HEADER VIRAL PROTEIN 22-MAY-05 1ZRU TITLE STRUCTURE OF THE LACTOPHAGE P2 RECEPTOR BINDING PROTEIN IN COMPLEX TITLE 2 WITH GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOPHAGE P2 RECEPTOR BINDING PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS PHAGE P2; SOURCE 3 ORGANISM_TAXID: 100641; SOURCE 4 GENE: ORF 18; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K12 KEYWDS 3 DOMAINS: BETA BARREL, BETA PRISM, BETA BARREL, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL PROTEOMICS IN EUROPE, SPINE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SPINELLI,D.M.TREMBLAY,M.TEGONI,S.BLANGY,C.HUYGHE,A.DESMYTER, AUTHOR 2 S.LABRIE,H.DE HAARD,S.MOINEAU,C.CAMBILLAU,STRUCTURAL PROTEOMICS IN AUTHOR 3 EUROPE (SPINE) REVDAT 4 23-AUG-23 1ZRU 1 REMARK REVDAT 3 13-JUL-11 1ZRU 1 VERSN REVDAT 2 24-FEB-09 1ZRU 1 VERSN REVDAT 1 28-MAR-06 1ZRU 0 JRNL AUTH D.M.TREMBLAY,M.TEGONI,S.SPINELLI,V.CAMPANACCI,S.BLANGY, JRNL AUTH 2 C.HUYGHE,A.DESMYTER,S.LABRIE,S.MOINEAU,C.CAMBILLAU JRNL TITL RECEPTOR-BINDING PROTEIN OF LACTOCOCCUS LACTIS PHAGES: JRNL TITL 2 IDENTIFICATION AND CHARACTERIZATION OF THE SACCHARIDE JRNL TITL 3 RECEPTOR-BINDING SITE. JRNL REF J.BACTERIOL. V. 188 2400 2006 JRNL REFN ISSN 0021-9193 JRNL PMID 16547026 JRNL DOI 10.1128/JB.188.7.2400-2410.2006 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 110279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1106 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 1144 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5915 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8039 ; 1.281 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 752 ; 6.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;38.199 ;25.059 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 953 ;11.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.623 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 940 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4421 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2748 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4052 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 929 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3834 ; 0.833 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6072 ; 1.356 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2371 ; 2.189 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1967 ; 3.