HEADER TRANSFERASE 16-MAY-05 1ZP9 TITLE CRYSTAL STRUCTURE OF FULL-LEGNTH A.FULGIDUS RIO1 SERINE KINASE BOUND TITLE 2 TO ATP AND MN2+ IONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIO1 KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 GENE: RIO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RIO1, RIOK1, SERINE KINASE, PROTEIN KINASE, MANGANESE, RIBOSOME KEYWDS 2 BIOGENESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WLODAWER,N.LARONDE-LEBLANC REVDAT 6 15-NOV-23 1ZP9 1 REMARK REVDAT 5 23-AUG-23 1ZP9 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1ZP9 1 REMARK REVDAT 3 13-JUL-11 1ZP9 1 VERSN REVDAT 2 24-FEB-09 1ZP9 1 VERSN REVDAT 1 02-AUG-05 1ZP9 0 JRNL AUTH N.LARONDE-LEBLANC,T.GUSZCZYNSKI,T.COPELAND,A.WLODAWER JRNL TITL STRUCTURE AND ACTIVITY OF THE ATYPICAL SERINE KINASE RIO1. JRNL REF FEBS J. V. 272 3698 2005 JRNL REFN ISSN 1742-464X JRNL PMID 16008568 JRNL DOI 10.1111/J.1742-4658.2005.04796.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.DAUTER,I.BOTOS,N.LARONDE-LEBLANC,A.WLODAWER REMARK 1 TITL PATHOLOGICAL CRYSTALLOGRAPHY: CASE STUDIES OF SEVERAL REMARK 1 TITL 2 UNUSUAL MACROMOLECULAR CRYSTALS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 61 967 2005 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15983420 REMARK 1 DOI 10.1107/S0907444905011285 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 60003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3196 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3562 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7835 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 916 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.54000 REMARK 3 B22 (A**2) : 2.95000 REMARK 3 B33 (A**2) : -1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.224 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.634 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8100 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10914 ; 1.679 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 960 ; 6.189 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 380 ;33.617 ;24.237 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1500 ;17.077 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;19.821 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1187 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5964 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4319 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5582 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 887 ; 0.209 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 142 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 76 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4977 ; 1.205 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7708 ; 1.660 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3611 ; 3.040 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3206 ; 4.501 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000032982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZTF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, MES, PH REMARK 280 6.3, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.18650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 85 REMARK 465 THR A 86 REMARK 465 SER A 87 REMARK 465 GLU A 88 REMARK 465 PHE A 89 REMARK 465 ASP A 90 REMARK 465 LYS A 91 REMARK 465 ARG A 105 REMARK 465 ARG A 106 REMARK 465 ILE A 107 REMARK 465 SER A 108 REMARK 465 MSE B 1 REMARK 465 GLU B 85 REMARK 465 THR B 86 REMARK 465 SER B 87 REMARK 465 GLU B 88 REMARK 465 PHE B 89 REMARK 465 ASP B 90 REMARK 465 LYS B 91 REMARK 465 MSE B 92 REMARK 465 ASP B 103 