HEADER TRANSFERASE 26-MAY-05 1ZTF TITLE CRYSTAL STRUCTURE OF A.FULGIDUS RIO1 SERINE PROTEIN KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIO1 SERINE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: RIO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEIN KINASE, RIBOSOME BIOGENESIS, RRNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WLODAWER,N.LARONDE-LEBLANC REVDAT 3 11-OCT-17 1ZTF 1 REMARK REVDAT 2 24-FEB-09 1ZTF 1 VERSN REVDAT 1 19-JUL-05 1ZTF 0 JRNL AUTH N.LARONDE-LEBLANC,T.GUSZCZYNSKI,T.COPELAND,A.WLODAWER JRNL TITL STRUCTURE AND ACTIVITY OF THE ATYPICAL SERINE KINASE RIO1. JRNL REF FEBS J. V. 272 3698 2005 JRNL REFN ISSN 1742-464X JRNL PMID 16008568 JRNL DOI 10.1111/J.1742-4658.2005.04796.X REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.150 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2103 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1934 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2829 ; 2.096 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4500 ; 0.885 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 9.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;39.484 ;24.343 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;19.898 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.441 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.163 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2300 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 516 ; 0.268 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1958 ; 0.254 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1047 ; 0.206 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1210 ; 0.103 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 264 ; 0.254 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.117 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.291 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.274 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.276 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1318 ; 8.145 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 517 ; 2.657 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2017 ; 9.218 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 938 ;10.671 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 812 ;13.056 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000033097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794, 0.9795, 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18215 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MES, AMMONUIM SULFATE, PH REMARK 280 6.3, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.35050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 THR A 86 OG1 CG2 REMARK 470 SER A 87 OG REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 PHE A 89 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 51 SE MSE A 51 CE -0.431 REMARK 500 VAL A 79 CB VAL A 79 CG2 0.133 REMARK 500 VAL A 208 CB VAL A 208 CG2 -0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 