HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-JUN-05 1ZVP TITLE CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION VC0802 FROM VIBRIO TITLE 2 CHOLERAE, POSSIBLE TRANSPORT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN VC0802; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: GI:9655251; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS VIBRIO CHOLERAE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,R.WU,S.MOY,F.COLLART,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 14-FEB-24 1ZVP 1 SEQADV REVDAT 3 13-JUL-11 1ZVP 1 VERSN REVDAT 2 24-FEB-09 1ZVP 1 VERSN REVDAT 1 19-JUL-05 1ZVP 0 JRNL AUTH R.ZHANG,R.WU,S.MOY,F.COLLART,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN VC0802 FROM JRNL TITL 2 VIBRIO CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 37076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1953 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2062 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.114 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3931 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5324 ; 1.327 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 6.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;37.287 ;25.987 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 663 ;19.767 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;19.433 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 637 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2890 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1645 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2658 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 243 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2595 ; 0.656 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4038 ; 1.215 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1462 ; 1.288 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1286 ; 2.300 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 68 REMARK 3 RESIDUE RANGE : A 69 A 131 REMARK 3 RESIDUE RANGE : B 2 B 68 REMARK 3 RESIDUE RANGE : B 69 B 131 REMARK 3 RESIDUE RANGE : C 0 C 68 REMARK 3 RESIDUE RANGE : C 69 C 129 REMARK 3 RESIDUE RANGE : D 1 D 68 REMARK 3 RESIDUE RANGE : D 69 D 131 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5210 30.4150 61.6120 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: -0.0184 REMARK 3 T33: -0.1388 T12: 0.1250 REMARK 3 T13: -0.0192 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 1.9116 L22: 2.3107 REMARK 3 L33: 0.2952 L12: -1.6512 REMARK 3 L13: -0.6938 L23: 0.7953 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.0109 S13: 0.0106 REMARK 3 S21: -0.0318 S22: -0.0096 S23: -0.0224 REMARK 3 S31: -0.0214 S32: -0.0005 S33: -0.0210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRIORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% GLYCEROL, PH 8.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.71650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.71650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.61200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.78050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.61200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.78050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.71650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.61200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.78050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.71650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.61200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.78050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS DIMER. MOLA+MOLD, MOLB+MOLC ARE TWO REMARK 300 DIMERS IN ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 80 REMARK 465 LEU A 81 REMARK 465 ALA A 132 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 79 REMARK 465 SER B 80 REMARK 465 ALA B 132 REMARK 465 HIS C 78 REMARK 465 SER C 79 REMARK 465 ALA C 130 REMARK 465 GLN C 131 REMARK 465 ALA C 132 REMARK 465 GLY D 0 REMARK 465 ALA D 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 516 O HOH D 482 1.50 REMARK 500 O HOH B 524 O HOH C 507 1.55 REMARK 500 O HOH A 257 O HOH D 518 1.74 REMARK 500 O HOH A 301 O HOH D 514 1.96 REMARK 500 O HOH B 513 O HOH C 507 2.03 REMARK 500 O HOH B 509 O HOH C 522 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 66 -126.33 -103.54 REMARK 500 ALA A 130 42.85 -79.78 REMARK 500 GLU B 39 72.27 39.34 REMARK 500 SER B 66 -154.43 -101.48 REMARK 500 SER B 67 -162.65 -114.51 REMARK 500 GLN C 61 48.65 -76.64 REMARK 500 ALA C 62 3.29 -161.62 REMARK 500 GLU C 128 -73.39 -115.17 REMARK 500 GLN D 61 33.02 -94.05 REMARK 500 SER D 66 117.50 -23.02 REMARK 500 GLU D 82 52.85 -141.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC26400 RELATED DB: TARGETDB DBREF 1ZVP A 1 132 GB 9655251 AAF93966 1 132 DBREF 1ZVP B 1 132 GB 9655251 AAF93966 1 132 DBREF 1ZVP C 1 132 GB 9655251 AAF93966 1 132 DBREF 1ZVP D 1 132 GB 9655251 AAF93966 1 132 SEQADV 1ZVP GLY A 0 GB 9655251 CLONING ARTIFACT SEQADV 1ZVP GLY B 0 GB 9655251 CLONING ARTIFACT SEQADV 1ZVP GLY C 0 GB 9655251 CLONING ARTIFACT SEQADV 1ZVP GLY D 0 GB 9655251 CLONING ARTIFACT SEQRES 1 A 133 GLY MET SER GLY ILE LYS SER LEU GLU LEU LEU LEU GLN SEQRES 2 A 133 SER MET SER PRO GLU LEU MET ALA GLY ASP TYR VAL PHE SEQRES 3 A 133 CYS THR VAL ASN GLY ALA LEU SER ASP TYR LEU SER LEU SEQRES 4 A 133 GLU PRO ILE ALA THR PHE ARG GLU PRO GLU GLY LEU THR SEQRES 5 A 133 LEU VAL LEU GLU ALA GLU LYS ALA GLN GLN ALA GLY LEU SEQRES 6 A 133 GLU SER SER ALA LEU PHE SER LEU ILE THR LEU THR VAL SEQRES 7 A 133 HIS SER SER LEU GLU ALA VAL GLY LEU THR ALA ALA PHE SEQRES 8 A 133 ALA THR LYS LEU ALA GLU HIS GLY ILE SER ALA ASN VAL SEQRES 9 A 133 ILE ALA GLY TYR TYR HIS ASP HIS ILE PHE VAL GLN LYS SEQRES 10 A 133 GLU LYS ALA GLN GLN ALA LEU GLN ALA LEU GLY GLU PHE SEQRES 11 A 133 ALA GLN ALA SEQRES 1 B 133 GLY MET SER GLY ILE LYS SER LEU GLU LEU LEU LEU GLN SEQRES 2 B 133 SER MET SER PRO GLU LEU MET ALA GLY ASP TYR VAL PHE SEQRES 3 B 133 CYS THR VAL ASN GLY ALA LEU SER ASP TYR LEU SER LEU SEQRES 4 B 133 GLU PRO ILE ALA THR PHE ARG GLU PRO GLU GLY LEU THR SEQRES 5 B 133 LEU VAL LEU GLU ALA GLU LYS ALA GLN GLN ALA GLY LEU SEQRES 6 B 133 GLU SER SER ALA LEU PHE SER LEU ILE THR LEU THR VAL SEQRES 7 B 133 HIS SER SER LEU GLU ALA VAL GLY LEU THR ALA ALA PHE SEQRES 8 B 133 ALA THR LYS LEU ALA GLU HIS GLY ILE SER ALA ASN VAL SEQRES 9 B 133 ILE ALA GLY TYR TYR HIS ASP HIS ILE PHE VAL GLN LYS SEQRES 10 B 133 GLU LYS ALA GLN GLN ALA LEU GLN ALA LEU GLY GLU PHE SEQRES 11 B 133 ALA GLN ALA SEQRES 1 C 133 GLY MET SER GLY ILE LYS SER LEU GLU LEU LEU LEU GLN SEQRES 2 C 133 SER MET SER PRO GLU LEU MET ALA GLY ASP TYR VAL PHE SEQRES 3 C 133 CYS THR VAL ASN GLY ALA LEU SER ASP TYR LEU SER LEU SEQRES 4 C 133 GLU PRO ILE ALA THR PHE ARG GLU PRO GLU GLY LEU