HEADER OXIDOREDUCTASE 13-MAY-05 1ZOR TITLE ISOCITRATE DEHYDROGENASE FROM THE HYPERTHERMOPHILE THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.42; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM1148; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS WILD TYPE ENZYME, CIS-PROLINE, THERMOSTABLE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KARLSTROM,I.H.STEEN,N.-K.BIRKELAND,R.LADENSTEIN REVDAT 5 23-AUG-23 1ZOR 1 REMARK LINK REVDAT 4 07-MAR-18 1ZOR 1 REMARK REVDAT 3 13-JUL-11 1ZOR 1 VERSN REVDAT 2 24-FEB-09 1ZOR 1 VERSN REVDAT 1 16-MAY-06 1ZOR 0 JRNL AUTH M.KARLSTROM,I.H.STEEN,D.MADERN,A.E.FEDOY,N.K.BIRKELAND, JRNL AUTH 2 R.LADENSTEIN JRNL TITL THE CRYSTAL STRUCTURE OF A HYPERTHERMOSTABLE SUBFAMILY II JRNL TITL 2 ISOCITRATE DEHYDROGENASE FROM THERMOTOGA MARITIMA. JRNL REF FEBS J. V. 273 2851 2006 JRNL REFN ISSN 1742-464X JRNL PMID 16759231 JRNL DOI 10.1111/J.1742-4658.2006.05298.X REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 46511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3283 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 428 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.41000 REMARK 3 B22 (A**2) : -3.05000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.036 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6677 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9027 ; 1.251 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 830 ; 6.496 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;34.321 ;24.441 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1279 ;16.376 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;21.497 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 992 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4973 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3235 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4568 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 503 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.153 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4067 ; 0.454 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6612 ; 0.870 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2705 ; 1.646 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2415 ; 2.658 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 129 A 140 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 376 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 456 ; 0.25 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 376 ; 0.12 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 456 ; 0.70 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 129 B 140 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 174 A 229 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 B 174 B 229 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 245 A 285 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 B 245 B 285 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 120 REMARK 