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4043 47.9327 48.4772 REMARK 3 T TENSOR REMARK 3 T11: -.0177 T22: .0038 REMARK 3 T33: -.0044 T12: -.0004 REMARK 3 T13: .0081 T23: -.0052 REMARK 3 L TENSOR REMARK 3 L11: .0407 L22: .2155 REMARK 3 L33: .1477 L12: -.0100 REMARK 3 L13: .0556 L23: .1100 REMARK 3 S TENSOR REMARK 3 S11: -.0093 S12: .0132 S13: .0057 REMARK 3 S21: -.0221 S22: .0043 S23: -.0272 REMARK 3 S31: -.0186 S32: -.0220 S33: .0049 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 264 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4909 36.2642 55.6230 REMARK 3 T TENSOR REMARK 3 T11: .0058 T22: -.0118 REMARK 3 T33: -.0032 T12: -.0013 REMARK 3 T13: .0019 T23: .0047 REMARK 3 L TENSOR REMARK 3 L11: .2074 L22: .1495 REMARK 3 L33: .0383 L12: .1480 REMARK 3 L13: .0531 L23: .0709 REMARK 3 S TENSOR REMARK 3 S11: .0154 S12: -.0288 S13: -.0314 REMARK 3 S21: -.0036 S22: -.0147 S23: -.0398 REMARK 3 S31: .0214 S32: .0132 S33: -.0007 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 264 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2389 39.5272 64.9936 REMARK 3 T TENSOR REMARK 3 T11: -.0184 T22: -.0137 REMARK 3 T33: .0151 T12: .0103 REMARK 3 T13: -.0138 T23: -.0016 REMARK 3 L TENSOR REMARK 3 L11: .0592 L22: .1533 REMARK 3 L33: .3205 L12: .0919 REMARK 3 L13: .0564 L23: .1411 REMARK 3 S TENSOR REMARK 3 S11: -.0112 S12: -.0139 S13: -.0168 REMARK 3 S21: .0032 S22: -.0038 S23: -.0015 REMARK 3 S31: -.0098 S32: -.0264 S33: .0150 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000033044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DIAMOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110279 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 40.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2BSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.55300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.86250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.02850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.86250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.55300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.02850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 ASN A 12 REMARK 465 SER A 13 REMARK 465 THR A 14 REMARK 465 GLU A 15 REMARK 465 PHE A 16 REMARK 465 PRO A 17 REMARK 465 VAL A 18 REMARK 465 MET B 1 REMARK 465 THR B 7 REMARK 465 PHE B 8 REMARK 465 PHE B 9 REMARK 465 SER B 10 REMARK 465 PRO B 11 REMARK 465 ASN B 12 REMARK 465 SER B 13 REMARK 465 THR B 14 REMARK 465 GLU B 15 REMARK 465 PHE B 16 REMARK 465 PRO B 17 REMARK 465 VAL B 18 REMARK 465 MET C 1 REMARK 465 SER C 10 REMARK 465 PRO C 11 REMARK 465 ASN C 12 REMARK 465 SER C 13 REMARK 465 THR C 14 REMARK 465 GLU C 15 REMARK 465 PHE C 16 REMARK 465 