data_1ZV6 # _entry.id 1ZV6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZV6 pdb_00001zv6 10.2210/pdb1zv6/pdb RCSB RCSB033157 ? ? WWPDB D_1000033157 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1QZP 'NMR Structure Of The Human Dematin Headpiece Domain' unspecified PDB 1QQV 'NMR STRUCTURE OF THE HEADPIECE DOMAIN OF CHICKEN VILLIN' unspecified PDB 1VII 'NMR STRUCTURE OF THE THERMOSTABLE, 35-RESIDUE SUBDOMAIN FROM CHICKEN VILLIN HEADPIECE' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZV6 _pdbx_database_status.recvd_initial_deposition_date 2005-06-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jiang, Z.G.' 1 'McKnight, C.J.' 2 # _citation.id primary _citation.title 'A phosphorylation-induced conformation change in dematin headpiece.' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 379 _citation.page_last 387 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16472756 _citation.pdbx_database_id_DOI 10.1016/j.str.2005.11.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, Z.G.' 1 ? primary 'McKnight, C.J.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'EPB49 protein' _entity.formula_weight 7978.362 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 316-383' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code PGLQIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKAELF _entity_poly.pdbx_seq_one_letter_code_can PGLQIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKAELF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLY n 1 3 LEU n 1 4 GLN n 1 5 ILE n 1 6 TYR n 1 7 PRO n 1 8 TYR n 1 9 GLU n 1 10 MET n 1 11 LEU n 1 12 VAL n 1 13 VAL n 1 14 THR n 1 15 ASN n 1 16 LYS n 1 17 GLY n 1 18 ARG n 1 19 THR n 1 20 LYS n 1 21 LEU n 1 22 PRO n 1 23 PRO n 1 24 GLY n 1 25 VAL n 1 26 ASP n 1 27 ARG n 1 28 MET n 1 29 ARG n 1 30 LEU n 1 31 GLU n 1 32 ARG n 1 33 HIS n 1 34 LEU n 1 35 SER n 1 36 ALA n 1 37 GLU n 1 38 ASP n 1 39 PHE n 1 40 SER n 1 41 ARG n 1 42 VAL n 1 43 PHE n 1 44 ALA n 1 45 MET n 1 46 SER n 1 47 PRO n 1 48 GLU n 1 49 GLU n 1 50 PHE n 1 51 GLY n 1 52 LYS n 1 53 LEU n 1 54 ALA n 1 55 LEU n 1 56 TRP n 1 57 LYS n 1 58 ARG n 1 59 ASN n 1 60 GLU n 1 61 LEU n 1 62 LYS n 1 63 LYS n 1 64 LYS n 1 65 ALA n 1 66 GLU n 1 67 LEU n 1 68 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PD48 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAH52805 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PGLQIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF _struct_ref.pdbx_align_begin 316 _struct_ref.pdbx_db_accession 31127246 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ZV6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 68 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 31127246 _struct_ref_seq.db_align_beg 316 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 383 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 76 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1ZV6 _struct_ref_seq_dif.mon_id GLU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 66 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name GB _struct_ref_seq_dif.pdbx_seq_db_accession_code 31127246 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 381 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 74 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 HNCA-J 1 3 1 HNCOCA 1 4 1 '2D NOESY' 1 5 1 3D_15N-separated_NOESY 1 6 1 HNHA 1 7 1 HNHB 1 8 1 '2D NOESY' 1 9 1 '2D TOCSY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10 mM PHOSPHATE' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1 MM DHPs74e U-15N,13C U-15N; 1 MM DHPs74e 10% 13C, U- 15N, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1ZV6 _pdbx_nmr_refine.method 'DISTANCE GEOMETRY/SIMULATED ANNEALING' _pdbx_nmr_refine.details ;THE STRUCTURES ARE BASED ON A TOTAL OF 1449 RESTRAINTS: 1289 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 142 ARE DIHEDRAL ANGLE RESTRAINTS, AND 18 ARE DISTANCE RESTRAINTS FROM HYDROGEN BONDS. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1ZV6 _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY. Model 1 represents minimized average structure.' # _pdbx_nmr_ensemble.entry_id 1ZV6 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 21 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1ZV6 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' MOLMOL 2K.2 KORADI 1 refinement CNS 1.0 Brunger 2 processing NMRPipe '2004 version' DELAGLIO 3 collection XwinNMR 3.1 . 4 'data analysis' NMRView 5.0.4. Johnson 5 # _exptl.entry_id 1ZV6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1ZV6 _struct.title 'NMR structure of the human dematin headpiece S74E mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1ZV6 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'dematin headpiece, actin binding domain, phosphorylation, PROTEIN BINDING' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 8 ? VAL A 12 ? TYR A 16 VAL A 20 5 ? 5 HELX_P HELX_P2 2 ASP A 26 ? MET A 28 ? ASP A 34 MET A 36 5 ? 3 HELX_P HELX_P3 3 ARG A 29 ? LEU A 34 ? ARG A 37 LEU A 42 1 ? 6 HELX_P HELX_P4 4 SER A 35 ? PHE A 43 ? SER A 43 PHE A 51 1 ? 9 HELX_P HELX_P5 5 SER A 46 ? LEU A 53 ? SER A 54 LEU A 61 1 ? 8 HELX_P HELX_P6 6 ALA A 54 ? ALA A 65 ? ALA A 62 ALA A 73 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1ZV6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ZV6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 9 9 PRO PRO A . n A 1 2 GLY 2 10 10 GLY GLY A . n A 1 3 LEU 3 11 11 LEU LEU A . n A 1 4 GLN 4 12 12 GLN GLN A . n A 1 5 ILE 5 13 13 ILE ILE A . n A 1 6 TYR 6 14 14 TYR TYR A . n A 1 7 PRO 7 15 15 PRO PRO A . n A 1 8 TYR 8 16 16 TYR TYR A . n A 1 9 GLU 9 17 17 GLU GLU A . n A 1 10 MET 10 18 18 MET MET A . n A 1 11 LEU 11 19 19 LEU LEU A . n A 1 12 VAL 12 20 20 VAL VAL A . n A 1 13 VAL 13 21 21 VAL VAL