REMARK 465 MSE B 104 REMARK 465 ARG B 105 REMARK 465 ARG B 106 REMARK 465 ILE B 107 REMARK 465 SER B 108 REMARK 465 PRO B 109 REMARK 465 GLU C 85 REMARK 465 THR C 86 REMARK 465 SER C 87 REMARK 465 GLU C 88 REMARK 465 PHE C 89 REMARK 465 ASP C 90 REMARK 465 LYS C 91 REMARK 465 GLU C 100 REMARK 465 ARG C 101 REMARK 465 PHE C 102 REMARK 465 ASP C 103 REMARK 465 MSE C 104 REMARK 465 ARG C 105 REMARK 465 ARG C 106 REMARK 465 ILE C 107 REMARK 465 SER C 108 REMARK 465 PRO C 109 REMARK 465 GLU D 85 REMARK 465 THR D 86 REMARK 465 SER D 87 REMARK 465 GLU D 88 REMARK 465 PHE D 89 REMARK 465 ASP D 90 REMARK 465 LYS D 91 REMARK 465 MSE D 104 REMARK 465 ARG D 105 REMARK 465 ARG D 106 REMARK 465 ILE D 107 REMARK 465 SER D 108 REMARK 465 PRO D 109 REMARK 465 GLU D 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 TYR A 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 PRO A 109 CG CD REMARK 470 LYS A 112 CD CE NZ REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 MSE C 1 CG SE CE REMARK 470 LYS C 6 CG CD CE NZ REMARK 470 LYS C 17 CG CD CE NZ REMARK 470 GLU C 18 CG CD OE1 OE2 REMARK 470 LYS C 19 CG CD CE NZ REMARK 470 ASP C 20 CG OD1 OD2 REMARK 470 GLU C 22 CG CD OE1 OE2 REMARK 470 LYS C 25 CG CD CE NZ REMARK 470 ASP C 93 CG OD1 OD2 REMARK 470 TYR C 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MSE D 1 CG SE CE REMARK 470 LYS D 5 CE NZ REMARK 470 LYS D 6 CD CE NZ REMARK 470 GLU D 22 CG CD OE1 OE2 REMARK 470 ASP D 103 CG OD1 OD2 REMARK 470 LYS D 110 CG CD CE NZ REMARK 470 GLU D 111 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 225 CG GLU D 225 CD 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 PRO A 109 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 PRO B 156 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 46.74 -77.05 REMARK 500 TYR A 138 -64.72 -108.18 REMARK 500 LYS A 142 -111.99 45.15 REMARK 500 ASP A 196 43.16 -153.13 REMARK 500 ILE A 205 -60.95 -108.05 REMARK 500 ASP A 212 78.65 69.44 REMARK 500 ASP B 20 47.74 -77.13 REMARK 500 TYR B 138 -63.93 -103.52 REMARK 500 LYS B 142 -117.80 54.60 REMARK 500 ALA B 195 -3.00 81.27 REMARK 500 ASP B 196 39.90 -147.57 REMARK 500 ASP B 206 -27.99 67.43 REMARK 500 ASP B 212 75.95 77.83 REMARK 500 ASP C 20 71.65 -106.24 REMARK 500 LYS C 142 -120.87 58.62 REMARK 500 ASP C 196 41.16 -151.59 REMARK 500 ASP C 206 -25.42 60.94 REMARK 500 ASP C 212 83.77 62.18 REMARK 500 ASP D 71 -125.35 55.79 REMARK 500 TYR D 138 -73.84 -111.82 REMARK 500 LYS D 142 -116.22 49.09 REMARK 500 ALA D 195 -3.62 77.21 REMARK 500 ASP D 196 41.25 -143.86 REMARK 500 ASP D 206 -43.16 62.05 REMARK 500 ASP D 212 92.77 67.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY D 72 LYS D 73 -139.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 259 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 201 OD1 REMARK 620 2 ASP A 212 OD2 94.5 REMARK 620 3 ATP A 260 O2A 93.0 98.6 REMARK 620 4 ATP A 260 O1B 171.7 93.7 86.9 REMARK 620 5 HOH A1229 O 73.6 166.1 75.4 98.4 REMARK 620 6 HOH A1858 O 84.4 100.1 161.3 93.1 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 259 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 201 OD1 REMARK 620 2 ASP B 212 OD2 92.7 REMARK 620 3 ATP B 260 O2A 88.7 94.2 REMARK 620 4 ATP B 260 O1B 174.7 91.7 88.0 REMARK 620 5 HOH B1140 O 74.3 161.8 73.2 100.8 REMARK 620 6 HOH B1805 O 98.6 85.1 172.7 84.8 109.