PRO C 17 REMARK 465 VAL C 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LYS A 264 O HOH A 2384 1.77 REMARK 500 SD MET B 203 O HOH B 2360 2.18 REMARK 500 O HOH B 2236 O HOH B 2380 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 6 -54.93 -132.01 REMARK 500 ASP A 34 -167.99 -102.72 REMARK 500 ALA A 50 -135.73 49.61 REMARK 500 LEU A 51 59.74 -91.93 REMARK 500 ASN A 57 91.85 -160.24 REMARK 500 ASP A 146 -82.19 -100.82 REMARK 500 ASP A 184 -61.22 -147.50 REMARK 500 ASP A 249 -149.28 -81.12 REMARK 500 ASP B 34 -167.06 -104.77 REMARK 500 ALA B 50 -134.09 47.74 REMARK 500 LEU B 51 56.88 -91.61 REMARK 500 GLN B 92 73.74 -61.60 REMARK 500 ASP B 146 -82.44 -98.62 REMARK 500 ASP B 184 -60.82 -148.38 REMARK 500 ASP B 249 -157.82 -80.82 REMARK 500 ALA C 50 -139.47 49.90 REMARK 500 LEU C 51 57.41 -90.56 REMARK 500 ASN C 95 84.09 -152.06 REMARK 500 ASP C 146 -75.94 -97.86 REMARK 500 ASP C 184 -57.66 -149.29 REMARK 500 ASP C 249 -157.35 -81.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BSD RELATED DB: PDB REMARK 900 NATIVE PROTEIN REMARK 900 RELATED ID: 2BSE RELATED DB: PDB REMARK 900 NATIVE PROTEIN HEAD DOMAIN IN COMPLEX WITH A LLAMA VHH DOMAIN DBREF 1ZRU A 1 264 UNP Q71AW2 Q71AW2_9CAUD 1 264 DBREF 1ZRU B 1 264 UNP Q71AW2 Q71AW2_9CAUD 1 264 DBREF 1ZRU C 1 264 UNP Q71AW2 Q71AW2_9CAUD 1 264 SEQRES 1 A 264 MET THR ILE LYS ASN PHE THR PHE PHE SER PRO ASN SER SEQRES 2 A 264 THR GLU PHE PRO VAL GLY SER ASN ASN ASP GLY LYS LEU SEQRES 3 A 264 TYR MET MET LEU THR GLY MET ASP TYR ARG THR ILE ARG SEQRES 4 A 264 ARG LYS ASP TRP SER SER PRO LEU ASN THR ALA LEU ASN SEQRES 5 A 264 VAL GLN TYR THR ASN THR SER ILE ILE ALA GLY GLY ARG SEQRES 6 A 264 TYR PHE GLU LEU LEU ASN GLU THR VAL ALA LEU LYS GLY SEQRES 7 A 264 ASP SER VAL ASN TYR ILE HIS ALA ASN ILE ASP LEU THR SEQRES 8 A 264 GLN THR ALA ASN PRO VAL SER LEU SER ALA GLU THR ALA SEQRES 9 A 264 ASN ASN SER ASN GLY VAL ASP ILE ASN ASN GLY SER GLY SEQRES 10 A 264 VAL LEU LYS VAL CYS PHE ASP ILE VAL THR THR SER GLY SEQRES 11 A 264 THR GLY VAL THR SER THR LYS PRO ILE VAL GLN THR SER SEQRES 12 A 264 THR LEU ASP SER ILE SER VAL ASN ASP MET THR VAL SER SEQRES 13 A 264 GLY SER ILE ASP VAL PRO VAL GLN THR LEU THR VAL GLU SEQRES 14 A 264 ALA GLY ASN GLY LEU GLN LEU GLN LEU THR LYS LYS ASN SEQRES 15 A 264 ASN ASP LEU VAL ILE VAL ARG PHE PHE GLY SER VAL SER SEQRES 16 A 264 ASN ILE GLN LYS GLY TRP ASN MET SER GLY THR TRP VAL SEQRES 17 A 264 ASP ARG PRO PHE ARG PRO ALA ALA VAL GLN SER LEU VAL SEQRES 18 A 264 GLY HIS PHE ALA GLY ARG ASP THR SER PHE HIS ILE ASP SEQRES 19 A 264 ILE ASN