LEU A 145 CB - CG - CD1 ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 1.42 -68.08 REMARK 500 GLU A 85 104.13 -48.58 REMARK 500 GLU A 88 69.96 35.62 REMARK 500 PHE A 89 55.15 35.61 REMARK 500 ASP A 90 142.33 -39.88 REMARK 500 ARG A 105 -6.01 -54.07 REMARK 500 TYR A 138 -67.89 -102.91 REMARK 500 LYS A 142 -130.76 61.96 REMARK 500 ASP A 171 67.15 84.87 REMARK 500 ASP A 196 68.12 -161.45 REMARK 500 ILE A 205 -73.23 -117.53 REMARK 500 GLN A 215 36.37 -92.07 REMARK 500 LYS A 241 -16.16 -48.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 87 GLU A 88 85.02 REMARK 500 GLU A 88 PHE A 89 145.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XYA A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZP9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A.FULGIDUS RIO1 BOUND TO ATP AND MANGANESE ION. DBREF 1ZTF A 1 258 GB 11499392 NP_070631 1 258 SEQADV 1ZTF MSE A 1 GB 11499392 MET 1 MODIFIED RESIDUE SEQADV 1ZTF MSE A 51 GB 11499392 MET 51 MODIFIED RESIDUE SEQADV 1ZTF MSE A 77 GB 11499392 MET 77 MODIFIED RESIDUE SEQADV 1ZTF MSE A 92 GB 11499392 MET 92 MODIFIED RESIDUE SEQADV 1ZTF MSE A 104 GB 11499392 MET 104 MODIFIED RESIDUE SEQADV 1ZTF MSE A 141 GB 11499392 MET 141 MODIFIED RESIDUE SEQADV 1ZTF MSE A 147 GB 11499392 MET 147 MODIFIED RESIDUE SEQADV 1ZTF MSE A 203 GB 11499392 MET 203 MODIFIED RESIDUE SEQADV 1ZTF MSE A 213 GB 11499392 MET 213 MODIFIED RESIDUE SEQADV 1ZTF MSE A 223 GB 11499392 MET 223 MODIFIED RESIDUE SEQADV 1ZTF MSE A 251 GB 11499392 MET 251 MODIFIED RESIDUE SEQRES 1 A 258 MSE LYS ASP LEU LYS LYS ILE GLU SER TYR LEU ASP LYS SEQRES 2 A 258 LEU ARG ILE LYS GLU LYS ASP GLY GLU GLU ARG LYS ILE SEQRES 3 A 258 TYR ALA GLU VAL LEU ASP GLY ARG THR LEU LYS THR LEU SEQRES 4 A 258 TYR LYS LEU SER ALA LYS GLY TYR ILE THR ALA MSE GLY SEQRES 5 A 258 GLY VAL ILE SER THR GLY LYS GLU ALA ASN VAL PHE TYR SEQRES 6 A 258 ALA ASP GLY VAL PHE ASP GLY LYS PRO VAL ALA MSE ALA SEQRES 7 A 258 VAL LYS ILE TYR ARG ILE GLU THR SER GLU PHE ASP LYS SEQRES 8 A 258 MSE ASP GLU TYR LEU TYR GLY ASP GLU ARG PHE ASP MSE SEQRES 9 A 258 ARG ARG ILE SER PRO LYS GLU LYS VAL PHE ILE TRP THR SEQRES 10 A 258 GLU LYS GLU PHE ARG ASN LEU GLU ARG ALA LYS GLU ALA SEQRES 11 A 258 GLY VAL SER VAL PRO GLN PRO TYR THR TYR MSE LYS ASN SEQRES 12 A 258 VAL LEU LEU MSE GLU PHE ILE GLY GLU ASP GLU LEU PRO SEQRES 13 A 258 ALA PRO THR LEU VAL GLU LEU GLY ARG GLU LEU LYS GLU SEQRES 14 A 258 LEU ASP VAL GLU GLY ILE PHE ASN ASP VAL VAL GLU ASN SEQRES 15 A 258 VAL LYS ARG LEU TYR GLN GLU ALA GLU LEU VAL HIS ALA SEQRES 16 A 258 ASP LEU SER GLU TYR ASN ILE MSE TYR ILE ASP LYS VAL SEQRES 17 A 258 TYR PHE ILE ASP MSE GLY GLN ALA VAL THR LEU ARG HIS SEQRES 18 A 258 PRO MSE ALA GLU SER TYR LEU GLU ARG ASP VAL ARG ASN SEQRES 19 A 258 ILE ILE ARG PHE PHE SER LYS TYR GLY VAL LYS ALA ASP SEQRES 20 A 258 PHE GLU GLU MSE LEU LYS GLU VAL LYS GLY GLU MODRES 1ZTF MSE A 51 MET SELENOMETHIONINE MODRES 1ZTF MSE A 77 MET SELENOMETHIONINE MODRES 1ZTF MSE A 92 MET SELENOMETHIONINE