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 259 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 201 OD1 REMARK 620 2 ASP C 212 OD2 94.8 REMARK 620 3 ATP C 260 O2A 87.3 104.7 REMARK 620 4 ATP C 260 O1B 173.4 91.7 89.9 REMARK 620 5 HOH C1338 O 91.4 79.5 175.6 91.0 REMARK 620 6 HOH C1784 O 84.8 167.3 88.0 89.1 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 259 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 201 OD1 REMARK 620 2 ASP D 212 OD2 95.1 REMARK 620 3 ATP D 260 O1B 176.3 81.8 REMARK 620 4 ATP D 260 O2A 86.8 94.0 91.4 REMARK 620 5 HOH D1115 O 92.3 87.1 89.6 178.6 REMARK 620 6 HOH D1899 O 90.4 170.8 92.9 93.7 85.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP D 260 DBREF 1ZP9 A 1 258 UNP O28471 O28471_ARCFU 1 258 DBREF 1ZP9 B 1 258 UNP O28471 O28471_ARCFU 1 258 DBREF 1ZP9 C 1 258 UNP O28471 O28471_ARCFU 1 258 DBREF 1ZP9 D 1 258 UNP O28471 O28471_ARCFU 1 258 SEQADV 1ZP9 MSE A 1 UNP O28471 MET 1 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 51 UNP O28471 MET 51 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 77 UNP O28471 MET 77 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 92 UNP O28471 MET 92 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 104 UNP O28471 MET 104 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 141 UNP O28471 MET 141 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 147 UNP O28471 MET 147 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 203 UNP O28471 MET 203 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 213 UNP O28471 MET 213 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 223 UNP O28471 MET 223 MODIFIED RESIDUE SEQADV 1ZP9 MSE A 251 UNP O28471 MET 251 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 1 UNP O28471 MET 1 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 51 UNP O28471 MET 51 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 77 UNP O28471 MET 77 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 92 UNP O28471 MET 92 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 104 UNP O28471 MET 104 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 141 UNP O28471 MET 141 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 147 UNP O28471 MET 147 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 203 UNP O28471 MET 203 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 213 UNP O28471 MET 213 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 223 UNP O28471 MET 223 MODIFIED RESIDUE SEQADV 1ZP9 MSE B 251 UNP O28471 MET 251 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 1 UNP O28471 MET 1 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 51 UNP O28471 MET 51 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 77 UNP O28471 MET 77 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 92 UNP O28471 MET 92 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 104 UNP O28471 MET 104 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 141 UNP O28471 MET 141 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 147 UNP O28471 MET 147 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 203 UNP O28471 MET 203 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 213 UNP O28471 MET 213 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 223 UNP O28471 MET 223 MODIFIED RESIDUE SEQADV 1ZP9 MSE C 251 UNP O28471 MET 251 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 1 UNP O28471 MET 1 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 51 UNP O28471 MET 51 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 77 UNP O28471 MET 77 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 92 UNP O28471 MET 92 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 104 UNP O28471 MET 104 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 141 UNP O28471 MET 141 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 147 UNP O28471 MET 147 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 203 UNP O28471 