HEADER DNA BINDING PROTEIN 31-MAY-05 1ZUJ TITLE THE CRYSTAL STRUCTURE OF THE LACTOCOCCUS LACTIS MG1363 DPSA PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN LLACC01001955; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 1358; SOURCE 4 STRAIN: MG1363; SOURCE 5 GENE: FLPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OXIDATIVE STRESS, DPS, DNA BINDING, LACTIC ACID BACTERIA, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.J.STILLMAN,M.UPADHYAY,V.A.NORTE,S.E.SEDELNIKOVA,M.CARRADUS, AUTHOR 2 S.TZOKOV,P.A.BULLOUGH,C.A.SHEARMAN,M.J.GASSON,C.H.WILLIAMS, AUTHOR 3 P.J.ARTYMIUK,J.GREEN REVDAT 4 23-AUG-23 1ZUJ 1 REMARK REVDAT 3 13-JUL-11 1ZUJ 1 VERSN REVDAT 2 24-FEB-09 1ZUJ 1 VERSN REVDAT 1 30-AUG-05 1ZUJ 0 JRNL AUTH T.J.STILLMAN,M.UPADHYAY,V.A.NORTE,S.E.SEDELNIKOVA, JRNL AUTH 2 M.CARRADUS,S.TZOKOV,P.A.BULLOUGH,C.A.SHEARMAN,M.J.GASSON, JRNL AUTH 3 C.H.WILLIAMS,P.J.ARTYMIUK,J.GREEN JRNL TITL THE CRYSTAL STRUCTURES OF LACTOCOCCUS LACTIS MG1363 DPS JRNL TITL 2 PROTEINS REVEAL THE PRESENCE OF AN N-TERMINAL HELIX THAT IS JRNL TITL 3 REQUIRED FOR DNA BINDING. JRNL REF MOL.MICROBIOL. V. 57 1101 2005 JRNL REFN ISSN 0950-382X JRNL PMID 16091047 JRNL DOI 10.1111/J.1365-2958.2005.04757.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.O.GOSTICK,H.G.GRIFFIN,C.A.SHEARMAN,C.SCOTT,J.GREEN, REMARK 1 AUTH 2 M.J.GASSON,J.R.GUEST REMARK 1 TITL TWO OPERONS THAT ENCODE FNR-LIKE PROTEINS IN LACTOCOCCUS REMARK 1 TITL 2 LACTIS REMARK 1 REF MOL.MICROBIOL. V. 31 1523 1999 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 10200970 REMARK 1 DOI 10.1046/J.1365-2958.1999.01298.X REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 20210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.35000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.524 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.393 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5668 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5040 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7636 ; 1.566 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11812 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ;10.114 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 816 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6232 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1152 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1644 ; 0.253 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6294 ; 0.231 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3524 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.277 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 89 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.021 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3344 ; 0.504 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5376 ; 0.973 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2324 ; 1.224 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2260 ; 2.173 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-01; 05-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 298; 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SRS; SRS REMARK 200 BEAMLINE : PX14.1; PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488; 1.488 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111); REMARK 200 SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22949 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 1ZS3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M AMMONIUM SULPHATE, 0.1M HEPES/NA, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 65.92000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.05893 