PRO ASN GLY SER ILE THR TRP TRP GLY ALA ASN SEQRES 20 A 264 ILE ASP LYS THR PRO ILE ALA THR ARG GLY ASN GLY SER SEQRES 21 A 264 TYR PHE ILE LYS SEQRES 1 B 264 MET THR ILE LYS ASN PHE THR PHE PHE SER PRO ASN SER SEQRES 2 B 264 THR GLU PHE PRO VAL GLY SER ASN ASN ASP GLY LYS LEU SEQRES 3 B 264 TYR MET MET LEU THR GLY MET ASP TYR ARG THR ILE ARG SEQRES 4 B 264 ARG LYS ASP TRP SER SER PRO LEU ASN THR ALA LEU ASN SEQRES 5 B 264 VAL GLN TYR THR ASN THR SER ILE ILE ALA GLY GLY ARG SEQRES 6 B 264 TYR PHE GLU LEU LEU ASN GLU THR VAL ALA LEU LYS GLY SEQRES 7 B 264 ASP SER VAL ASN TYR ILE HIS ALA ASN ILE ASP LEU THR SEQRES 8 B 264 GLN THR ALA ASN PRO VAL SER LEU SER ALA GLU THR ALA SEQRES 9 B 264 ASN ASN SER ASN GLY VAL ASP ILE ASN ASN GLY SER GLY SEQRES 10 B 264 VAL LEU LYS VAL CYS PHE ASP ILE VAL THR THR SER GLY SEQRES 11 B 264 THR GLY VAL THR SER THR LYS PRO ILE VAL GLN THR SER SEQRES 12 B 264 THR LEU ASP SER ILE SER VAL ASN ASP MET THR VAL SER SEQRES 13 B 264 GLY SER ILE ASP VAL PRO VAL GLN THR LEU THR VAL GLU SEQRES 14 B 264 ALA GLY ASN GLY LEU GLN LEU GLN LEU THR LYS LYS ASN SEQRES 15 B 264 ASN ASP LEU VAL ILE VAL ARG PHE PHE GLY SER VAL SER SEQRES 16 B 264 ASN ILE GLN LYS GLY TRP ASN MET SER GLY THR TRP VAL SEQRES 17 B 264 ASP ARG PRO PHE ARG PRO ALA ALA VAL GLN SER LEU VAL SEQRES 18 B 264 GLY HIS PHE ALA GLY ARG ASP THR SER PHE HIS ILE ASP SEQRES 19 B 264 ILE ASN PRO ASN GLY SER ILE THR TRP TRP GLY ALA ASN SEQRES 20 B 264 ILE ASP LYS THR PRO ILE ALA THR ARG GLY ASN GLY SER SEQRES 21 B 264 TYR PHE ILE LYS SEQRES 1 C 264 MET THR ILE LYS ASN PHE THR PHE PHE SER PRO ASN SER SEQRES 2 C 264 THR GLU PHE PRO VAL GLY SER ASN ASN ASP GLY LYS LEU SEQRES 3 C 264 TYR MET MET LEU THR GLY MET ASP TYR ARG THR ILE ARG SEQRES 4 C 264 ARG LYS ASP TRP SER SER PRO LEU ASN THR ALA LEU ASN SEQRES 5 C 264 VAL GLN TYR THR ASN THR SER ILE ILE ALA GLY GLY ARG SEQRES 6 C 264 TYR PHE GLU LEU LEU ASN GLU THR VAL ALA LEU LYS GLY SEQRES 7 C 264 ASP SER VAL ASN TYR ILE HIS ALA ASN ILE ASP LEU THR SEQRES 8 C 264 GLN THR ALA ASN PRO VAL SER LEU SER ALA GLU THR ALA SEQRES 9 C 264 ASN ASN SER ASN GLY VAL ASP ILE ASN ASN GLY SER GLY SEQRES 10 C 264 VAL LEU LYS VAL CYS PHE ASP ILE VAL THR THR SER GLY SEQRES 11 C 264 THR GLY VAL THR SER THR LYS PRO ILE VAL GLN THR SER SEQRES 12 C 264 THR LEU ASP SER ILE SER VAL ASN ASP MET THR VAL SER SEQRES 13 C 264 GLY SER ILE ASP VAL PRO VAL GLN THR LEU THR VAL GLU SEQRES 14 C 264 ALA GLY ASN GLY LEU GLN LEU GLN LEU THR LYS LYS ASN SEQRES 15 C 264 ASN ASP LEU VAL ILE VAL ARG PHE PHE GLY SER VAL SER SEQRES 16 C 