MET 203 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 213 UNP O28471 MET 213 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 223 UNP O28471 MET 223 MODIFIED RESIDUE SEQADV 1ZP9 MSE D 251 UNP O28471 MET 251 MODIFIED RESIDUE SEQRES 1 A 258 MSE LYS ASP LEU LYS LYS ILE GLU SER TYR LEU ASP LYS SEQRES 2 A 258 LEU ARG ILE LYS GLU LYS ASP GLY GLU GLU ARG LYS ILE SEQRES 3 A 258 TYR ALA GLU VAL LEU ASP GLY ARG THR LEU LYS THR LEU SEQRES 4 A 258 TYR LYS LEU SER ALA LYS GLY TYR ILE THR ALA MSE GLY SEQRES 5 A 258 GLY VAL ILE SER THR GLY LYS GLU ALA ASN VAL PHE TYR SEQRES 6 A 258 ALA ASP GLY VAL PHE ASP GLY LYS PRO VAL ALA MSE ALA SEQRES 7 A 258 VAL LYS ILE TYR ARG ILE GLU THR SER GLU PHE ASP LYS SEQRES 8 A 258 MSE ASP GLU TYR LEU TYR GLY ASP GLU ARG PHE ASP MSE SEQRES 9 A 258 ARG ARG ILE SER PRO LYS GLU LYS VAL PHE ILE TRP THR SEQRES 10 A 258 GLU LYS GLU PHE ARG ASN LEU GLU ARG ALA LYS GLU ALA SEQRES 11 A 258 GLY VAL SER VAL PRO GLN PRO TYR THR TYR MSE LYS ASN SEQRES 12 A 258 VAL LEU LEU MSE GLU PHE ILE GLY GLU ASP GLU LEU PRO SEQRES 13 A 258 ALA PRO THR LEU VAL GLU LEU GLY ARG GLU LEU LYS GLU SEQRES 14 A 258 LEU ASP VAL GLU GLY ILE PHE ASN ASP VAL VAL GLU ASN SEQRES 15 A 258 VAL LYS ARG LEU TYR GLN GLU ALA GLU LEU VAL HIS ALA SEQRES 16 A 258 ASP LEU SER GLU TYR ASN ILE MSE TYR ILE ASP LYS VAL SEQRES 17 A 258 TYR PHE ILE ASP MSE GLY GLN ALA VAL THR LEU ARG HIS SEQRES 18 A 258 PRO MSE ALA GLU SER TYR LEU GLU ARG ASP VAL ARG ASN SEQRES 19 A 258 ILE ILE ARG PHE PHE SER LYS TYR GLY VAL LYS ALA ASP SEQRES 20 A 258 PHE GLU GLU MSE LEU LYS GLU VAL LYS GLY GLU SEQRES 1 B 258 MSE LYS ASP LEU LYS LYS ILE GLU SER TYR LEU ASP LYS SEQRES 2 B 258 LEU ARG ILE LYS GLU LYS ASP GLY GLU GLU ARG LYS ILE SEQRES 3 B 258 TYR ALA GLU VAL LEU ASP GLY ARG THR LEU LYS THR LEU SEQRES 4 B 258 TYR LYS LEU SER ALA LYS GLY TYR ILE THR ALA MSE GLY SEQRES 5 B 258 GLY VAL ILE SER THR GLY LYS GLU ALA ASN VAL PHE TYR SEQRES 6 B 258 ALA ASP GLY VAL PHE ASP GLY LYS PRO VAL ALA MSE ALA SEQRES 7 B 258 VAL LYS ILE TYR ARG ILE GLU THR SER GLU PHE ASP LYS SEQRES 8 B 258 MSE ASP GLU TYR LEU TYR GLY ASP GLU ARG PHE ASP MSE SEQRES 9 B 258 ARG ARG ILE SER PRO LYS GLU LYS VAL PHE ILE TRP THR SEQRES 10 B 258 GLU LYS GLU PHE ARG ASN LEU GLU ARG ALA LYS GLU ALA SEQRES 11 B 258 GLY VAL SER VAL PRO GLN PRO TYR THR TYR MSE LYS ASN SEQRES 12 B 258 VAL LEU LEU MSE GLU PHE ILE GLY GLU ASP GLU LEU PRO SEQRES 13 B 258 ALA PRO THR LEU VAL GLU LEU GLY ARG GLU LEU LYS GLU SEQRES 14 B 258 LEU ASP VAL GLU GLY ILE PHE ASN ASP VAL VAL GLU ASN SEQRES 15 B 258 VAL LYS ARG LEU TYR GLN GLU ALA GLU LEU VAL HIS ALA SEQRES 16 B 258 ASP LEU SER GLU TYR ASN ILE MSE TYR ILE ASP LYS VAL SEQRES 17 B 258 TYR PHE ILE ASP MSE GLY GLN ALA VAL THR LEU ARG HIS SEQRES 18 B 258 PRO MSE ALA GLU SER TYR LEU GLU ARG ASP VAL ARG ASN SEQRES 19 B 258 ILE ILE ARG PHE PHE SER LYS TYR GLY VAL LYS ALA ASP SEQRES 20 B 258 PHE GLU GLU MSE LEU LYS GLU VAL LYS GLY GLU SEQRES 1 C 258 MSE LYS ASP LEU LYS LYS ILE GLU SER TYR LEU ASP LYS SEQRES 2 C 258 LEU ARG ILE LYS GLU LYS ASP GLY GLU GLU ARG LYS ILE SEQRES 3 C 258 TYR ALA GLU VAL LEU ASP GLY ARG THR LEU LYS THR LEU SEQRES 4 C 258 TYR LYS LEU SER ALA LYS GLY TYR ILE THR ALA MSE GLY SEQRES 5 C 258 GLY VAL ILE SER THR GLY LYS GLU ALA ASN VAL PHE TYR SEQRES 6 C 258 ALA ASP GLY VAL PHE ASP GLY LYS PRO VAL ALA MSE ALA SEQRES 7 C 258 VAL LYS ILE TYR ARG ILE GLU THR SER GLU PHE ASP LYS SEQRES 8 C 258 MSE ASP GLU TYR LEU TYR GLY ASP GLU ARG PHE ASP MSE SEQRES 9 C 258 ARG ARG ILE SER PRO LYS GLU LYS VAL PHE ILE TRP THR SEQRES 10 C 258 GLU LYS GLU PHE ARG ASN LEU GLU ARG ALA LYS GLU ALA SEQRES 11 C 258 GLY VAL SER VAL