HEADER TRANSFERASE 12-MAY-05 1ZNZ TITLE CRYSTAL STRUCTURE OF THE REDUCED FORM OF MYCOBACTERIUM TUBERCULOSIS TITLE 2 GUANYLATE KINASE IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GMP KINASE; COMPND 5 EC: 2.7.4.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GMK (RV1389); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS GUANYLATE KINASE, GMP KINASE, ATP:GMP-PHOSPHOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.HIBLE,P.CHRISTOVA,L.RENAULT,E.SECLAMAN,A.THOMPSON,E.GIRARD, AUTHOR 2 H.MUNIER-LEHMANN,J.CHERFILS REVDAT 5 25-OCT-23 1ZNZ 1 REMARK REVDAT 4 13-JUL-11 1ZNZ 1 VERSN REVDAT 3 24-FEB-09 1ZNZ 1 VERSN REVDAT 2 17-JAN-06 1ZNZ 1 JRNL REVDAT 1 29-NOV-05 1ZNZ 0 JRNL AUTH G.HIBLE,P.CHRISTOVA,L.RENAULT,E.SECLAMAN,A.THOMPSON, JRNL AUTH 2 E.GIRARD,H.MUNIER-LEHMANN,J.CHERFILS JRNL TITL UNIQUE GMP-BINDING SITE IN MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 GUANOSINE MONOPHOSPHATE KINASE JRNL REF PROTEINS V. 62 489 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16288457 JRNL DOI 10.1002/PROT.20662 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 410 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.396 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.545 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1442 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1371 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1968 ; 1.641 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3157 ; 0.839 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 182 ; 6.552 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 233 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1590 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 287 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 277 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1521 ; 0.237 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 907 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 47 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.114 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.061 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 909 ; 0.560 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1467 ; 0.985 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 533 ; 1.748 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 501 ; 2.919 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 51 REMARK 3 RESIDUE RANGE : A 103 A 144 REMARK 3 RESIDUE RANGE : A 176 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0452 1.7503 42.6693 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0909 REMARK 3 T33: 0.1019 T12: -0.0384 REMARK 3 T13: 0.0184 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.2975 L22: 3.8711 REMARK 3 L33: 3.0085 L12: -1.4856 REMARK 3 L13: -0.5177 L23: 1.0132 REMARK 3 S TENSOR REMARK 3 S11: -0.1116 S12: 0.0785 S13: -0.0447 REMARK 3 S21: 0.0651 S22: 0.0443 S23: 0.0896 REMARK 3 S31: -0.0891 S32: -0.1693 S33: 0.0673 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 102 REMARK 3 RESIDUE RANGE : A 300 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1543 1.7916 25.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1753 REMARK 3 T33: 0.1015 T12: 0.0086 REMARK 3 T13: 0.0151 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 9.6371 L22: 2.8419 REMARK 3 L33: 2.9177 L12: 1.0742 REMARK 3 L13: 0.3429 L23: -3.8486 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: 0.3034 S13: 0.0322 REMARK 3 S21: -0.1665 S22: -0.1938 S23: -0.1625 REMARK 3 S31: 0.0531 S32: 0.2120 S33: 0.2480 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9383 24.9497 40.6270 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.1004 REMARK 3 T33: 0.1045 T12: 0.0861 REMARK 3 T13: 0.0013 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 4.2399 L22: 5.3031 REMARK 3 L33: 4.5609 L12: 1.8542 REMARK 3 L13: 1.7523 L23: 2.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.2123 S13: 0.1160 REMARK 3 S21: -0.3659 S22: -0.0371 S23: -0.2976 REMARK 3 S31: -0.0904 S32: 0.3088 S33: -0.0438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZNZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 27.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.14200 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 (MOLREP) REMARK 200 STARTING MODEL: 1ZNW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) XYLITOL, 3.5M SODIUM REMARK 280 CHLORIDE, 0.1M SODIUM HEPES, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 56.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 56.