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 108.56667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 65.92000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.05893 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 108.56667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 65.92000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.05893 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.56667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 65.92000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.05893 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.56667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 65.92000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.05893 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.56667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 65.92000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.05893 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 108.56667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.11786 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 217.13333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 76.11786 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 217.13333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 76.11786 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 217.13333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 76.11786 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 217.13333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 76.11786 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 217.13333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 76.11786 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 217.13333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DODECAMER GENERATED FROM THE REMARK 300 TETRAMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: 2-Y, X-Y, Z AND REMARK 300 2-X+Y, 2-X, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 38500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -180.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 263.68000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 131.84000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 228.35358 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ILE A 3 REMARK 465 GLU A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 174 REMARK 465 GLU A 175 REMARK 465 GLU A 176 REMARK 465 GLU A 177 REMARK 465 ASP A 178 REMARK 465 GLU A 179 REMARK 465 ASP A 180 REMARK 465 MET B 2 REMARK 465 ILE B 3 REMARK 465 GLU B 4 REMARK 465 LEU B 5 REMARK 465 ILE B 174 REMARK 465 GLU B 175 REMARK 465 GLU B 176 REMARK 465 GLU B 177 REMARK 465 ASP B 178 REMARK 465 GLU B 179 REMARK 465 ASP B 180 REMARK 465 MET C 2 REMARK 465 ILE C 3 REMARK 465 GLU C 4 REMARK 465 LEU C 5 REMARK 465 ILE C 174 REMARK 465 GLU C 175 REMARK 465 GLU C 176 REMARK 465 GLU C 177 REMARK 465 ASP C 178 REMARK 465 GLU C 179 REMARK 465 ASP C 180 REMARK 465 MET D 2 REMARK 465 ILE D 3 REMARK 465 GLU D 4 REMARK 465 LEU D 5 REMARK 465 ILE D 174 REMARK 465 GLU D 175 REMARK 465 GLU D 176 REMARK 465 GLU D 177 REMARK 465 ASP D 178 REMARK 465 GLU D 179 REMARK 465 ASP D 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 156 CD PRO C 160 2.15 REMARK 500 NZ LYS C 107 OE2 GLU D 14 2.15 REMARK 500 OE2 GLU A 14 OH TYR B 108 2.15 REMARK 500 OG1 THR D 89 OE2 GLU D 92 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 21 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 121 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP D 91 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 