A . n A 1 14 THR 14 22 22 THR THR A . n A 1 15 ASN 15 23 23 ASN ASN A . n A 1 16 LYS 16 24 24 LYS LYS A . n A 1 17 GLY 17 25 25 GLY GLY A . n A 1 18 ARG 18 26 26 ARG ARG A . n A 1 19 THR 19 27 27 THR THR A . n A 1 20 LYS 20 28 28 LYS LYS A . n A 1 21 LEU 21 29 29 LEU LEU A . n A 1 22 PRO 22 30 30 PRO PRO A . n A 1 23 PRO 23 31 31 PRO PRO A . n A 1 24 GLY 24 32 32 GLY GLY A . n A 1 25 VAL 25 33 33 VAL VAL A . n A 1 26 ASP 26 34 34 ASP ASP A . n A 1 27 ARG 27 35 35 ARG ARG A . n A 1 28 MET 28 36 36 MET MET A . n A 1 29 ARG 29 37 37 ARG ARG A . n A 1 30 LEU 30 38 38 LEU LEU A . n A 1 31 GLU 31 39 39 GLU GLU A . n A 1 32 ARG 32 40 40 ARG ARG A . n A 1 33 HIS 33 41 41 HIS HIS A . n A 1 34 LEU 34 42 42 LEU LEU A . n A 1 35 SER 35 43 43 SER SER A . n A 1 36 ALA 36 44 44 ALA ALA A . n A 1 37 GLU 37 45 45 GLU GLU A . n A 1 38 ASP 38 46 46 ASP ASP A . n A 1 39 PHE 39 47 47 PHE PHE A . n A 1 40 SER 40 48 48 SER SER A . n A 1 41 ARG 41 49 49 ARG ARG A . n A 1 42 VAL 42 50 50 VAL VAL A . n A 1 43 PHE 43 51 51 PHE PHE A . n A 1 44 ALA 44 52 52 ALA ALA A . n A 1 45 MET 45 53 53 MET MET A . n A 1 46 SER 46 54 54 SER SER A . n A 1 47 PRO 47 55 55 PRO PRO A . n A 1 48 GLU 48 56 56 GLU GLU A . n A 1 49 GLU 49 57 57 GLU GLU A . n A 1 50 PHE 50 58 58 PHE PHE A . n A 1 51 GLY 51 59 59 GLY GLY A . n A 1 52 LYS 52 60 60 LYS LYS A . n A 1 53 LEU 53 61 61 LEU LEU A . n A 1 54 ALA 54 62 62 ALA ALA A . n A 1 55 LEU 55 63 63 LEU LEU A . n A 1 56 TRP 56 64 64 TRP TRP A . n A 1 57 LYS 57 65 65 LYS LYS A . n A 1 58 ARG 58 66 66 ARG ARG A . n A 1 59 ASN 59 67 67 ASN ASN A . n A 1 60 GLU 60 68 68 GLU GLU A . n A 1 61 LEU 61 69 69 LEU LEU A . n A 1 62 LYS 62 70 70 LYS LYS A . n A 1 63 LYS 63 71 71 LYS LYS A . n A 1 64 LYS 64 72 72 LYS LYS A . n A 1 65 ALA 65 73 73 ALA ALA A . n A 1 66 GLU 66 74 74 GLU GLU A . n A 1 67 LEU 67 75 75 LEU LEU A . n A 1 68 PHE 68 76 76 PHE PHE A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-21 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE DHPS74E CONSTRUCT SPANS RESIDUES 316 TO 383 OF THE 48 KDA FORM OF HUMAN DEMATIN, WITH SER74 REPLACED BY GLU. TO FACILITATE THE COMPARISON WITH OTHER HEADPIECE DOMAINS, WE USE THE NUMBERING SCHEME FROM VARDAR ET AL., 1999, J.MOLEC.BIOL., 294, 1299-1310, SUCH THAT THE N-TERMINAL PROLINE OF DHP IS RESIDUE 9, AND C-TERMINAL PHENYLALANINE IS RESIDUE 76. THE FINAL RESIDUE (F76) IS THE NATURAL C-TERMINAL RESIDUE OF DEMATIN. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 69 ? ? H A ALA 73 ? ? 1.56 2 2 O A LEU 69 ? ? H A ALA 73 ? ? 1.54 3 5 O A SER 54 ? ? H A GLU 57 ? ? 1.59 4 7 O A LEU 69 ? ? H A ALA 73 ? ? 1.58 5 8 O A ALA 62 ? ? H A ARG 66 ? ? 1.58 6 8 O A LEU 69 ? ? H A ALA 73 ? ? 1.59 7 9 O A LEU 69 ? ? H A ALA 73 ? ? 1.60 8 10 O A LEU 69 ? ? H A ALA 73 ? ? 1.56 9 10 O A SER 54 ? ? H A GLU 57 ? ? 1.59 10 15 O A LEU 69 ? ? H A ALA 73 ? ? 1.55 11 16 O A LEU 69 ? ? H A ALA 73 ? ? 