PRO GLN PRO TYR THR TYR MSE LYS ASN SEQRES 12 C 258 VAL LEU LEU MSE GLU PHE ILE GLY GLU ASP GLU LEU PRO SEQRES 13 C 258 ALA PRO THR LEU VAL GLU LEU GLY ARG GLU LEU LYS GLU SEQRES 14 C 258 LEU ASP VAL GLU GLY ILE PHE ASN ASP VAL VAL GLU ASN SEQRES 15 C 258 VAL LYS ARG LEU TYR GLN GLU ALA GLU LEU VAL HIS ALA SEQRES 16 C 258 ASP LEU SER GLU TYR ASN ILE MSE TYR ILE ASP LYS VAL SEQRES 17 C 258 TYR PHE ILE ASP MSE GLY GLN ALA VAL THR LEU ARG HIS SEQRES 18 C 258 PRO MSE ALA GLU SER TYR LEU GLU ARG ASP VAL ARG ASN SEQRES 19 C 258 ILE ILE ARG PHE PHE SER LYS TYR GLY VAL LYS ALA ASP SEQRES 20 C 258 PHE GLU GLU MSE LEU LYS GLU VAL LYS GLY GLU SEQRES 1 D 258 MSE LYS ASP LEU LYS LYS ILE GLU SER TYR LEU ASP LYS SEQRES 2 D 258 LEU ARG ILE LYS GLU LYS ASP GLY GLU GLU ARG LYS ILE SEQRES 3 D 258 TYR ALA GLU VAL LEU ASP GLY ARG THR LEU LYS THR LEU SEQRES 4 D 258 TYR LYS LEU SER ALA LYS GLY TYR ILE THR ALA MSE GLY SEQRES 5 D 258 GLY VAL ILE SER THR GLY LYS GLU ALA ASN VAL PHE TYR SEQRES 6 D 258 ALA ASP GLY VAL PHE ASP GLY LYS PRO VAL ALA MSE ALA SEQRES 7 D 258 VAL LYS ILE TYR ARG ILE GLU THR SER GLU PHE ASP LYS SEQRES 8 D 258 MSE ASP GLU TYR LEU TYR GLY ASP GLU ARG PHE ASP MSE SEQRES 9 D 258 ARG ARG ILE SER PRO LYS GLU LYS VAL PHE ILE TRP THR SEQRES 10 D 258 GLU LYS GLU PHE ARG ASN LEU GLU ARG ALA LYS GLU ALA SEQRES 11 D 258 GLY VAL SER VAL PRO GLN PRO TYR THR TYR MSE LYS ASN SEQRES 12 D 258 VAL LEU LEU MSE GLU PHE ILE GLY GLU ASP GLU LEU PRO SEQRES 13 D 258 ALA PRO THR LEU VAL GLU LEU GLY ARG GLU LEU LYS GLU SEQRES 14 D 258 LEU ASP VAL GLU GLY ILE PHE ASN ASP VAL VAL GLU ASN SEQRES 15 D 258 VAL LYS ARG LEU TYR GLN GLU ALA GLU LEU VAL HIS ALA SEQRES 16 D 258 ASP LEU SER GLU TYR ASN ILE MSE TYR ILE ASP LYS VAL SEQRES 17 D 258 TYR PHE ILE ASP MSE GLY GLN ALA VAL THR LEU ARG HIS SEQRES 18 D 258 PRO MSE ALA GLU SER TYR LEU GLU ARG ASP VAL ARG ASN SEQRES 19 D 258 ILE ILE ARG PHE PHE SER LYS TYR GLY VAL LYS ALA ASP SEQRES 20 D 258 PHE GLU GLU MSE LEU LYS GLU VAL LYS GLY GLU MODRES 1ZP9 MSE A 51 MET SELENOMETHIONINE MODRES 1ZP9 MSE A 77 MET SELENOMETHIONINE MODRES 1ZP9 MSE A 92 MET SELENOMETHIONINE MODRES 1ZP9 MSE A 104 MET SELENOMETHIONINE MODRES 1ZP9 MSE A 141 MET SELENOMETHIONINE MODRES 1ZP9 MSE A 147 MET SELENOMETHIONINE MODRES 1ZP9 MSE A 203 MET SELENOMETHIONINE MODRES 1ZP9 MSE A 213 MET SELENOMETHIONINE MODRES 1ZP9 MSE A 223 MET SELENOMETHIONINE MODRES 1ZP9 MSE A 251 MET SELENOMETHIONINE MODRES 1ZP9 MSE B 51 MET SELENOMETHIONINE MODRES 1ZP9 MSE B 77 MET SELENOMETHIONINE MODRES 1ZP9 MSE B 141 MET SELENOMETHIONINE MODRES 1ZP9 MSE B 147 MET SELENOMETHIONINE MODRES 1ZP9 MSE B 203 MET SELENOMETHIONINE MODRES 1ZP9 MSE B 213 MET SELENOMETHIONINE MODRES 1ZP9 MSE B 223 MET SELENOMETHIONINE MODRES 1ZP9 MSE B 251 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 1 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 51 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 77 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 92 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 141 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 147 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 203 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 213 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 223 MET SELENOMETHIONINE MODRES 1ZP9 MSE C 251 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 1 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 51 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 77 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 92 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 141 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 