HEADER TRANSLATION/BIOSYNTHETIC PROTEIN/RNA 11-MAY-05 1ZN0 TITLE COORDINATES OF RRF AND EF-G FITTED INTO CRYO-EM MAP OF THE 50S SUBUNIT TITLE 2 BOUND WITH BOTH EF-G (GDPNP) AND RRF COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16S RIBOSOMAL RNA; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: FRAGMENT OF HELIX 44; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RIBOSOME RECYCLING FACTOR; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: RIBOSOME RELEASING FACTOR, RRF; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ELONGATION FACTOR G; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: EF-G SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 6 ORGANISM_TAXID: 562; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562 KEYWDS RIBOSOME RECYCLING FACTOR, ELONGATION FACTOR G, 50S SUBUNIT, KEYWDS 2 TRANSLATION-BIOSYNTHETIC PROTEIN-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN A, B; P ATOMS ONLY, CHAIN C AUTHOR N.GAO,A.V.ZAVIALOV,W.LI,J.SENGUPTA,M.VALLE,R.P.GURSKY,M.EHRENBERG, AUTHOR 2 J.FRANK REVDAT 4 14-FEB-24 1ZN0 1 REMARK REVDAT 3 02-FEB-10 1ZN0 1 REMARK REVDAT 2 24-FEB-09 1ZN0 1 VERSN REVDAT 1 14-JUN-05 1ZN0 0 JRNL AUTH N.GAO,A.V.ZAVIALOV,W.LI,J.SENGUPTA,M.VALLE,R.P.GURSKY, JRNL AUTH 2 M.EHRENBERG,J.FRANK JRNL TITL MECHANISM FOR THE DISASSEMBLY OF THE POSTTERMINATION COMPLEX JRNL TITL 2 INFERRED FROM CRYO-EM STUDIES. JRNL REF MOL.CELL V. 18 663 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 15949441 JRNL DOI 10.1016/J.MOLCEL.2005.05.005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.VALLE,A.ZAVIALOV,J.SENGUPTA,U.RAWAT,M.EHRENBERG,J.FRANK REMARK 1 TITL LOCKING AND UNLOCKING OF RIBOSOMAL MOTIONS REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 114 123 2003 REMARK 1 REFN ISSN 0092-8674 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.K.KIM,K.MIN,S.W.SUH REMARK 1 TITL CRYSTAL STRUCTURE OF THE RIBOSOME RECYCLING FACTOR FROM REMARK 1 TITL 2 E.COLI REMARK 1 REF EMBO J. V. 19 2362 2000 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 15.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1PN6 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--MANUAL FITTING IN O REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 15.50 REMARK 3 NUMBER OF PARTICLES : 32171 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV REMARK 3 REMARK 3 OTHER DETAILS: SPIDER PACKAGE REMARK 4 REMARK 4 1ZN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032911. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : 50S RIBOSOMAL SUBUNIT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.03 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL HOLEY CARBON FILM REMARK 245 GRIDS REMARK 245 SAMPLE VITRIFICATION DETAILS : RAPID-FREEZING IN LIQUID ETHANE REMARK 245 SAMPLE BUFFER : POLYMIX BUFFER REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-FEB-03 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 93.