN B 90 LEU B 107 1 18 HELIX 18 18 GLU B 136 GLY B 145 1 10 HELIX 19 19 LYS B 148 LYS B 169 1 22 HELIX 20 20 SER B 212 ALA B 216 5 5 HELIX 21 21 ALA B 217 GLY B 223 5 7 HELIX 22 22 PRO B 229 GLY B 246 1 18 HELIX 23 23 ASN B 254 GLY B 265 1 12 HELIX 24 24 SER B 274 LEU B 285 1 12 HELIX 25 25 ASN B 288 ARG B 292 5 5 HELIX 26 26 THR B 294 MET B 299 1 6 HELIX 27 27 ASP B 301 VAL B 306 1 6 HELIX 28 28 ASP B 325 GLY B 336 1 12 HELIX 29 29 THR B 338 GLY B 348 1 11 HELIX 30 30 ASN B 352 LEU B 361 1 10 SHEET 1 A 5 TYR A 53 GLY A 60 0 SHEET 2 A 5 LYS A 66 HIS A 72 -1 O LEU A 69 N LYS A 57 SHEET 3 A 5 GLU A 78 ASP A 85 -1 O VAL A 81 N LYS A 68 SHEET 4 A 5 THR A 124 MET A 129 -1 O MET A 129 N ALA A 80 SHEET 5 A 5 LEU A 115 GLU A 120 -1 N PHE A 116 O VAL A 128 SHEET 1 B 3 GLY A 135 GLU A 136 0 SHEET 2 B 3 LEU A 181 LEU A 183 -1 O LEU A 183 N GLY A 135 SHEET 3 B 3 ILE A 189 ILE A 191 -1 O LYS A 190 N LEU A 182 SHEET 1 C 5 TYR B 53 GLY B 60 0 SHEET 2 C 5 LYS B 66 HIS B 72 -1 O VAL B 67 N ILE B 59 SHEET 3 C 5 GLU B 78 ASP B 85 -1 O VAL B 81 N LYS B 68 SHEET 4 C 5 THR B 124 MET B 129 -1 O MET B 129 N ALA B 80 SHEET 5 C 5 LEU B 115 GLU B 120 -1 N PHE B 116 O VAL B 128 SHEET 1 D 2 LEU B 181 LEU B 183 0 SHEET 2 D 2 ILE B 189 ILE B 191 -1 O LYS B 190 N LEU B 182 CRYST1 120.269 120.269 99.533 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008315 0.004800 0.000000 0.00000 SCALE2 0.000000 0.009601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010047 0.00000