147 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 203 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 213 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 223 MET SELENOMETHIONINE MODRES 1ZP9 MSE D 251 MET SELENOMETHIONINE HET MSE A 51 8 HET MSE A 77 8 HET MSE A 92 8 HET MSE A 104 8 HET MSE A 141 8 HET MSE A 147 8 HET MSE A 203 8 HET MSE A 213 8 HET MSE A 223 8 HET MSE A 251 8 HET MSE B 51 8 HET MSE B 77 8 HET MSE B 141 8 HET MSE B 147 8 HET MSE B 203 8 HET MSE B 213 8 HET MSE B 223 8 HET MSE B 251 8 HET MSE C 1 5 HET MSE C 51 8 HET MSE C 77 8 HET MSE C 92 8 HET MSE C 141 8 HET MSE C 147 8 HET MSE C 203 8 HET MSE C 213 8 HET MSE C 223 8 HET MSE C 251 8 HET MSE D 1 5 HET MSE D 51 8 HET MSE D 77 8 HET MSE D 92 8 HET MSE D 141 8 HET MSE D 147 8 HET MSE D 203 8 HET MSE D 213 8 HET MSE D 223 8 HET MSE D 251 8 HET MN A 259 1 HET ATP A 260 31 HET MN B 259 1 HET ATP B 260 31 HET MN C 259 1 HET ATP C 260 31 HET MN D 259 1 HET ATP D 260 31 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 1 MSE 38(C5 H11 N O2 SE) FORMUL 5 MN 4(MN 2+) FORMUL 6 ATP 4(C10 H16 N5 O13 P3) FORMUL 13 HOH *916(H2 O) HELIX 1 1 ASP A 3 ARG A 15 1 13 HELIX 2 2 GLU A 22 LEU A 31 1 10 HELIX 3 3 ASP A 32 LYS A 45 1 14 HELIX 4 4 MSE A 92 LEU A 96 5 5 HELIX 5 5 PRO A 109 ALA A 130 1 22 HELIX 6 6 THR A 159 GLY A 164 1 6 HELIX 7 7 ARG A 165 LEU A 170 5 6 HELIX 8 8 ASP A 171 GLU A 189 1 19 HELIX 9 9 MSE A 223 LYS A 241 1 19 HELIX 10 10 ASP A 247 GLY A 257 1 11 HELIX 11 11 LYS B 2 LEU B 14 1 13 HELIX 12 12 GLU B 22 LEU B 31 1 10 HELIX 13 13 ASP B 32 LYS B 45 1 14 HELIX 14 14 GLU B 111 ALA B 130 1 20 HELIX 15 15 THR B 159 GLY B 164 1 6 HELIX 16 16 ARG B 165 LEU B 170 5 6 HELIX 17 17 ASP B 171 GLU B 189 1 19 HELIX 18 18 SER B 198 TYR B 200 5 3 HELIX 19 19 MSE B 223 LYS B 241 1 19 HELIX 20 20 ASP B 247 GLY B 257 1 11 HELIX 21 21 LYS C 6 LEU C 14 1 9 HELIX 22 22 ASP C 20 LEU C 31 1 12 HELIX 23 23 ASP C 32 LYS C 45 1 14 HELIX 24 24 MSE C 92 TYR C 97 1 6 HELIX 25 25 GLU C 111 ALA C 130 1 20 HELIX 26 26 THR C 159 GLY C 164 1 6 HELIX 27 27 ARG C 165 LEU C 170 5 6 HELIX 28 28 ASP C 171 GLU C 189 1 19 HELIX 29 29 MSE C 223 LYS C 241 1 19 HELIX 30 30 ASP C 247 GLY C 257 1 11 HELIX 31 31 LYS D 6 LEU D 14 1 9 HELIX 32 32 ASP D 20 LEU D 31 1 12 HELIX 33 33 ASP D 32 LYS D 45 1 14 HELIX 34 34 MSE D 92 TYR D 97 1 6 HELIX 35 35 LYS D 110 ALA D 130 1 21 HELIX 36 36 THR D 159 GLY D 164 1 6 HELIX 37 37 ARG D 165 GLU D 169 5 5 HELIX 38 38 ASP D 171 GLU D 189 1 19 HELIX 39 39 MSE D 223 LYS D 241 1 19 HELIX 40 40 ASP D 247 LYS D 256 1 10 SHEET 1 A 5 ILE A 48 THR A 57 0 SHEET 2 A 5 ALA A 61 PHE A 70 -1 O TYR A 65 N GLY A 52 SHEET 3 A 5 LYS A 73 TYR A 82 -1 O VAL A 79 N PHE A 64 SHEET 4 A 5 VAL A 144 GLU A 148 -1 O LEU A 145 N LYS A 80 SHEET 5 A 5 PRO A 137 MSE A 141 -1 N THR A 139 O LEU A 146 SHEET 1 B 2 GLY A 151 GLU A 152 0 SHEET 2 B 2 LEU A 155 PRO A 156 -1 O LEU A 155 N GLU A 152 SHEET 1 C 2 LEU A 192 VAL A 193 0 SHEET 2 C 2 VAL A 217 THR A 218 -1 O VAL A 217 N VAL A 193 SHEET 1 D 2 ILE A 202 TYR A 204 0 SHEET 2 D 2 VAL A 208 PHE A 210 -1 O TYR A 209 N MSE A 203 SHEET 1 E 5 ILE B 48 THR B 57 0 SHEET 2 E 5 ALA B 61 PHE B 70 -1 O TYR B 65 N GLY B 52 SHEET 3 E 5 LYS B 73 TYR B 82 -1 O ILE B 81 N ASN B 62 SHEET 4 E 5 VAL B 144 GLU B 148 -1 O LEU B 145 N LYS B 80 SHEET 5 E 5 PRO B 137 MSE B 141 -1 N THR B 139 O LEU B 146 SHEET 1 F 2 GLY B 151 GLU B 152 0 SHEET 2 F 2 LEU B 155 PRO B 156 -1 O LEU B 155 N GLU B 152 SHEET 1 G 2 LEU B 192 VAL B 193 0 SHEET 2 G 2 VAL B 217 THR B 218 -1 O VAL B 217 N VAL B 193 SHEET 1 H 2 ILE B 202 TYR B 204 0 SHEET 2 H 2 VAL B 208 PHE B 210 -1 O TYR B 209 N MSE B 203 SHEET 1 