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 56.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 56.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 56.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 56.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 56.00000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 56.00000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 56.00000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 56.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 56.00000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 56.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 56.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 56.00000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 56.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 56.00000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 56.00000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 56.00000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 56.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 56.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 56.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 56.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 56.00000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 56.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS MONOMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 308 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 THR A 9 REMARK 465 LYS A 10 REMARK 465 PRO A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 GLN A 16 REMARK 465 PRO A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 THR A 203 REMARK 465 ALA A 204 REMARK 465 PRO A 205 REMARK 465 GLY A 206 REMARK 465 SER A 207 REMARK 465 PRO A 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 65 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 147 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 67 -67.72 -109.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZNW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE M.TUBERCULOSIS PROTEIN WITH NO LIGAND REMARK 900 RELATED ID: 1ZNX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE M.TUBERCULOSIS PROTEIN LIGANDED WITH GMP REMARK 900 RELATED ID: 1ZNY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE M.TUBERCULOSIS PROTEIN LIGANDED WITH GDP DBREF 1ZNZ A 2 208 UNP P0A5I4 KGUA_MYCTU 2 208 SEQRES 1 A 207 SER VAL GLY GLU GLY PRO ASP THR LYS PRO THR ALA ARG SEQRES 2 A 207 GLY GLN PRO ALA ALA VAL GLY ARG VAL VAL VAL LEU SER SEQRES 3 A 207 GLY PRO SER ALA VAL GLY LYS SER THR VAL VAL ARG CYS SEQRES 4 A 207 LEU ARG GLU ARG ILE PRO ASN LEU HIS PHE SER VAL SER SEQRES 5 A 207 ALA THR THR ARG ALA PRO ARG PRO GLY GLU VAL ASP GLY SEQRES 6 A 207 VAL ASP TYR HIS PHE ILE ASP PRO THR ARG PHE GLN GLN SEQRES 7 A 207 LEU ILE ASP GLN GLY GLU LEU LEU GLU TRP ALA GLU ILE SEQRES 8 A 207 HIS GLY GLY LEU HIS ARG SER GLY THR LEU ALA GLN PRO SEQRES 9 A 207 VAL ARG ALA ALA ALA ALA THR GLY VAL PRO VAL LEU ILE SEQRES 10 A 207 GLU VAL ASP LEU ALA GLY ALA ARG ALA ILE LYS LYS THR SEQRES 11 A 207 MET PRO GLU ALA VAL THR VAL PHE LEU ALA PRO PRO SER SEQRES 12 A 207 TRP GLN ASP LEU GLN ALA ARG LEU ILE GLY ARG GLY THR SEQRES 13 A 207 GLU THR ALA ASP VAL ILE GLN ARG ARG LEU ASP THR ALA SEQRES 14 A 207 ARG ILE GLU LEU ALA ALA GLN GLY ASP PHE ASP LYS VAL SEQRES 15 A 207 VAL VAL ASN ARG ARG LEU GLU SER ALA CYS ALA GLU LEU SEQRES 16 A 207 VAL SER LEU LEU VAL GLY THR ALA PRO GLY SER PRO HET GDP A 300 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 HOH *48(H2 O) HELIX 1 1 LYS A 34 ILE A 45 1 12 HELIX 2 2 ASP A 73 GLY A 84 1 12 HELIX 3 3 ALA A 103 GLY A 113 1 11 HELIX 4 4 ASP A 121 MET A 132 1 12 HELIX 5 5 SER A 144 GLY A 154 1 11 HELIX 6 6 THR A 159 ALA A 175 1 17 HELIX 7 7 ALA A 176 PHE A 180 5 5 HELIX 8 8 ARG A 188 GLY A 202 1 15 SHEET 1 A 5 HIS A 49 PHE A 50 0 SHEET 2 A 5 VAL A 116 GLU A 119 1 O LEU A 117 N HIS A 49 SHEET 3 A 5 VAL A 23 SER A 27 1 N LEU A 26 O ILE A 118 SHEET 4 A 5 VAL A 136 ALA A 141 1 O VAL A 138 N VAL A 25 SHEET 5 A 5 LYS A 182 VAL A 185 1 O LYS A 182 N PHE A 139 SHEET 1 B 4 HIS A 70 PHE A 71 0 SHEET 2 B 4 ALA A 54 THR A 55 1 N THR A 55 O HIS A 70 SHEET 3 B 4 HIS A 97 LEU A 102 -1 O GLY A 100 N ALA A 54 SHEET 4 B 4 LEU A 86 ILE A 92 -1 N ILE A 92 O HIS A 97 SITE 1 AC1 11 SER A 53 ARG A 57 ARG A 60 TYR A 69 SITE 2 AC1 11 GLU A 88 ALA A 90 SER A 99 GLY A 100 SITE 3 AC1 11 HOH A 314 HOH A 329 HOH A 336 CRYST1 112.000 112.000 112.000 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008929 0.00000