22 32.56 -76.23 REMARK 500 HIS A 23 -68.83 -145.04 REMARK 500 MET A 46 -33.49 -33.10 REMARK 500 ASP A 69 7.78 -63.50 REMARK 500 LEU A 79 -71.25 -82.91 REMARK 500 LEU A 80 -43.60 -29.93 REMARK 500 ASN A 83 78.14 0.72 REMARK 500 PRO A 87 154.93 -47.69 REMARK 500 THR A 88 -22.04 -159.59 REMARK 500 PHE A 99 -12.80 75.20 REMARK 500 ASP A 103 120.28 -170.92 REMARK 500 ALA A 132 -38.36 -23.17 REMARK 500 ILE A 133 -50.86 -156.31 REMARK 500 GLU A 172 -91.65 -81.42 REMARK 500 PRO B 25 110.62 -27.12 REMARK 500 LYS B 53 -56.61 -120.10 REMARK 500 THR B 88 37.47 -154.16 REMARK 500 LYS B 98 105.86 -179.49 REMARK 500 PHE B 99 9.13 95.84 REMARK 500 ASN B 102 -155.36 -71.23 REMARK 500 ASP B 103 91.85 160.93 REMARK 500 ALA B 106 -14.48 -48.49 REMARK 500 GLU B 112 -46.77 -25.99 REMARK 500 ASP B 121 13.50 -66.00 REMARK 500 ALA B 132 -68.63 -104.57 REMARK 500 ILE B 133 -71.62 69.99 REMARK 500 LYS B 141 47.86 -109.95 REMARK 500 PHE B 142 -53.31 -26.02 REMARK 500 ILE C 7 -78.92 -112.72 REMARK 500 ALA C 52 165.12 -43.89 REMARK 500 LEU C 74 -71.90 -56.85 REMARK 500 GLU C 77 -72.10 -71.34 REMARK 500 GLN C 78 -41.50 -25.78 REMARK 500 GLU C 82 46.90 -102.41 REMARK 500 ASN C 83 63.81 18.49 REMARK 500 THR C 88 3.58 -156.51 REMARK 500 LEU C 90 -38.34 -39.99 REMARK 500 ASP C 103 111.24 -162.58 REMARK 500 TRP C 109 -178.84 -65.25 REMARK 500 ILE C 133 -88.41 10.54 REMARK 500 LEU C 146 -54.16 -29.41 REMARK 500 ILE D 7 -45.79 -27.94 REMARK 500 LYS D 98 107.97 -168.19 REMARK 500 PHE D 99 -2.39 68.73 REMARK 500 ILE D 133 -58.61 13.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 132 ILE A 133 -83.36 REMARK 500 ALA B 132 ILE B 133 49.03 REMARK 500 LYS C 24 PRO C 25 -140.39 REMARK 500 ARG C 131 ALA C 132 -149.34 REMARK 500 ALA C 132 ILE C 133 76.59 REMARK 500 LYS D 24 PRO D 25 -135.06 REMARK 500 ALA D 132 ILE D 133 109.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZS3 RELATED DB: PDB REMARK 900 THE LACTOCOCCUS LACTIS MG1363 DPSB PROTEIN DBREF 1ZUJ A 2 180 PDB 1ZUJ 1ZUJ 2 180 DBREF 1ZUJ B 2 180 PDB 1ZUJ 1ZUJ 2 180 DBREF 1ZUJ C 2 180 PDB 1ZUJ 1ZUJ 2 180 DBREF 1ZUJ D 2 180 PDB 1ZUJ 1ZUJ 2 180 SEQRES 1 A 179 MET ILE GLU LEU SER ILE ASP GLU LYS TYR GLU ALA GLU SEQRES 2 A 179 VAL LYS LYS SER GLU ILE ASP HIS HIS LYS PRO THR ALA SEQRES 3 A 179 GLY ALA MET LEU SER HIS VAL LEU SER ASN ILE PHE TYR SEQRES 4 A 179 GLU LYS ILE SER LEU MET GLN ALA GLY LEU TYR ALA LYS SEQRES 5 A 179 SER ALA ASN TYR ARG ILE LYS PHE ARG GLU ILE ALA LEU SEQRES 6 A 179 LYS GLU ASP GLU TRP PHE TYR LEU ILE SER GLU GLN LEU SEQRES 7 A 179 LEU ASP GLU ASN GLU LEU VAL PRO THR THR LEU ASP GLU SEQRES 8 A 179 PHE VAL SER ASN HIS LYS PHE ILE GLU ASN ASP PRO LYS SEQRES 9 A 179 ALA LYS TYR TRP THR ASP GLU ALA LEU ILE GLU ASN PHE SEQRES 10 A 179 ILE ASN ASP PHE GLN ASN GLN ASN LEU PHE ILE GLY ARG SEQRES 11 A 179 ALA ILE LYS LEU ALA GLN LYS GLU GLU LYS PHE SER LEU SEQRES 12 A 179 GLU LEU ALA ILE ARG LYS LEU TYR GLY TYR ASN LEU SER SEQRES 13 A 179 ILE ILE PRO TYR PHE ALA GLY GLU LEU GLY LYS THR ILE SEQRES 14 A 179 GLY GLU PHE ILE GLU GLU GLU ASP GLU ASP SEQRES 1 B 179 MET ILE GLU LEU SER ILE ASP GLU LYS TYR GLU ALA GLU SEQRES 2 B 179 VAL LYS LYS SER GLU ILE ASP HIS HIS LYS PRO THR ALA SEQRES 3 B 179 GLY ALA MET LEU SER HIS VAL LEU SER ASN ILE PHE TYR SEQRES 4 B 179 GLU LYS ILE SER LEU MET GLN ALA GLY LEU TYR ALA LYS SEQRES 5 B 179 SER ALA ASN TYR ARG ILE LYS PHE ARG GLU ILE ALA LEU SEQRES 6 B 179 LYS GLU ASP GLU TRP PHE TYR LEU ILE SER GLU GLN LEU SEQRES 7 B 179 LEU ASP GLU ASN GLU LEU VAL PRO THR THR LEU ASP GLU SEQRES 8 B 179 PHE VAL SER ASN HIS LYS PHE ILE GLU ASN ASP PRO LYS SEQRES 9 B 179 