I 5 ILE C 48 THR C 57 0 SHEET 2 I 5 ALA C 61 PHE C 70 -1 O TYR C 65 N GLY C 52 SHEET 3 I 5 LYS C 73 TYR C 82 -1 O VAL C 75 N GLY C 68 SHEET 4 I 5 VAL C 144 GLU C 148 -1 O LEU C 145 N LYS C 80 SHEET 5 I 5 PRO C 137 MSE C 141 -1 N THR C 139 O LEU C 146 SHEET 1 J 2 GLY C 151 GLU C 152 0 SHEET 2 J 2 LEU C 155 PRO C 156 -1 O LEU C 155 N GLU C 152 SHEET 1 K 2 LEU C 192 VAL C 193 0 SHEET 2 K 2 VAL C 217 THR C 218 -1 O VAL C 217 N VAL C 193 SHEET 1 L 2 ILE C 202 TYR C 204 0 SHEET 2 L 2 VAL C 208 PHE C 210 -1 O TYR C 209 N MSE C 203 SHEET 1 M 5 ILE D 48 THR D 57 0 SHEET 2 M 5 ALA D 61 PHE D 70 -1 O VAL D 63 N ILE D 55 SHEET 3 M 5 LYS D 73 TYR D 82 -1 O MSE D 77 N ALA D 66 SHEET 4 M 5 VAL D 144 GLU D 148 -1 O LEU D 145 N LYS D 80 SHEET 5 M 5 PRO D 137 MSE D 141 -1 N THR D 139 O LEU D 146 SHEET 1 N 2 GLY D 151 GLU D 152 0 SHEET 2 N 2 LEU D 155 PRO D 156 -1 O LEU D 155 N GLU D 152 SHEET 1 O 2 LEU D 192 VAL D 193 0 SHEET 2 O 2 VAL D 217 THR D 218 -1 O VAL D 217 N VAL D 193 SHEET 1 P 2 ILE D 202 TYR D 204 0 SHEET 2 P 2 VAL D 208 PHE D 210 -1 O TYR D 209 N MSE D 203 LINK C ALA A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N GLY A 52 1555 1555 1.34 LINK C ALA A 76 N MSE A 77 1555 1555 1.32 LINK C MSE A 77 N ALA A 78 1555 1555 1.34 LINK C MSE A 92 N ASP A 93 1555 1555 1.34 LINK C ASP A 103 N MSE A 104 1555 1555 1.33 LINK C TYR A 140 N MSE A 141 1555 1555 1.31 LINK C MSE A 141 N LYS A 142 1555 1555 1.32 LINK C LEU A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N GLU A 148 1555 1555 1.32 LINK C ILE A 202 N MSE A 203 1555 1555 1.34 LINK C MSE A 203 N TYR A 204 1555 1555 1.33 LINK C ASP A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N GLY A 214 1555 1555 1.34 LINK C PRO A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N ALA A 224 1555 1555 1.35 LINK C GLU A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N LEU A 252 1555 1555 1.33 LINK C ALA B 50 N MSE B 51 1555 1555 1.34 LINK C MSE B 51 N GLY B 52 1555 1555 1.34 LINK C ALA B 76 N MSE B 77 1555 1555 1.32 LINK C MSE B 77 N ALA B 78 1555 1555 1.33 LINK C TYR B 140 N MSE B 141 1555 1555 1.33 LINK C MSE B 141 N LYS B 142 1555 1555 1.33 LINK C LEU B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N GLU B 148 1555 1555 1.33 LINK C ILE B 202 N MSE B 203 1555 1555 1.33 LINK C MSE B 203 N TYR B 204 1555 1555 1.32 LINK C ASP B 212 N MSE B 213 1555 1555 1.32 LINK C MSE B 213 N GLY B 214 1555 1555 1.33 LINK C PRO B 222 N MSE B 223 1555 1555 1.32 LINK C MSE B 223 N ALA B 224 1555 1555 1.33 LINK C GLU B 250 N MSE B 251 1555 1555 1.33 LINK C MSE B 251 N LEU B 252 1555 1555 1.33 LINK C MSE C 1 N LYS C 2 1555 1555 1.34 LINK C ALA C 50 N MSE C 51 1555 1555 1.33 LINK C MSE C 51 N GLY C 52 1555 1555 1.34 LINK C ALA C 76 N MSE C 77 1555 1555 1.33 LINK C MSE C 77 N ALA C 78 1555 1555 1.33 LINK C MSE C 92 N ASP C 93 1555 1555 1.33 LINK C TYR C 140 N MSE C 141 1555 1555 1.32 LINK C MSE C 141 N LYS C 142 1555 1555 1.33 LINK C LEU C 146 N MSE C 147 1555 1555 1.33 LINK C MSE C 147 N GLU C 148 1555 1555 1.33 LINK C ILE C 202 N MSE C 203 1555 1555 1.35 LINK C MSE C 203 N TYR C 204 1555 1555 1.32 LINK C ASP C 212 N MSE C 213 1555 1555 1.34 LINK C MSE C 213 N GLY C 214 1555 1555 1.33 LINK C PRO C 222 N MSE C 223 1555 1555 1.33 LINK C MSE C 223 N ALA C 224 1555 1555 1.33 LINK C GLU C 250 N MSE C 251 1555 1555 1.34 LINK C MSE C 251 N LEU C 252 1555 1555 1.34 LINK C MSE D 1 N LYS D 2 1555 1555 1.34 LINK C ALA D 50 N MSE D 51 1555 1555 1.33 LINK C MSE D 51 N GLY D 52 1555 1555 1.34 LINK C ALA D 76 N MSE D 77 1555 1555 1.34 LINK C MSE D 77 N ALA D 78 1555 1555 1.35 LINK C MSE D 92 N ASP D 93 1555 1555 1.33 LINK C TYR D 140 N MSE