264 ASN ILE GLN LYS GLY TRP ASN MET SER GLY THR TRP VAL SEQRES 17 C 264 ASP ARG PRO PHE ARG PRO ALA ALA VAL GLN SER LEU VAL SEQRES 18 C 264 GLY HIS PHE ALA GLY ARG ASP THR SER PHE HIS ILE ASP SEQRES 19 C 264 ILE ASN PRO ASN GLY SER ILE THR TRP TRP GLY ALA ASN SEQRES 20 C 264 ILE ASP LYS THR PRO ILE ALA THR ARG GLY ASN GLY SER SEQRES 21 C 264 TYR PHE ILE LYS HET GOL A2001 6 HET GOL A2004 6 HET GOL B2002 6 HET GOL B2006 6 HET GOL C2003 6 HET GOL C2005 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 6(C3 H8 O3) FORMUL 10 HOH *1144(H2 O) HELIX 1 1 GLY A 19 GLY A 32 1 14 HELIX 2 2 ASP A 209 ARG A 213 5 5 HELIX 3 3 SER B 20 GLY B 32 1 13 HELIX 4 4 ASP B 209 ARG B 213 5 5 HELIX 5 5 GLY C 19 GLY C 32 1 14 HELIX 6 6 ASP C 209 ARG C 213 5 5 SHEET 1 A 4 ILE A 3 ASN A 5 0 SHEET 2 A 4 ARG A 65 ALA A 75 -1 O GLU A 68 N LYS A 4 SHEET 3 A 4 ASN A 52 ALA A 62 -1 N THR A 58 O LEU A 69 SHEET 4 A 4 ARG A 39 SER A 44 -1 N ARG A 39 O ILE A 61 SHEET 1 B 4 ILE A 3 ASN A 5 0 SHEET 2 B 4 ARG A 65 ALA A 75 -1 O GLU A 68 N LYS A 4 SHEET 3 B 4 ASN A 52 ALA A 62 -1 N THR A 58 O LEU A 69 SHEET 4 B 4 LEU A 47 ASN A 48 -1 N LEU A 47 O GLN A 54 SHEET 1 C 4 VAL A 97 GLU A 102 0 SHEET 2 C 4 VAL A 81 ILE A 88 -1 N TYR A 83 O GLU A 102 SHEET 3 C 4 LEU A 119 THR A 128 -1 O VAL A 126 N ASN A 82 SHEET 4 C 4 VAL A 133 PRO A 138 -1 O THR A 134 N THR A 127 SHEET 1 D 4 THR A 142 THR A 144 0 SHEET 2 D 4 SER C 147 VAL C 150 1 O SER C 147 N SER A 143 SHEET 3 D 4 ASP B 152 VAL B 155 1 N THR B 154 O VAL C 150 SHEET 4 D 4 ILE A 159 ASP A 160 1 N ASP A 160 O MET B 153 SHEET 1 E 4 THR B 142 THR B 144 0 SHEET 2 E 4 SER A 147 VAL A 150 1 N SER A 147 O SER B 143 SHEET 3 E 4 ASP C 152 VAL C 155 1 O THR C 154 N ILE A 148 SHEET 4 E 4 ILE B 159 ASP B 160 1 N ASP B 160 O MET C 153 SHEET 1 F 4 THR C 142 THR C 144 0 SHEET 2 F 4 SER B 147 VAL B 150 1 N SER B 147 O SER C 143 SHEET 3 F 4 ASP A 152 VAL A 155 1 N THR A 154 O VAL B 150 SHEET 4 F 4 ILE C 159 ASP C 160 1 O ASP C 160 N MET A 153 SHEET 1 G 7 VAL A 163 GLY A 171 0 SHEET 2 G 7 LEU A 174 LYS A 181 -1 O LEU A 178 N LEU A 166 SHEET 3 G 7 LEU A 185 VAL A 194 -1 O PHE A 191 N GLN A 175 SHEET 4 G 7 ILE A 253 PHE A 262 -1 O GLY A 259 N VAL A 188 SHEET 5 G 7 GLN A 218 PHE A 224 -1 N HIS A 223 O ARG A 256 SHEET 6 G 7 SER A 230 ILE A 235 -1 O ILE A 233 N LEU A 220 SHEET 7 G 7 ILE A 241 TRP A 243 -1 O THR A 242 N ASP A 234 SHEET 1 H 4 ILE B 3 LYS B 4 0 SHEET 2 H 4 ARG B 65 ALA B 75 -1 O GLU B 68 N LYS B 4 SHEET 3 H 4 ASN B 52 ALA B 62 -1 N THR B 58 O LEU B 69 SHEET 4 H 4 ARG B 39 SER B 44 -1 N ARG B 39 O ILE B 61 