HEADER BIOSYNTHETIC/STRUCTURAL PROTEIN/RNA 11-MAY-05 1ZN1 TITLE COORDINATES OF RRF FITTED INTO CRYO-EM MAP OF THE 70S POST-TERMINATION TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL 23S RNA; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: FRAGMENT OF LARGE SUBUNIT RRNA HELIX 69-71; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RIBOSOMAL 16S RNA; COMPND 7 CHAIN: C; COMPND 8 FRAGMENT: FRAGMENT OF SMALL SUBUNIT RRNA HELIX 44; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RIBOSOME RECYCLING FACTOR; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: RIBOSOME RELEASING FACTOR, RRF; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: 30S RIBOSOMAL PROTEIN S12; COMPND 15 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 6 ORGANISM_TAXID: 562; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562 KEYWDS RIBOSOME RECYCLING FACTOR, ELONGATION FACTOR G, 70S, POST-TERMINATION KEYWDS 2 COMPLEX, BIOSYNTHETIC-STRUCTURAL PROTEIN-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN A, L; P ATOMS ONLY, CHAIN B, C AUTHOR N.GAO,A.V.ZAVIALOV,W.LI,J.SENGUPTA,M.VALLE,R.P.GURSKY,M.EHRENBERG, AUTHOR 2 J.FRANK REVDAT 5 14-FEB-24 1ZN1 1 REMARK REVDAT 4 31-JAN-18 1ZN1 1 JRNL REMARK REVDAT 3 02-FEB-10 1ZN1 1 REMARK REVDAT 2 24-FEB-09 1ZN1 1 VERSN REVDAT 1 14-JUN-05 1ZN1 0 JRNL AUTH N.GAO,A.V.ZAVIALOV,W.LI,J.SENGUPTA,M.VALLE,R.P.GURSKY, JRNL AUTH 2 M.EHRENBERG,J.FRANK JRNL TITL MECHANISM FOR THE DISASSEMBLY OF THE POSTTERMINATION COMPLEX JRNL TITL 2 INFERRED FROM CRYO-EM STUDIES. JRNL REF MOL.CELL V. 18 663 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 15949441 JRNL DOI 10.1016/J.MOLCEL.2005.05.005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.VALLE,A.ZAVIALOV,J.SENGUPTA,U.RAWAT,M.EHRENBERG,J.FRANK REMARK 1 TITL LOCKING AND UNLOCKING OF RIBOSOMAL MOTIONS REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 114 123 2003 REMARK 1 REFN ISSN 0092-8674 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.GAO,J.SENGUPTA,M.VALLE,A.KOROSTELEV,N.ESWAR,S.M.STAGG, REMARK 1 AUTH 2 P.VAN ROEY,R.K.AGRAWAL,S.C.HARVEY,A.SALI,M.S.CHAPMAN,J.FRANK REMARK 1 TITL STUDY OF STRUCTURAL DYNAMICS OF E.COLI 70S RIBOSOME USING REMARK 1 TITL 2 REAL-SPACE REFINEMENT REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 113 789 2003 REMARK 1 REFN ISSN 0092-8674 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.K.KIM,K.MIN,S.W.SUH REMARK 1 TITL CRYSTAL STRUCTURE OF THE RIBOSOME RECYCLING FACTOR FROM REMARK 1 TITL 2 E.COLI REMARK 1 REF EMBO J. V. 19 2362 2000 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 14.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1P6G REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--MANUAL FITTING IN O REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 14.10 REMARK 3 NUMBER OF PARTICLES : 37379 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV REMARK 3 REMARK 3 OTHER DETAILS: SPIDER PACKAGE REMARK 4 REMARK 4 1ZN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032912. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : 70S RIBOSOME REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.03 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL HOLEY CARBON FILM REMARK 245 GRIDS REMARK 245 SAMPLE VITRIFICATION DETAILS : RAPID-FREEZING IN LIQUID ETHANE REMARK 245 SAMPLE BUFFER : POLYMIX BUFFER REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-FEB-03 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 93.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : -1.40 REMARK 245 MAXIMUM DEFOCUS (NM) : -3.80 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 49700 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P6G RELATED DB: PDB REMARK 900 30S SUBUNIT REMARK 900 RELATED ID: 1P85 RELATED DB: PDB REMARK 900 50S SUBUNIT REMARK 900 RELATED ID: 1EK8 RELATED DB: PDB REMARK 900 RRF STRUCTURE FROM E.COLI REMARK 900 RELATED ID: 1ZN0 RELATED DB: PDB REMARK 900 RELATED ID: EMD-1127 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-1128 RELATED DB: EMDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS ENTRY CONTAINS C ALPHA AND P ATOMS ONLY. DBREF 1ZN1 A 1 185 UNP P0A805 RRF_ECOLI 1 185 DBREF 1ZN1 L 27 123 UNP P0A7S3 RS12_ECOLI 27 123 DBREF 1ZN1 B 1906 1964 PDB 1ZN1 1ZN1 1906 1964 DBREF 1ZN1 C 1405 1495 PDB 1ZN1 1ZN1 1405 1495 SEQRES 1 B 59 G G C C G U A A C U A U A SEQRES 2 B 59 A C G G U C C U A A G G U SEQRES 3 B 59 A G C G A A A U U C C U U SEQRES 4 B 59 G U C G G G U A A G U U C SEQRES 5 B 59 C G A C C U G SEQRES 1 C 40 G U C A C A C C A U G G G SEQRES 2 C 40 A G U G G G U A U U C A U SEQRES 3 C 40 G A C U G G G G U G A A G SEQRES 4 C 40 U SEQRES 1 A 185 MET ILE SER ASP ILE ARG LYS ASP ALA GLU VAL ARG MET SEQRES 2 A 185 ASP LYS CYS VAL GLU ALA PHE LYS THR GLN ILE SER LYS SEQRES 3 A 185 ILE ARG THR GLY ARG ALA SER PRO SER LEU LEU ASP GLY SEQRES 4 A 185 ILE VAL VAL GLU TYR TYR GLY THR PRO THR PRO LEU ARG SEQRES 5 A 185 GLN LEU ALA SER VAL THR VAL GLU ASP SER ARG THR LEU SEQRES 6 A 185 LYS ILE ASN VAL PHE ASP ARG SER MET SER PRO ALA VAL SEQRES 7 A 185 GLU LYS ALA ILE MET ALA SER ASP LEU GLY LEU ASN PRO SEQRES 8 A 185 ASN SER ALA GLY SER ASP ILE ARG VAL PRO LEU PRO PRO SEQRES 9 A 185 LEU THR GLU GLU ARG ARG LYS ASP LEU THR LYS ILE VAL SEQRES 10 A 185 ARG GLY GLU ALA GLU GLN ALA ARG VAL ALA VAL ARG ASN SEQRES 11 A 185 VAL ARG ARG ASP ALA ASN ASP LYS VAL LYS ALA LEU LEU SEQRES 12 A 185 LYS ASP LYS GLU ILE SER GLU ASP ASP ASP ARG ARG SER SEQRES 13 A 185 GLN ASP ASP VAL GLN LYS LEU THR ASP ALA ALA ILE LYS SEQRES 14 A 185 LYS ILE GLU ALA ALA LEU ALA ASP LYS GLU ALA GLU LEU SEQRES 15 A 185 MET GLN PHE SEQRES 1 L 97 PRO GLN LYS ARG GLY VAL CYS THR ARG VAL TYR THR THR SEQRES 2 L 97 THR PRO LYS LYS PRO ASN SER ALA LEU ARG LYS VAL CYS SEQRES 3 L 97 ARG VAL ARG LEU THR ASN GLY PHE GLU VAL THR SER TYR SEQRES 4 L 97 ILE GLY GLY GLU GLY HIS ASN LEU GLN GLU HIS SER VAL SEQRES 5 L 97 ILE LEU ILE ARG GLY GLY ARG VAL LYS ASP LEU PRO GLY SEQRES 6 L 97 VAL ARG TYR HIS THR VAL ARG GLY ALA LEU ASP CYS SER SEQRES 7 L 97 GLY VAL LYS ASP ARG LYS GLN ALA ARG SER LYS TYR GLY SEQRES 8 L 97 VAL LYS ARG PRO LYS ALA CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000