D 141 1555 1555 1.32 LINK C MSE D 141 N LYS D 142 1555 1555 1.33 LINK C LEU D 146 N MSE D 147 1555 1555 1.34 LINK C MSE D 147 N GLU D 148 1555 1555 1.33 LINK C ILE D 202 N MSE D 203 1555 1555 1.33 LINK C MSE D 203 N TYR D 204 1555 1555 1.33 LINK C ASP D 212 N MSE D 213 1555 1555 1.34 LINK C MSE D 213 N GLY D 214 1555 1555 1.33 LINK C PRO D 222 N MSE D 223 1555 1555 1.34 LINK C MSE D 223 N ALA D 224 1555 1555 1.33 LINK C GLU D 250 N MSE D 251 1555 1555 1.33 LINK C MSE D 251 N LEU D 252 1555 1555 1.32 LINK OD1 ASN A 201 MN MN A 259 1555 1555 2.25 LINK OD2 ASP A 212 MN MN A 259 1555 1555 2.07 LINK MN MN A 259 O2A ATP A 260 1555 1555 2.05 LINK MN MN A 259 O1B ATP A 260 1555 1555 2.17 LINK MN MN A 259 O HOH A1229 1555 1555 2.15 LINK MN MN A 259 O HOH A1858 1555 1555 1.84 LINK OD1 ASN B 201 MN MN B 259 1555 1555 2.21 LINK OD2 ASP B 212 MN MN B 259 1555 1555 2.03 LINK MN MN B 259 O2A ATP B 260 1555 1555 2.08 LINK MN MN B 259 O1B ATP B 260 1555 1555 2.11 LINK MN MN B 259 O HOH B1140 1555 1555 2.22 LINK MN MN B 259 O HOH B1805 1555 1555 2.04 LINK OD1 ASN C 201 MN MN C 259 1555 1555 2.26 LINK OD2 ASP C 212 MN MN C 259 1555 1555 2.30 LINK MN MN C 259 O2A ATP C 260 1555 1555 2.17 LINK MN MN C 259 O1B ATP C 260 1555 1555 2.15 LINK MN MN C 259 O HOH C1338 1555 1555 2.31 LINK MN MN C 259 O HOH C1784 1555 1555 2.25 LINK OD1 ASN D 201 MN MN D 259 1555 1555 2.13 LINK OD2 ASP D 212 MN MN D 259 1555 1555 2.17 LINK MN MN D 259 O1B ATP D 260 1555 1555 2.34 LINK MN MN D 259 O2A ATP D 260 1555 1555 2.18 LINK MN MN D 259 O HOH D1115 1555 1555 2.23 LINK MN MN D 259 O HOH D1899 1555 1555 2.12 SITE 1 AC1 5 ASN A 201 ASP A 212 ATP A 260 HOH A1229 SITE 2 AC1 5 HOH A1858 SITE 1 AC2 5 ASN B 201 ASP B 212 ATP B 260 HOH B1140 SITE 2 AC2 5 HOH B1805 SITE 1 AC3 5 ASN C 201 ASP C 212 ATP C 260 HOH C1338 SITE 2 AC3 5 HOH C1784 SITE 1 AC4 5 ASN D 201 ASP D 212 ATP D 260 HOH D1115 SITE 2 AC4 5 HOH D1899 SITE 1 AC5 29 ILE A 55 SER A 56 ALA A 61 ALA A 78 SITE 2 AC5 29 LYS A 80 TYR A 82 PRO A 135 MSE A 147 SITE 3 AC5 29 GLU A 148 PHE A 149 ILE A 150 THR A 159 SITE 4 AC5 29 ASN A 201 MSE A 203 ILE A 211 ASP A 212 SITE 5 AC5 29 MN A 259 HOH A1028 HOH A1046 HOH A1081 SITE 6 AC5 29 HOH A1113 HOH A1118 HOH A1229 HOH A1414 SITE 7 AC5 29 HOH A1540 HOH A1741 HOH A1858 HOH A1910 SITE 8 AC5 29 HOH B1068 SITE 1 AC6 26 HOH A1075 ILE B 55 SER B 56 GLU B 60 SITE 2 AC6 26 ALA B 78 LYS B 80 TYR B 82 PRO B 135 SITE 3 AC6 26 MSE B 147 GLU B 148 PHE B 149 ILE B 150 SITE 4 AC6 26 ASN B 201 ILE B 211 ASP B 212 MN B 259 SITE 5 AC6 26 HOH B1025 HOH B1034 HOH B1056 HOH B1101 SITE 6 AC6 26 HOH B1140 HOH B1348 HOH B1499 HOH B1705 SITE 7 AC6 26 HOH B1722 HOH B1805 SITE 1 AC7 27 ILE C 55 GLU C 60 ALA C 61 ALA C 78 SITE 2 AC7 27 LYS C 80 TYR C 82 MSE C 147 GLU C 148 SITE 3 AC7 27 PHE C 149 ILE C 150 PRO C 156 THR C 159 SITE 4 AC7 27 ASN C 201 ILE C 211 ASP C 212 MN C 259 SITE 5 AC7 27 HOH C1011 HOH C1013 HOH C1158 HOH C1265 SITE 6 AC7 27 HOH C1312 HOH C1334 HOH C1358 HOH C1410 SITE 7 AC7 27 HOH C1601 HOH C1784 HOH D1376 SITE 1 AC8 30 HOH C1357 ILE D 55 SER D 56 GLU D 60 SITE 2 AC8 30 ALA D 61 ALA D 78 LYS D 80 TYR D 82 SITE 3 AC8 30 PRO D 135 MSE D 147 GLU D 148 PHE D 149 SITE 4 AC8 30 ILE D 150 PRO D 156 THR D 159 ASN D 201 SITE 5 AC8 30 ILE D 211 ASP D 212 MN D 259 HOH D1098 SITE 6 AC8 30 HOH D1166 HOH D1180 HOH D1197 HOH D1200 SITE 7 AC8 30 HOH D1213 HOH D1283 HOH D1303 HOH D1340 SITE 8 AC8 30 HOH D1548 HOH D1614 CRYST1 53.306 80.373 121.320 90.00 90.02 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018760 0.000000 0.000007 0.00000 SCALE2 0.000000 0.012442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008243 0.00000