3 RESIDUE RANGE : A 286 A 399 REMARK 3 ORIGIN FOR THE GROUP (A): 64.2719 35.8132 -47.1731 REMARK 3 T TENSOR REMARK 3 T11: -0.2799 T22: -0.2009 REMARK 3 T33: -0.2129 T12: 0.0061 REMARK 3 T13: 0.0375 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.1050 L22: 3.3206 REMARK 3 L33: 1.2349 L12: 0.8260 REMARK 3 L13: 0.0230 L23: -0.3159 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: 0.0506 S13: 0.0322 REMARK 3 S21: -0.2106 S22: 0.0743 S23: -0.1672 REMARK 3 S31: 0.0372 S32: 0.0582 S33: -0.0236 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 285 REMARK 3 RESIDUE RANGE : B 121 B 285 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0415 31.9100 -23.3408 REMARK 3 T TENSOR REMARK 3 T11: -0.0829 T22: -0.0838 REMARK 3 T33: -0.0754 T12: 0.0894 REMARK 3 T13: 0.1528 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 1.4747 L22: 2.3548 REMARK 3 L33: 1.6782 L12: -0.0610 REMARK 3 L13: -0.3046 L23: -0.0212 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.0993 S13: 0.2293 REMARK 3 S21: 0.5103 S22: 0.1190 S23: 0.5299 REMARK 3 S31: -0.2380 S32: -0.3346 S33: -0.1457 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 120 REMARK 3 RESIDUE RANGE : B 286 B 399 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0244 42.1065 5.3578 REMARK 3 T TENSOR REMARK 3 T11: 0.6405 T22: 0.2374 REMARK 3 T33: -0.0542 T12: -0.0326 REMARK 3 T13: 0.2664 T23: -0.1597 REMARK 3 L TENSOR REMARK 3 L11: 3.7978 L22: 2.9856 REMARK 3 L33: 3.8641 L12: 0.8744 REMARK 3 L13: 0.6488 L23: -0.5010 REMARK 3 S TENSOR REMARK 3 S11: 0.3436 S12: -0.8793 S13: 0.2557 REMARK 3 S21: 1.1801 S22: -0.1749 S23: 0.1743 REMARK 3 S31: -0.8804 S32: -0.3513 S33: -0.1687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.996 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 35.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LWD, 1T0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, SODIUM ACETATE, SUCCINATE, REMARK 280 NACL, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.23500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.46300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.02550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.46300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.02550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 236 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 337 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -135.11 50.13 REMARK 500 ASP A 137 -142.25 55.15 REMARK 500 PRO A 149 105.89 -42.63 REMARK 500 ASN A 158 -66.87 -167.93 REMARK 500 HIS A 167 142.63 -174.21 REMARK 500 LYS A 208 54.16 -111.75 REMARK 500 LYS B 5 -86.35 -76.76 REMARK 500 VAL B 6 92.42 88.21 REMARK 500 GLU B 17 -136.96 53.68 REMARK 500 ILE B 31 -68.31 -106.00 REMARK 500 ALA B 134 40.46 -86.72 REMARK 500 ASP B 137 -136.20 60.97 REMARK 500 ASN B 158 -95.54 130.30 REMARK 500 HIS B 167 140.58 -170.29 REMARK 500 LYS B 208 50.94 -112.11 REMARK 500 SER B 320 63.86 -109.30 REMARK 500 GLU B 345 -33.57 -155.