SHEET 1 I 4 ILE B 3 LYS B 4 0 SHEET 2 I 4 ARG B 65 ALA B 75 -1 O GLU B 68 N LYS B 4 SHEET 3 I 4 ASN B 52 ALA B 62 -1 N THR B 58 O LEU B 69 SHEET 4 I 4 LEU B 47 ASN B 48 -1 N LEU B 47 O GLN B 54 SHEET 1 J 4 VAL B 97 GLU B 102 0 SHEET 2 J 4 VAL B 81 ILE B 88 -1 N TYR B 83 O GLU B 102 SHEET 3 J 4 LEU B 119 THR B 128 -1 O VAL B 126 N ASN B 82 SHEET 4 J 4 VAL B 133 PRO B 138 -1 O THR B 134 N THR B 127 SHEET 1 K 7 VAL B 163 GLY B 171 0 SHEET 2 K 7 LEU B 174 LYS B 181 -1 O LEU B 178 N LEU B 166 SHEET 3 K 7 LEU B 185 VAL B 194 -1 O PHE B 191 N GLN B 175 SHEET 4 K 7 ILE B 253 PHE B 262 -1 O GLY B 259 N VAL B 188 SHEET 5 K 7 GLN B 218 PHE B 224 -1 N HIS B 223 O ARG B 256 SHEET 6 K 7 SER B 230 ILE B 235 -1 O ILE B 233 N LEU B 220 SHEET 7 K 7 ILE B 241 TRP B 243 -1 O THR B 242 N ASP B 234 SHEET 1 L 4 ILE C 3 ASN C 5 0 SHEET 2 L 4 ARG C 65 ALA C 75 -1 O GLU C 68 N LYS C 4 SHEET 3 L 4 ASN C 52 ALA C 62 -1 N THR C 58 O LEU C 69 SHEET 4 L 4 ARG C 39 SER C 44 -1 N ARG C 39 O ILE C 61 SHEET 1 M 4 ILE C 3 ASN C 5 0 SHEET 2 M 4 ARG C 65 ALA C 75 -1 O GLU C 68 N LYS C 4 SHEET 3 M 4 ASN C 52 ALA C 62 -1 N THR C 58 O LEU C 69 SHEET 4 M 4 LEU C 47 ASN C 48 -1 N LEU C 47 O GLN C 54 SHEET 1 N 4 VAL C 97 GLU C 102 0 SHEET 2 N 4 VAL C 81 ILE C 88 -1 N TYR C 83 O GLU C 102 SHEET 3 N 4 LEU C 119 THR C 128 -1 O VAL C 126 N ASN C 82 SHEET 4 N 4 VAL C 133 PRO C 138 -1 O LYS C 137 N ILE C 125 SHEET 1 O 7 VAL C 163 GLY C 171 0 SHEET 2 O 7 LEU C 174 LYS C 181 -1 O LEU C 178 N LEU C 166 SHEET 3 O 7 LEU C 185 VAL C 194 -1 O LEU C 185 N LYS C 181 SHEET 4 O 7 ILE C 253 PHE C 262 -1 O GLY C 259 N VAL C 188 SHEET 5 O 7 GLN C 218 PHE C 224 -1 N HIS C 223 O ARG C 256 SHEET 6 O 7 SER C 230 ILE C 235 -1 O ILE C 233 N LEU C 220 SHEET 7 O 7 ILE C 241 TRP C 243 -1 O THR C 242 N ASP C 234 SITE 1 AC1 8 SER A 219 HIS A 232 ASP A 234 TRP A 244 SITE 2 AC1 8 HOH A2095 HOH A2255 THR B 131 ARG B 256 SITE 1 AC2 10 SER B 219 HIS B 232 ASP B 234 TRP B 244 SITE 2 AC2 10 HOH B2091 HOH B2109 HOH B2140 ASN C 48 SITE 3 AC2 10 THR C 49 ARG C 256 SITE 1 AC3 10 ARG A 256 HOH A2025 HOH A2289 SER C 219 SITE 2 AC3 10 HIS C 232 ASP C 234 TRP C 244 HOH C2062 SITE 3 AC3 10 HOH C2104 HOH C2165 SITE 1 AC4 7 MET A 29 GLY A 32 MET A 33 HOH A2086 SITE 2 AC4 7 HOH A2202 HOH A2365 HOH B2115 SITE 1 AC5 8 TRP A 43 GLY C 32 MET C 33 THR C 144 SITE 2 AC5 8 HOH C2155 HOH C2186 HOH C2219 HOH C2360 SITE 1 AC6 8 GLY B 32 MET B 33 THR B 144 HOH B2103 SITE 2 AC6 8 HOH B2119 HOH B2173 HOH B2252 TRP C 43 CRYST1 81.106 92.057 145.725 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006862 0.00000