ALA LYS TYR TRP THR ASP GLU ALA LEU ILE GLU ASN PHE SEQRES 10 B 179 ILE ASN ASP PHE GLN ASN GLN ASN LEU PHE ILE GLY ARG SEQRES 11 B 179 ALA ILE LYS LEU ALA GLN LYS GLU GLU LYS PHE SER LEU SEQRES 12 B 179 GLU LEU ALA ILE ARG LYS LEU TYR GLY TYR ASN LEU SER SEQRES 13 B 179 ILE ILE PRO TYR PHE ALA GLY GLU LEU GLY LYS THR ILE SEQRES 14 B 179 GLY GLU PHE ILE GLU GLU GLU ASP GLU ASP SEQRES 1 C 179 MET ILE GLU LEU SER ILE ASP GLU LYS TYR GLU ALA GLU SEQRES 2 C 179 VAL LYS LYS SER GLU ILE ASP HIS HIS LYS PRO THR ALA SEQRES 3 C 179 GLY ALA MET LEU SER HIS VAL LEU SER ASN ILE PHE TYR SEQRES 4 C 179 GLU LYS ILE SER LEU MET GLN ALA GLY LEU TYR ALA LYS SEQRES 5 C 179 SER ALA ASN TYR ARG ILE LYS PHE ARG GLU ILE ALA LEU SEQRES 6 C 179 LYS GLU ASP GLU TRP PHE TYR LEU ILE SER GLU GLN LEU SEQRES 7 C 179 LEU ASP GLU ASN GLU LEU VAL PRO THR THR LEU ASP GLU SEQRES 8 C 179 PHE VAL SER ASN HIS LYS PHE ILE GLU ASN ASP PRO LYS SEQRES 9 C 179 ALA LYS TYR TRP THR ASP GLU ALA LEU ILE GLU ASN PHE SEQRES 10 C 179 ILE ASN ASP PHE GLN ASN GLN ASN LEU PHE ILE GLY ARG SEQRES 11 C 179 ALA ILE LYS LEU ALA GLN LYS GLU GLU LYS PHE SER LEU SEQRES 12 C 179 GLU LEU ALA ILE ARG LYS LEU TYR GLY TYR ASN LEU SER SEQRES 13 C 179 ILE ILE PRO TYR PHE ALA GLY GLU LEU GLY LYS THR ILE SEQRES 14 C 179 GLY GLU PHE ILE GLU GLU GLU ASP GLU ASP SEQRES 1 D 179 MET ILE GLU LEU SER ILE ASP GLU LYS TYR GLU ALA GLU SEQRES 2 D 179 VAL LYS LYS SER GLU ILE ASP HIS HIS LYS PRO THR ALA SEQRES 3 D 179 GLY ALA MET LEU SER HIS VAL LEU SER ASN ILE PHE TYR SEQRES 4 D 179 GLU LYS ILE SER LEU MET GLN ALA GLY LEU TYR ALA LYS SEQRES 5 D 179 SER ALA ASN TYR ARG ILE LYS PHE ARG GLU ILE ALA LEU SEQRES 6 D 179 LYS GLU ASP GLU TRP PHE TYR LEU ILE SER GLU GLN LEU SEQRES 7 D 179 LEU ASP GLU ASN GLU LEU VAL PRO THR THR LEU ASP GLU SEQRES 8 D 179 PHE VAL SER ASN HIS LYS PHE ILE GLU ASN ASP PRO LYS SEQRES 9 D 179 ALA LYS TYR TRP THR ASP GLU ALA LEU ILE GLU ASN PHE SEQRES 10 D 179 ILE ASN ASP PHE GLN ASN GLN ASN LEU PHE ILE GLY ARG SEQRES 11 D 179 ALA ILE LYS LEU ALA GLN LYS GLU GLU LYS PHE SER LEU SEQRES 12 D 179 GLU LEU ALA ILE ARG LYS LEU TYR GLY TYR ASN LEU SER SEQRES 13 D 179 ILE ILE PRO TYR PHE ALA GLY GLU LEU GLY LYS THR ILE SEQRES 14 D 179 GLY GLU PHE ILE GLU GLU GLU ASP GLU ASP FORMUL 5 HOH *45(H2 O) HELIX 1 1 TYR A 11 HIS A 22 1 12 HELIX 2 2 THR A 26 ALA A 52 1 27 HELIX 3 3 SER A 54 GLU A 82 1 29 HELIX 4 4 THR A 89 HIS A 97 1 9 HELIX 5 5 LYS A 105 TRP A 109 5 5 HELIX 6 6 THR A 110 ILE A 133 1 24 HELIX 7 7 ILE A 133 GLU A 139 1 7 HELIX 8 8 LYS A 141 LEU A 166 1 26 HELIX 9 9 SER B 6 LYS B 24 1 19 HELIX 10 10 THR B 26 ALA B 52 1 27 HELIX 11 11 SER B 54 GLU B 82 1 29 HELIX 12 12 THR B 89 HIS B 97 1 9 HELIX 13 13 ASP B 103 TRP B 109 5 7 HELIX 14 14 THR B 110 ASN B 124 1 15 HELIX 15 15 GLN B 125 ARG B 131 1 7 HELIX 16 16 ILE B 133 GLU B 140 1 8 HELIX 17 17 LYS B 141 LEU B 166 1 26 HELIX 18 18 ASP C 8 LYS C 24 1 17 HELIX 19 19 THR C 26 ALA C 52 1 27 HELIX 20 20 SER C 54 GLU C 82 1 29 HELIX 21 21 THR C 89 ASN C 96 1 8 HELIX 22 22 THR C 110 GLU C 139 1 30 HELIX 23 23 LYS C 141 GLU C 165 1 25 HELIX 24 24 THR C 169 PHE C 173 5 5 HELIX 25 25 SER D 6 LYS D 24 1 19 HELIX 26 26 THR D 26 ALA D 52 1 27 HELIX 27 27 SER D 54 GLU D 82 1 29 HELIX 28 28 THR D 89 HIS D 97 1 9 HELIX 29 29 PRO D 104 TRP D 109 5 6 HELIX 30 30 THR D 110 GLU D 139 1 30 HELIX 31 31 LYS D 141 LEU D 166 1 26 HELIX 32 32 THR D 169 PHE D 173 5 5 CRYST1 131.840 131.840 325.700 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007585 0.004379 0.000000 0.00000 SCALE2 0.000000 0.008758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003070 0.00000