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 157 ASN A 158 145.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 247 OD2 REMARK 620 2 ASP B 270 O 113.2 REMARK 620 3 ASP B 270 OD1 91.8 81.0 REMARK 620 4 ASP B 274 OD1 77.7 102.6 169.5 REMARK 620 5 HOH B1055 O 149.6 97.2 91.3 98.0 REMARK 620 6 HOH B1056 O 81.9 164.5 95.2 83.8 67.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 270 OD1 REMARK 620 2 ASP A 270 O 81.6 REMARK 620 3 ASP A 274 OD1 164.8 94.4 REMARK 620 4 HOH A1160 O 96.9 88.5 97.6 REMARK 620 5 HOH A1347 O 104.0 160.7 84.6 72.5 REMARK 620 6 ASP B 247 OD2 92.7 110.6 75.0 159.7 87.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1002 DBREF 1ZOR A 1 399 UNP Q9X0N2 Q9X0N2_THEMA 1 399 DBREF 1ZOR B 1 399 UNP Q9X0N2 Q9X0N2_THEMA 1 399 SEQRES 1 A 399 MET GLU LYS VAL LYS VAL LYS ASN PRO ILE VAL GLU LEU SEQRES 2 A 399 ASP GLY ASP GLU MET ALA ARG VAL MET TRP LYS MET ILE SEQRES 3 A 399 LYS GLU LYS LEU ILE LEU PRO TYR LEU ASP ILE GLN LEU SEQRES 4 A 399 VAL TYR PHE ASP LEU GLY ILE LYS LYS ARG ASP GLU THR SEQRES 5 A 399 ASP ASP GLN ILE THR ILE GLU ALA ALA LYS ALA ILE LYS SEQRES 6 A 399 LYS TYR GLY VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 A 399 ASP ALA GLU ARG VAL LYS GLU TYR ASN LEU LYS LYS ALA SEQRES 8 A 399 TRP LYS SER PRO ASN ALA THR ILE ARG ALA TYR LEU ASP SEQRES 9 A 399 GLY THR VAL PHE ARG LYS PRO ILE MET VAL LYS ASN VAL SEQRES 10 A 399 PRO PRO LEU VAL LYS ARG TRP LYS LYS PRO ILE ILE ILE SEQRES 11 A 399 GLY ARG HIS ALA TYR GLY ASP ILE TYR ASN ALA VAL GLU SEQRES 12 A 399 ALA LYS VAL GLU GLY PRO ALA GLU VAL GLU LEU VAL VAL SEQRES 13 A 399 ARG ASN LYS GLU ASN LYS THR LEU LEU VAL HIS LYS PHE SEQRES 14 A 399 GLU GLY ASN GLY VAL VAL MET ALA MET HIS ASN LEU GLU SEQRES 15 A 399 LYS SER ILE ARG SER PHE ALA GLN SER CYS ILE ASN TYR SEQRES 16 A 399 ALA ILE SER GLU LYS VAL ASP ILE TRP PHE ALA THR LYS SEQRES 17 A 399 ASP THR ILE SER LYS VAL TYR HIS ALA TYR PHE LYS ASP SEQRES 18 A 399 ILE PHE GLN GLU GLU VAL ASP LYS ARG LYS GLU GLU LEU SEQRES 19 A 399 GLU LYS ALA GLY VAL ASN TYR ARG TYR MET LEU ILE ASP SEQRES 20 A 399 ASP ALA ALA ALA GLN ILE LEU ARG SER GLU GLY GLY MET SEQRES 21 A 399 LEU TRP ALA CYS MET ASN TYR GLU GLY ASP ILE MET SER SEQRES 22 A 399 ASP MET ILE ALA SER GLY PHE GLY SER LEU GLY LEU MET SEQRES 23 A 399 THR SER VAL LEU VAL SER PRO ASP GLY VAL TYR GLU PHE SEQRES 24 A 399 GLU ALA ALA HIS GLY THR VAL ARG ARG HIS TYR TYR ARG SEQRES 25 A 399 TYR LEU LYS GLY GLU LYS THR SER THR ASN PRO THR ALA SEQRES 26 A 399 SER ILE PHE ALA TRP THR GLY ALA ILE ARG LYS ARG GLY SEQRES 27 A 399 GLU LEU ASP GLY THR PRO GLU VAL CYS GLU PHE ALA ASP SEQRES 28 A 399 LYS LEU GLU LYS ALA VAL ILE ASN THR ILE GLU SER GLY SEQRES 29 A 399 VAL ILE THR LYS ASP LEU GLN PRO PHE THR GLU PRO PRO SEQRES 30 A 399 ILE ASP LYS TYR VAL THR LEU GLU GLU PHE ILE ASP GLU SEQRES 31 A 399 VAL LYS LYS ASN LEU GLU LYS LEU LEU SEQRES 1 B 399 MET GLU LYS VAL LYS VAL LYS ASN PRO ILE VAL GLU LEU