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : -1.50 REMARK 245 MAXIMUM DEFOCUS (NM) : -4.80 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 49700 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PN6 RELATED DB: PDB REMARK 900 STRUCTURE OF EF-G REMARK 900 RELATED ID: 1EK8 RELATED DB: PDB REMARK 900 STRUCTURE OF E.COLI RRF REMARK 900 RELATED ID: 1P6G RELATED DB: PDB REMARK 900 SMALL SUBUNIT 30S REMARK 900 RELATED ID: EMD-1127 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-1128 RELATED DB: EMDB REMARK 999 REMARK 999 SEQUENCE THIS ENTRY CONTAINS C ALPHA AND P ATOMS ONLY THE REMARK 999 SEQUENCE OF THIS PROTEIN MATCHES TO THERMUS THERMOPHILUS OF PDB REMARK 999 ENTRY 1PN6 DBREF 1ZN0 A 1 185 UNP P0A805 RRF_ECOLI 1 185 DBREF 1ZN0 C 1405 1495 PDB 1ZN0 1ZN0 1405 1495 DBREF 1ZN0 B 6 688 PDB 1ZN0 1ZN0 6 688 SEQRES 1 C 40 G U C A C A C C A U G G G SEQRES 2 C 40 A G U G G G U A U U C A U SEQRES 3 C 40 G A C U G G G G U G A A G SEQRES 4 C 40 U SEQRES 1 A 185 MET ILE SER ASP ILE ARG LYS ASP ALA GLU VAL ARG MET SEQRES 2 A 185 ASP LYS CYS VAL GLU ALA PHE LYS THR GLN ILE SER LYS SEQRES 3 A 185 ILE ARG THR GLY ARG ALA SER PRO SER LEU LEU ASP GLY SEQRES 4 A 185 ILE VAL VAL GLU TYR TYR GLY THR PRO THR PRO LEU ARG SEQRES 5 A 185 GLN LEU ALA SER VAL THR VAL GLU ASP SER ARG THR LEU SEQRES 6 A 185 LYS ILE ASN VAL PHE ASP ARG SER MET SER PRO ALA VAL SEQRES 7 A 185 GLU LYS ALA ILE MET ALA SER ASP LEU GLY LEU ASN PRO SEQRES 8 A 185 ASN SER ALA GLY SER ASP ILE ARG VAL PRO LEU PRO PRO SEQRES 9 A 185 LEU THR GLU GLU ARG ARG LYS ASP LEU THR LYS ILE VAL SEQRES 10 A 185 ARG GLY GLU ALA GLU GLN ALA ARG VAL ALA VAL ARG ASN SEQRES 11 A 185 VAL ARG ARG ASP ALA ASN ASP LYS VAL LYS ALA LEU LEU SEQRES 12 A 185 LYS ASP LYS GLU ILE SER GLU ASP ASP ASP ARG ARG SER SEQRES 13 A 185 GLN ASP ASP VAL GLN LYS LEU THR ASP ALA ALA ILE LYS SEQRES 14 A 185 LYS ILE GLU ALA ALA LEU ALA ASP LYS GLU ALA GLU LEU SEQRES 15 A 185 MET GLN PHE SEQRES 1 B 655 GLU TYR ASP LEU LYS ARG LEU ARG ASN ILE GLY ILE ALA SEQRES 2 B 655 ALA HIS ILE ASP ALA GLY LYS THR THR THR THR GLU ARG SEQRES 3 B 655 ILE LEU TYR TYR THR GLY ARG ILE ALA VAL THR THR CYS SEQRES 4 B 655 PHE TRP LYS ASP HIS ARG ILE ASN ILE ILE ASP THR PRO SEQRES 5 B 655 GLY HIS VAL ASP PHE THR ILE GLU VAL GLU ARG SER MET SEQRES 6 B 655 ARG VAL LEU ASP GLY ALA ILE VAL VAL PHE ASP SER SER SEQRES 7 B 655 GLN GLY VAL GLU PRO GLN SER GLU THR VAL TRP ARG GLN SEQRES 8 B 655 ALA GLU LYS TYR LYS VAL PRO ARG ILE ALA PHE ALA ASN SEQRES 9 B 655 LYS MET ASP LYS THR GLY ALA ASP LEU TRP LEU VAL ILE SEQRES 10 B 655 ARG THR MET GLN GLU ARG LEU GLY ALA ARG PRO VAL VAL SEQRES 11 B 655 MET GLN LEU PRO ILE