MODRES 1ZTF MSE A 104 MET SELENOMETHIONINE MODRES 1ZTF MSE A 141 MET SELENOMETHIONINE MODRES 1ZTF MSE A 147 MET SELENOMETHIONINE MODRES 1ZTF MSE A 203 MET SELENOMETHIONINE MODRES 1ZTF MSE A 213 MET SELENOMETHIONINE MODRES 1ZTF MSE A 223 MET SELENOMETHIONINE MODRES 1ZTF MSE A 251 MET SELENOMETHIONINE HET MSE A 51 8 HET MSE A 77 8 HET MSE A 92 8 HET MSE A 104 8 HET MSE A 141 8 HET MSE A 147 8 HET MSE A 203 8 HET MSE A 213 8 HET MSE A 223 8 HET MSE A 251 8 HET XYA A 300 19 HETNAM MSE SELENOMETHIONINE HETNAM XYA 2-(6-AMINO-OCTAHYDRO-PURIN-9-YL)-5-HYDROXYMETHYL- HETNAM 2 XYA TETRAHYDRO-FURAN-3,4-DIOL HETSYN XYA 9-BETA-D-XYLOFURANOSYL-ADENINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 XYA C10 H13 N5 O4 FORMUL 3 HOH *249(H2 O) HELIX 1 1 TYR A 10 LEU A 14 5 5 HELIX 2 2 ASP A 20 LEU A 31 1 12 HELIX 3 3 ASP A 32 LYS A 45 1 14 HELIX 4 4 ASP A 90 LEU A 96 1 7 HELIX 5 5 ASP A 103 ILE A 107 5 5 HELIX 6 6 SER A 108 LYS A 110 5 3 HELIX 7 7 GLU A 111 ALA A 130 1 20 HELIX 8 8 THR A 159 GLY A 164 1 6 HELIX 9 9 ARG A 165 LEU A 170 5 6 HELIX 10 10 ASP A 171 GLU A 189 1 19 HELIX 11 11 ASP A 212 GLY A 214 5 3 HELIX 12 12 MSE A 223 LYS A 241 1 19 HELIX 13 13 ASP A 247 GLY A 257 1 11 SHEET 1 A 5 ILE A 48 SER A 56 0 SHEET 2 A 5 ALA A 61 PHE A 70 -1 O VAL A 63 N SER A 56 SHEET 3 A 5 LYS A 73 TYR A 82 -1 O ILE A 81 N ASN A 62 SHEET 4 A 5 VAL A 144 GLU A 148 -1 O MSE A 147 N ALA A 78 SHEET 5 A 5 PRO A 137 MSE A 141 -1 N THR A 139 O LEU A 146 SHEET 1 B 2 GLY A 151 GLU A 152 0 SHEET 2 B 2 LEU A 155 PRO A 156 -1 O LEU A 155 N GLU A 152 SHEET 1 C 2 LEU A 192 HIS A 194 0 SHEET 2 C 2 ALA A 216 THR A 218 -1 O VAL A 217 N VAL A 193 SHEET 1 D 2 ILE A 202 TYR A 204 0 SHEET 2 D 2 VAL A 208 PHE A 210 -1 O TYR A 209 N MSE A 203 LINK C ALA A 50 N MSE A 51 1555 1555 1.32 LINK C MSE A 51 N GLY A 52 1555 1555 1.33 LINK C ALA A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N ALA A 78 1555 1555 1.34 LINK C LYS A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N ASP A 93 1555 1555 1.31 LINK C ASP A 103 N MSE A 104 1555 1555 1.32 LINK C MSE A 104 N ARG A 105 1555 1555 1.34 LINK C TYR A 140 N MSE A 141 1555 1555 1.34 LINK C MSE A 141 N LYS A 142 1555 1555 1.32 LINK C LEU A 146 N MSE A 147 1555 1555 1.32 LINK C MSE A 147 N GLU A 148 1555 1555 1.33 LINK C ILE A 202 N MSE A 203 1555 1555 1.34 LINK C MSE A 203 N TYR A 204 1555 1555 1.35 LINK C ASP A 212 N MSE A 213 1555 1555 1.31 LINK C MSE A 213 N GLY A 214 1555 1555 1.30 LINK C PRO A 222 N MSE A 223 1555 1555 1.32 LINK C MSE A 223 N ALA A 224 1555 1555 1.32 LINK C GLU A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N LEU A 252 1555 1555 1.31 SITE 1 AC1 11 ILE A 55 SER A 56 PRO A 135 GLU A 148 SITE 2 AC1 11 PHE A 149 ILE A 150 MSE A 203 ILE A 211 SITE 3 AC1 11 HOH A 309 HOH A 332 HOH A 410 CRYST1 42.987 52.701 63.779 90.00 108.89 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023263 0.000000 0.007960 0.00000 SCALE2 0.000000 0.018975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016572 0.00000