SEQRES 2 B 399 ASP GLY ASP GLU MET ALA ARG VAL MET TRP LYS MET ILE SEQRES 3 B 399 LYS GLU LYS LEU ILE LEU PRO TYR LEU ASP ILE GLN LEU SEQRES 4 B 399 VAL TYR PHE ASP LEU GLY ILE LYS LYS ARG ASP GLU THR SEQRES 5 B 399 ASP ASP GLN ILE THR ILE GLU ALA ALA LYS ALA ILE LYS SEQRES 6 B 399 LYS TYR GLY VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 B 399 ASP ALA GLU ARG VAL LYS GLU TYR ASN LEU LYS LYS ALA SEQRES 8 B 399 TRP LYS SER PRO ASN ALA THR ILE ARG ALA TYR LEU ASP SEQRES 9 B 399 GLY THR VAL PHE ARG LYS PRO ILE MET VAL LYS ASN VAL SEQRES 10 B 399 PRO PRO LEU VAL LYS ARG TRP LYS LYS PRO ILE ILE ILE SEQRES 11 B 399 GLY ARG HIS ALA TYR GLY ASP ILE TYR ASN ALA VAL GLU SEQRES 12 B 399 ALA LYS VAL GLU GLY PRO ALA GLU VAL GLU LEU VAL VAL SEQRES 13 B 399 ARG ASN LYS GLU ASN LYS THR LEU LEU VAL HIS LYS PHE SEQRES 14 B 399 GLU GLY ASN GLY VAL VAL MET ALA MET HIS ASN LEU GLU SEQRES 15 B 399 LYS SER ILE ARG SER PHE ALA GLN SER CYS ILE ASN TYR SEQRES 16 B 399 ALA ILE SER GLU LYS VAL ASP ILE TRP PHE ALA THR LYS SEQRES 17 B 399 ASP THR ILE SER LYS VAL TYR HIS ALA TYR PHE LYS ASP SEQRES 18 B 399 ILE PHE GLN GLU GLU VAL ASP LYS ARG LYS GLU GLU LEU SEQRES 19 B 399 GLU LYS ALA GLY VAL ASN TYR ARG TYR MET LEU ILE ASP SEQRES 20 B 399 ASP ALA ALA ALA GLN ILE LEU ARG SER GLU GLY GLY MET SEQRES 21 B 399 LEU TRP ALA CYS MET ASN TYR GLU GLY ASP ILE MET SER SEQRES 22 B 399 ASP MET ILE ALA SER GLY PHE GLY SER LEU GLY LEU MET SEQRES 23 B 399 THR SER VAL LEU VAL SER PRO ASP GLY VAL TYR GLU PHE SEQRES 24 B 399 GLU ALA ALA HIS GLY THR VAL ARG ARG HIS TYR TYR ARG SEQRES 25 B 399 TYR LEU LYS GLY GLU LYS THR SER THR ASN PRO THR ALA SEQRES 26 B 399 SER ILE PHE ALA TRP THR GLY ALA ILE ARG LYS ARG GLY SEQRES 27 B 399 GLU LEU ASP GLY THR PRO GLU VAL CYS GLU PHE ALA ASP SEQRES 28 B 399 LYS LEU GLU LYS ALA VAL ILE ASN THR ILE GLU SER GLY SEQRES 29 B 399 VAL ILE THR LYS ASP LEU GLN PRO PHE THR GLU PRO PRO SEQRES 30 B 399 ILE ASP LYS TYR VAL THR LEU GLU GLU PHE ILE ASP GLU SEQRES 31 B 399 VAL LYS LYS ASN LEU GLU LYS LEU LEU HET NA A1001 1 HET NA B1002 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *428(H2 O) HELIX 1 1 ASP A 16 ILE A 31 1 16 HELIX 2 2 GLY A 45 THR A 52 1 8 HELIX 3 3 ASP A 54 GLY A 68 1 15 HELIX 4 4 ASP A 79 ASN A 87 1 9 HELIX 5 5 SER A 94 ASP A 104 1 11 HELIX 6 6 GLY A 136 ALA A 141 5 6 HELIX 7 7 GLU A 182 LYS A 200 1 19 HELIX 8 8 VAL A 214 ARG A 230 1 17 HELIX 9 9 ARG A 230 ALA A 237 1 8 HELIX 10 10 ILE A 246 SER A 256 1 11 HELIX 11 11 MET A 265 GLY A 281 1 17 HELIX 12 12 SER A 282 GLY A 284 5 3 HELIX 13 13 VAL A 306 LEU A 314 1 9 HELIX 14 14 PRO A 323 GLY A 342 1 20 HELIX 15 15 THR A 343 SER A 363 1 21 HELIX 16 16 THR A 367 THR A 374 5 8 HELIX 17 17 THR A 383 LYS A 397 1 15 HELIX 18 18 ASP B 16 ILE B 31 1 16 HELIX 19 19 LEU B 32 LEU B 35 5 4 HELIX 20 20 GLY B 45 THR B 52 1 8 HELIX 21 21 ASP B 54 GLY B 68 1 15 HELIX 22 22 ASP B 79 ASN B 87 1 9 HELIX 23 23 SER B 94 ASP B 104 1 11 HELIX 24 24 GLY B 136 ALA