THR SEQRES 5 C 133 LEU VAL LEU GLU ALA GLU LYS ALA GLN GLN ALA GLY LEU SEQRES 6 C 133 GLU SER SER ALA LEU PHE SER LEU ILE THR LEU THR VAL SEQRES 7 C 133 HIS SER SER LEU GLU ALA VAL GLY LEU THR ALA ALA PHE SEQRES 8 C 133 ALA THR LYS LEU ALA GLU HIS GLY ILE SER ALA ASN VAL SEQRES 9 C 133 ILE ALA GLY TYR TYR HIS ASP HIS ILE PHE VAL GLN LYS SEQRES 10 C 133 GLU LYS ALA GLN GLN ALA LEU GLN ALA LEU GLY GLU PHE SEQRES 11 C 133 ALA GLN ALA SEQRES 1 D 133 GLY MET SER GLY ILE LYS SER LEU GLU LEU LEU LEU GLN SEQRES 2 D 133 SER MET SER PRO GLU LEU MET ALA GLY ASP TYR VAL PHE SEQRES 3 D 133 CYS THR VAL ASN GLY ALA LEU SER ASP TYR LEU SER LEU SEQRES 4 D 133 GLU PRO ILE ALA THR PHE ARG GLU PRO GLU GLY LEU THR SEQRES 5 D 133 LEU VAL LEU GLU ALA GLU LYS ALA GLN GLN ALA GLY LEU SEQRES 6 D 133 GLU SER SER ALA LEU PHE SER LEU ILE THR LEU THR VAL SEQRES 7 D 133 HIS SER SER LEU GLU ALA VAL GLY LEU THR ALA ALA PHE SEQRES 8 D 133 ALA THR LYS LEU ALA GLU HIS GLY ILE SER ALA ASN VAL SEQRES 9 D 133 ILE ALA GLY TYR TYR HIS ASP HIS ILE PHE VAL GLN LYS SEQRES 10 D 133 GLU LYS ALA GLN GLN ALA LEU GLN ALA LEU GLY GLU PHE SEQRES 11 D 133 ALA GLN ALA FORMUL 5 HOH *322(H2 O) HELIX 1 1 ILE A 4 SER A 13 1 10 HELIX 2 2 ALA A 31 GLU A 39 5 9 HELIX 3 3 ALA A 56 ALA A 62 1 7 HELIX 4 4 GLY A 85 HIS A 97 1 13 HELIX 5 5 LYS A 118 GLY A 127 1 10 HELIX 6 6 SER B 2 GLN B 12 1 11 HELIX 7 7 ALA B 31 GLU B 39 5 9 HELIX 8 8 ALA B 56 ALA B 62 1 7 HELIX 9 9 GLY B 85 HIS B 97 1 13 HELIX 10 10 LYS B 118 GLY B 127 1 10 HELIX 11 11 MET C 1 LEU C 11 1 11 HELIX 12 12 ALA C 31 GLU C 39 5 9 HELIX 13 13 ALA C 56 GLN C 61 1 6 HELIX 14 14 GLY C 85 GLU C 96 1 12 HELIX 15 15 LYS C 118 GLY C 127 1 10 HELIX 16 16 MET D 1 LEU D 11 1 11 HELIX 17 17 ALA D 31 GLU D 39 5 9 HELIX 18 18 ALA D 56 GLN D 61 1 6 HELIX 19 19 GLY D 85 GLU D 96 1 12 HELIX 20 20 LYS D 118 GLY D 127 1 10 SHEET 1 A 4 SER A 15 LEU A 18 0 SHEET 2 A 4 PHE A 70 THR A 76 -1 O THR A 76 N SER A 15 SHEET 3 A 4 ASP A 110 GLN A 115 -1 O ILE A 112 N ILE A 73 SHEET 4 A 4 ASN A 102 ALA A 105 -1 N ILE A 104 O HIS A 111 SHEET 1 B 6 TYR A 23 VAL A 28 0 SHEET 2 B 6 GLY A 49 GLU A 55 -1 O LEU A 50 N VAL A 28 SHEET 3 B 6 ALA A 42 GLU A 46 -1 N PHE A 44 O THR A 51 SHEET 4 B 6 ALA D 42 GLU D 46 -1 O THR D 43 N THR A 43 SHEET 5 B 6 GLY D 49 GLU D 55 -1 O THR D 51 N PHE D 44 SHEET 6 B 6 TYR D 23 VAL D 28 -1 N CYS D 26 O LEU D 52 SHEET 1 C 4 SER B 15 LEU B 18 0 SHEET 2 C 4 PHE B 70 THR B 76 -1 O THR B 74 N GLU B 17 SHEET 3 C 4 ASP B 110 GLN B 115 -1 O ILE B 112 N ILE B 73 SHEET 4 C 4 ASN B 102 ALA B 105 -1 N ILE B 104 O HIS B 111 SHEET 1 D 6 TYR B 23 VAL B 28 0 SHEET 2 D 6 GLY B 49 GLU B 55 -1 O LEU B 52 N CYS B 26 SHEET 3 D 6 ALA B 42 GLU B 46 -1 N PHE B 44 O THR B 51 SHEET 4 D 6 ALA C 42 GLU C 46 -1 O THR C 43 N THR B 43 SHEET 5 D 6 GLY C 49 GLU C 55 -1 O THR C 51 N PHE C 44 SHEET 6 D 6 TYR C 23 VAL C 28 -1 N VAL C 24 O LEU C 54 SHEET 1 E 4 PRO C 16 LEU C 18 0 SHEET 2 E 4 PHE C 70 LEU C 75 -1 O THR C 74 N GLU C 17 SHEET 3 E 4 ASP C 110 GLN C 115 -1 O ILE C 112 N ILE C 73 SHEET 4 E 4 ALA C 101 ALA C 105 -1 N ASN C 102 O PHE C 113 SHEET 1 F 4 PRO D 16 LEU D 18 0 SHEET 2 F 4 PHE D 70 LEU D 75 -1 O THR D 74 N GLU D 17 SHEET 3 F 4 ASP D 110 GLN D 115 -1 O ILE D 112 N ILE D 73 SHEET 4 F 4 ASN D 102 ALA D 105 -1 N ILE D 104 O HIS D 111 CISPEP 1 HIS A 78 SER A 79 0 -2.60 CRYST1 97.224 99.561 163.433 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006119 0.00000