1.52 12 18 O A LEU 69 ? ? H A ALA 73 ? ? 1.55 13 20 O A LEU 69 ? ? H A ALA 73 ? ? 1.48 14 20 O A THR 22 ? ? H A GLY 25 ? ? 1.59 15 20 O A PHE 58 ? ? H A LEU 61 ? ? 1.60 16 21 O A LEU 69 ? ? H A ALA 73 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 21 ? ? -92.42 -68.84 2 1 ARG A 26 ? ? -145.57 -72.87 3 1 LYS A 28 ? ? -73.68 26.67 4 1 PRO A 30 ? ? -57.82 -176.14 5 1 ARG A 37 ? ? -142.08 43.03 6 1 GLU A 39 ? ? -69.55 0.50 7 1 LEU A 61 ? ? -79.40 -141.94 8 2 PRO A 15 ? ? -47.95 166.60 9 2 VAL A 21 ? ? -102.03 -67.42 10 2 THR A 27 ? ? -50.70 -87.24 11 2 LYS A 28 ? ? 48.34 23.13 12 2 PRO A 30 ? ? -54.11 -170.62 13 2 ARG A 37 ? ? -141.03 36.73 14 2 LEU A 61 ? ? -79.94 -145.89 15 3 PRO A 15 ? ? -52.00 170.11 16 3 VAL A 21 ? ? -100.87 -66.67 17 3 THR A 22 ? ? -105.07 -64.83 18 3 ARG A 26 ? ? -149.91 -46.64 19 3 THR A 27 ? ? -163.85 20.62 20 3 LYS A 28 ? ? -70.41 26.69 21 3 PRO A 30 ? ? -60.34 -174.36 22 3 LEU A 61 ? ? -80.07 -145.11 23 4 PRO A 15 ? ? -46.67 166.94 24 4 VAL A 21 ? ? -102.13 -67.78 25 4 ARG A 26 ? ? -137.57 -158.00 26 4 LYS A 28 ? ? 39.55 25.48 27 4 PRO A 30 ? ? -56.00 -173.00 28 4 ARG A 37 ? ? -143.33 50.23 29 4 ALA A 52 ? ? 80.90 -3.02 30 4 LEU A 61 ? ? -84.84 -144.31 31 5 PRO A 15 ? ? -51.17 170.70 32 5 VAL A 21 ? ? -102.41 -67.63 33 5 ARG A 26 ? ? -138.23 -158.53 34 5 LYS A 28 ? ? 39.65 25.23 35 5 PRO A 30 ? ? -56.10 -171.36 36 5 ARG A 37 ? ? -145.82 44.43 37 5 ALA A 52 ? ? 90.32 -3.07 38 5 LEU A 61 ? ? -80.92 -141.60 39 6 PRO A 15 ? ? -51.06 170.92 40 6 VAL A 21 ? ? -102.40 -65.91 41 6 ARG A 26 ? ? -132.93 -53.33 42 6 THR A 27 ? ? -150.29 -57.17 43 6 LYS A 28 ? ? 41.88 23.22 44 6 PRO A 30 ? ? -55.38 -173.68 45 6 ARG A 37 ? ? -147.20 41.91 46 6 GLU A 39 ? ? -68.31 7.07 47 6 LEU A 61 ? ? -80.63 -141.51 48 7 VAL A 21 ? ? -102.19 -67.62 49 7 THR A 22 ? ? -105.88 -61.76 50 7 ASN A 23 ? ? -33.80 -33.38 51 7 ARG A 26 ? ? -145.30 -154.46 52 7 LYS A 28 ? ? 39.95 24.00 53 7 PRO A 30 ? ? -57.70 -172.95 54 7 LEU A 61 ? ? -80.36 -146.78 55 8 PRO A 15 ? ? -48.38 171.08 56 8 VAL A 21 ? ? -102.31 -67.52 57 8 ARG A 26 ? ? -138.53 -148.06 58 8 LYS A 28 ? ? 45.42 19.12 59 8 PRO A 30 ? ? -57.20 -173.30 60 8 ARG A 37 ? ? -148.49 52.83 61 8 LEU A 61 ? ? -80.05 -145.89 62 9 PRO A 15 ? ? -53.99 172.36 63 9 VAL A 21 ? ? -94.28 -66.43 64 9 ARG A 26 ? ? -145.56 -67.62 65 9 PRO A 30 ? ? -56.04 -170.58 66 9 ARG A 37 ? ? -150.01 53.66 67 9 LEU A 61 ? ? -81.28 -146.51 68 10 PRO A 15 ? ? -46.91 171.20 69 10 VAL A 21 ? ? -102.19 -67.41 70 10 ARG A 26 ? ? -129.54 -156.80 71 10 LYS A 28 ? ? 42.38 23.79 72 10 PRO A 30 ? ? -54.84 -172.81 73 10 ALA A 52 ? ? 