B 141 5 6 HELIX 25 25 GLU B 182 LYS B 200 1 19 HELIX 26 26 VAL B 214 ARG B 230 1 17 HELIX 27 27 ARG B 230 GLY B 238 1 9 HELIX 28 28 ILE B 246 SER B 256 1 11 HELIX 29 29 MET B 265 GLY B 281 1 17 HELIX 30 30 SER B 282 GLY B 284 5 3 HELIX 31 31 VAL B 306 GLY B 316 1 11 HELIX 32 32 PRO B 323 GLY B 342 1 20 HELIX 33 33 GLU B 345 SER B 363 1 19 HELIX 34 34 THR B 367 GLN B 371 5 5 HELIX 35 35 THR B 383 LYS B 397 1 15 SHEET 1 A 2 VAL A 4 LYS A 5 0 SHEET 2 A 2 LEU A 35 ASP A 36 1 O ASP A 36 N VAL A 4 SHEET 1 B10 LEU A 39 ASP A 43 0 SHEET 2 B10 ILE A 10 ASP A 14 1 N GLU A 12 O PHE A 42 SHEET 3 B10 VAL A 69 LYS A 72 1 O VAL A 71 N LEU A 13 SHEET 4 B10 TYR A 297 ALA A 301 1 O PHE A 299 N LYS A 72 SHEET 5 B10 MET A 286 VAL A 291 -1 N LEU A 290 O GLU A 298 SHEET 6 B10 THR A 106 PRO A 111 -1 N LYS A 110 O THR A 287 SHEET 7 B10 ILE A 129 ARG A 132 -1 O ILE A 130 N ARG A 109 SHEET 8 B10 LEU A 261 CYS A 264 1 O CYS A 264 N GLY A 131 SHEET 9 B10 ILE A 203 THR A 207 1 N TRP A 204 O LEU A 261 SHEET 10 B10 TYR A 241 LEU A 245 1 O ARG A 242 N ILE A 203 SHEET 1 C 4 VAL A 142 VAL A 146 0 SHEET 2 C 4 GLY A 173 LEU A 181 -1 O GLY A 173 N VAL A 146 SHEET 3 C 4 GLY B 173 LEU B 181 -1 O MET B 176 N MET A 178 SHEET 4 C 4 VAL B 142 VAL B 146 -1 N VAL B 146 O GLY B 173 SHEET 1 D 4 LYS A 162 PHE A 169 0 SHEET 2 D 4 ALA A 150 ARG A 157 -1 N VAL A 156 O LYS A 162 SHEET 3 D 4 ALA B 150 ASN B 158 -1 O VAL B 155 N GLU A 153 SHEET 4 D 4 LYS B 162 PHE B 169 -1 O PHE B 169 N ALA B 150 SHEET 1 E10 LEU B 39 ASP B 43 0 SHEET 2 E10 ILE B 10 ASP B 14 1 N GLU B 12 O PHE B 42 SHEET 3 E10 VAL B 69 LYS B 72 1 O VAL B 71 N LEU B 13 SHEET 4 E10 TYR B 297 ALA B 301 1 O PHE B 299 N GLY B 70 SHEET 5 E10 MET B 286 VAL B 291 -1 N SER B 288 O GLU B 300 SHEET 6 E10 THR B 106 PRO B 111 -1 N PHE B 108 O VAL B 289 SHEET 7 E10 ILE B 129 ARG B 132 -1 O ILE B 130 N ARG B 109 SHEET 8 E10 LEU B 261 CYS B 264 1 O TRP B 262 N ILE B 129 SHEET 9 E10 ILE B 203 THR B 207 1 N TRP B 204 O LEU B 261 SHEET 10 E10 TYR B 241 LEU B 245 1 O ARG B 242 N ILE B 203 LINK OD2 ASP A 247 NA NA B1002 1555 1555 2.53 LINK OD1 ASP A 270 NA NA A1001 1555 1555 2.15 LINK O ASP A 270 NA NA A1001 1555 1555 2.64 LINK OD1 ASP A 274 NA NA A1001 1555 1555 2.34 LINK NA NA A1001 O HOH A1160 1555 1555 2.51 LINK NA NA A1001 O HOH A1347 1555 1555 2.48 LINK NA NA A1001 OD2 ASP B 247 1555 1555 2.45 LINK O ASP B 270 NA NA B1002 1555 1555 2.41 LINK OD1 ASP B 270 NA NA B1002 1555 1555 2.40 LINK OD1 ASP B 274 NA NA B1002 1555 1555 2.26 LINK NA NA B1002 O HOH B1055 1555 1555 2.53 LINK NA NA B1002 O HOH B1056 1555 1555 2.48 CISPEP 1 GLU A 375 PRO A 376 0 -3.11 CISPEP 2 GLU B 375 PRO B 376 0 -6.06 SITE 1 AC1 5 ASP A 270 ASP A 274 HOH A1160 HOH A1347 SITE 2 AC1 5 ASP B 247 SITE 1 AC2 5 ASP A 247 ASP B 270 ASP B 274 HOH B1055 SITE 2 AC2 5 HOH B1056 CRYST1 62.470 88.051 180.926 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016008 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005527 0.00000