GLY ARG GLU ASP THR PHE SER GLY SEQRES 12 B 655 ILE ILE ASP VAL LEU ARG MET LYS ALA TYR THR TYR GLY SEQRES 13 B 655 ASN ASP LEU GLY THR ASP ILE ARG GLU ILE PRO ILE PRO SEQRES 14 B 655 GLU GLU TYR LEU ASP GLN ALA ARG GLU TYR HIS GLU LYS SEQRES 15 B 655 LEU VAL GLU VAL ALA ALA ASP PHE ASP GLU ASN ILE MET SEQRES 16 B 655 LEU LYS TYR LEU GLU GLY GLU GLU PRO THR GLU GLU GLU SEQRES 17 B 655 LEU VAL ALA ALA ILE ARG LYS GLY THR ILE ASP LEU LYS SEQRES 18 B 655 ILE THR PRO VAL PHE LEU GLY SER ALA LEU LYS ASN LYS SEQRES 19 B 655 GLY VAL GLN LEU LEU LEU ASP ALA VAL VAL ASP TYR LEU SEQRES 20 B 655 PRO SER PRO LEU ASP ILE PRO PRO ILE LYS GLY THR THR SEQRES 21 B 655 PRO GLU GLY GLU VAL VAL GLU ILE HIS PRO ASP PRO ASN SEQRES 22 B 655 GLY PRO LEU ALA ALA LEU ALA PHE LYS ILE MET ALA ASP SEQRES 23 B 655 PRO TYR VAL GLY ARG LEU THR PHE ILE ARG VAL TYR SER SEQRES 24 B 655 GLY THR LEU THR SER GLY SER TYR VAL TYR ASN THR THR SEQRES 25 B 655 LYS GLY ARG LYS GLU ARG VAL ALA ARG LEU LEU ARG MET SEQRES 26 B 655 HIS ALA ASN HIS ARG GLU GLU VAL GLU GLU LEU LYS ALA SEQRES 27 B 655 GLY ASP LEU GLY ALA VAL VAL GLY LEU LYS GLU THR ILE SEQRES 28 B 655 THR GLY ASP THR LEU VAL GLY GLU ASP ALA PRO ARG VAL SEQRES 29 B 655 ILE LEU GLU SER ILE GLU VAL PRO GLU PRO VAL ILE ASP SEQRES 30 B 655 VAL ALA ILE GLU PRO LYS THR LYS ALA ASP GLN GLU LYS SEQRES 31 B 655 LEU SER GLN ALA LEU ALA ARG LEU ALA GLU GLU ASP PRO SEQRES 32 B 655 THR PHE ARG VAL SER THR HIS PRO GLU THR GLY GLN THR SEQRES 33 B 655 ILE ILE SER GLY MET GLY GLU LEU HIS LEU GLU ILE ILE SEQRES 34 B 655 VAL ASP ARG LEU LYS ARG GLU PHE LYS VAL ASP ALA ASN SEQRES 35 B 655 VAL GLY LYS PRO GLN VAL ALA TYR ARG GLU THR ILE THR SEQRES 36 B 655 LYS PRO VAL ASP VAL GLU GLY LYS PHE ILE ARG GLN THR SEQRES 37 B 655 GLY GLY ARG GLY GLN TYR GLY HIS VAL LYS ILE LYS VAL SEQRES 38 B 655 GLU PRO LEU PRO ARG GLY SER GLY PHE GLU PHE VAL ASN SEQRES 39 B 655 ALA ILE VAL GLY GLY VAL ILE PRO LYS GLU TYR ILE PRO SEQRES 40 B 655 ALA VAL GLN LYS GLY ILE GLU GLU ALA MET GLN SER GLY SEQRES 41 B 655 PRO LEU ILE GLY PHE PRO VAL VAL ASP ILE LYS VAL THR SEQRES 42 B 655 LEU TYR ASP GLY SER TYR ALA GLU VAL ASP SER SER GLU SEQRES 43 B 655 MET ALA PHE LYS ILE ALA GLY SER MET ALA ILE LYS GLU SEQRES 44 B 655 ALA VAL GLN LYS GLY ASP PRO VAL ILE LEU GLU PRO ILE SEQRES 45 B 655 MET ARG VAL GLU VAL THR THR PRO GLU GLU TYR MET GLY SEQRES 46 B 655 ASP VAL ILE GLY ASP LEU ASN ALA ARG ARG GLY GLN ILE SEQRES 47 B 655 LEU GLY MET GLU PRO ARG GLY ASN ALA GLN VAL ILE ARG SEQRES 48 B 655 ALA PHE VAL PRO LEU ALA GLU MET PHE GLY TYR ALA THR SEQRES 49 B 655 ASP LEU ARG SER LYS THR GLN GLY ARG GLY SER PHE VAL SEQRES 50 B 655 MET PHE PHE ASP HIS TYR GLN GLU VAL PRO LYS GLN VAL SEQRES 51 B 655 GLN GLU LYS LEU ILE CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000