82.42 10.62 74 10 LEU A 61 ? ? -77.06 -149.94 75 11 PRO A 15 ? ? -46.11 169.28 76 11 THR A 22 ? ? -106.14 -70.88 77 11 ASN A 23 ? ? -24.87 -58.21 78 11 ARG A 26 ? ? -139.47 -147.23 79 11 LYS A 28 ? ? -95.42 39.41 80 11 PRO A 30 ? ? -45.16 178.69 81 11 ARG A 37 ? ? -140.92 34.61 82 11 GLU A 39 ? ? -69.87 6.01 83 11 LEU A 61 ? ? -80.04 -146.58 84 12 PRO A 15 ? ? -45.15 170.30 85 12 VAL A 21 ? ? -99.07 -66.19 86 12 ARG A 26 ? ? -153.95 -47.87 87 12 THR A 27 ? ? -151.35 17.70 88 12 PRO A 30 ? ? -54.72 -170.72 89 12 ARG A 37 ? ? -149.97 48.76 90 12 LEU A 61 ? ? -82.44 -145.39 91 13 PRO A 15 ? ? -48.11 171.45 92 13 THR A 22 ? ? -105.38 -65.25 93 13 ARG A 26 ? ? -139.67 -133.00 94 13 LYS A 28 ? ? -80.64 32.75 95 13 PRO A 30 ? ? -44.96 174.45 96 13 PRO A 31 ? ? -57.43 107.42 97 13 ARG A 37 ? ? -141.34 32.31 98 13 ALA A 52 ? ? 87.79 1.80 99 13 LEU A 61 ? ? -81.41 -144.61 100 14 PRO A 15 ? ? -49.30 169.71 101 14 THR A 22 ? ? -105.40 -69.33 102 14 ASN A 23 ? ? -27.83 -49.98 103 14 ARG A 26 ? ? -140.96 -146.10 104 14 LYS A 28 ? ? -93.33 37.90 105 14 PRO A 30 ? ? -41.22 171.00 106 14 PRO A 31 ? ? -57.73 107.50 107 14 GLU A 39 ? ? -69.58 6.39 108 14 LEU A 61 ? ? -79.94 -142.70 109 15 PRO A 15 ? ? -44.50 172.05 110 15 VAL A 21 ? ? -99.82 -67.63 111 15 THR A 22 ? ? -105.94 -63.20 112 15 ARG A 26 ? ? -144.56 -80.55 113 15 LYS A 28 ? ? -69.65 17.82 114 15 PRO A 30 ? ? -58.70 -173.51 115 15 ALA A 52 ? ? 86.73 4.80 116 15 LEU A 61 ? ? -81.27 -144.99 117 16 PRO A 15 ? ? -46.16 170.29 118 16 VAL A 21 ? ? -90.29 -65.94 119 16 THR A 22 ? ? -105.67 -80.20 120 16 ARG A 26 ? ? -108.69 -91.30 121 16 PRO A 30 ? ? -56.61 -170.76 122 16 ARG A 37 ? ? -150.47 67.22 123 16 LEU A 61 ? ? -79.70 -146.06 124 17 VAL A 20 ? ? -47.37 165.08 125 17 VAL A 21 ? ? -102.17 -67.85 126 17 THR A 22 ? ? -105.76 -74.63 127 17 ASN A 23 ? ? -24.70 -46.92 128 17 ARG A 26 ? ? -136.42 -88.24 129 17 THR A 27 ? ? -143.97 17.91 130 17 LYS A 28 ? ? -70.67 40.84 131 17 PRO A 30 ? ? -54.73 -172.02 132 17 ARG A 37 ? ? -145.17 45.54 133 17 LEU A 61 ? ? -81.56 -141.31 134 17 ALA A 62 ? ? -126.88 -167.23 135 18 PRO A 15 ? ? -53.92 172.15 136 18 THR A 22 ? ? -105.55 -63.30 137 18 ASN A 23 ? ? -33.68 -38.24 138 18 ARG A 26 ? ? -145.03 -84.89 139 18 PRO A 30 ? ? -56.99 -172.88 140 18 ARG A 37 ? ? -145.04 46.94 141 18 LEU A 61 ? ? -79.65 -145.13 142 19 PRO A 15 ? ? -46.50 170.36 143 19 THR A 22 ? ? -105.67 -72.61 144 19 ASN A 23 ? ? -24.95 -57.11 145 19 ARG A 26 ? ? -145.85 -83.05 146 19 THR A 27 ? ? -142.16 12.18 147 19 LYS A 28 ? ? -95.69 32.76 148 19 PRO A 30 ? ? -48.13 -174.64 149 19 LEU A 61 ? ? -79.29 -144.99 150 20 PRO A 15 ? ? -48.43 172.28 151 20 VAL A 21 ? ? -102.68 -67.15 152 20 THR A 22 ? ? -105.58 -63.87 153 20 ASN A 23 ? ? -38.43 -28.12 154 20 ARG A 26 ? ? -151.98 -52.01 155 20 THR A 27 ? ? -135.22 -83.04 156 20 LYS A 28 ? ? 42.80 21.39 157 20 PRO A 30 ? ? -56.48 -170.98 158 20 ARG A 37 ? ? -150.13 55.16 159 20 LEU A 61 ? ? -76.75 -149.17 160 20 LEU A 75 ? ? -150.17 68.75 161 21 PRO A 15 ? ? -48.09 172.08 162 21 ARG A 26 ? ? -140.70 -102.08 163 21 LYS A 28 ? ? -94.58 33.50 164 21 PRO A 30 ? ? -31.53 149.27 165 21 PRO A 31 ? ? -41.70 107.70 166 21 LEU A 61 ? ? -81.60 -147.08 #