HEADER TRANSCRIPTION 03-JUN-05 1ZW8 TITLE SOLUTION STRUCTURE OF A ZAP1 ZINC-RESPONSIVE DOMAIN PROVIDES INSIGHTS TITLE 2 INTO METALLOREGULATORY TRANSCRIPTIONAL REPRESSION IN SACCHAROMYCES TITLE 3 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC-RESPONSIVE TRANSCRIPTIONAL REGULATOR ZAP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TWO INTERACTING ZINC FINGERS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ZAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P21A-ZZF1-2; SOURCE 11 OTHER_DETAILS: ZAP1 GENE DERIVED FROM PYEF2ZAP1. (GIFT FROM D.J. SOURCE 12 EIDE, UNIVERSITY OF WISCONSIN-MADISON). ZZF1-2 PORTION OF GENE SOURCE 13 CLONED INTO PET-21A PLASMID (NOVAGEN). FURTHER DETAILS CAN BE FOUND SOURCE 14 IN ENTRY CITATION. KEYWDS ZAP1; INTERACTING C2H2 ZINC FINGERS; BETA-BETA-ALPHA; NMR SOLUTION KEYWDS 2 STRUCTURE, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.WANG,L.S.FENG,K.VENKATARAMAN,V.A.MATSKEVICH,P.PARASURAM,J.H.LAITY REVDAT 4 20-OCT-21 1ZW8 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1ZW8 1 VERSN REVDAT 2 28-MAR-06 1ZW8 1 JRNL REVDAT 1 10-JAN-06 1ZW8 0 JRNL AUTH Z.WANG,L.S.FENG,V.MATSKEVICH,K.VENKATARAMAN,P.PARASURAM, JRNL AUTH 2 J.H.LAITY JRNL TITL SOLUTION STRUCTURE OF A ZAP1 ZINC-RESPONSIVE DOMAIN PROVIDES JRNL TITL 2 INSIGHTS INTO METALLOREGULATORY TRANSCRIPTIONAL REPRESSION JRNL TITL 3 IN SACCHAROMYCES CEREVISIAE. JRNL REF J.MOL.BIOL. V. 357 1167 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16483601 JRNL DOI 10.1016/J.JMB.2006.01.010 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.BIRD,K.MCCAL,M.KRAMER,E.BLANKMAN,D.R.WINGE,D.J.EID REMARK 1 TITL ZINC FINGERS CAN ACT AS ZN(II) SENSORS TO REGULATE REMARK 1 TITL 2 TRANSCRIPTIONAL ACTIVATION DOMAIN FUNCTION REMARK 1 REF EMBO J. V. 22 5137 2003 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.ZHAO,D.J.EIDE REMARK 1 TITL ZAP1P, A METALLOREGULATORY PROTEIN INVOLVED IN REMARK 1 TITL 2 ZINC-RESPONSIVE TRANSCRIPTIONAL REGULATION IN SACCHAROMYCES REMARK 1 TITL 3 CEREVISIAE REMARK 1 REF MOL.CELL V. 17 5044 1997 REMARK 1 REFN ISSN 1097-2765 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : A.T.BRUNGER, P.D.ADAMS, G.M.CLORE, W.L.DELANO, REMARK 3 P.GROS, R.W.GROSSE-KUNSTLEVE, J.-S.JIANG, REMARK 3 J.KUSZEWSKI, M.NILGES, N.S.PANNU, R.J.READ, REMARK 3 L.M.RICE, T.SIMONSON, G.L.WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1443 NOE-DERIVED DISTANCE RESTRAINTS, REMARK 3 AND 98 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 1ZW8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033195. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : NO SALT REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM PROTEIN, 1.5 MM ZN(II), REMARK 210 20 MM MES, 0.2 MM DSS, 1 MM NAN2, REMARK 210 5 MM BETA-MERCAPTOETHANOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS COMBINED REMARK 210 WITH CARTESIAN REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 PULSE SQUENCES WERE FROM THE VARIAN BIOPACK SOFTWARE PACKAGE ADD-ON REMARK 210 WITHIN VNMR TWO 3D 13C-NOESY-HSQC SPECTRA WERE RECORDED IN 99% REMARK 210 (V/V)D2O WITH CARRIER CENTERED ON ALIPHATIC (43 PPM) AND AROMATIC REMARK 210 (125 REMARK 210 PPM) REGIONS, RESPECTIVIELY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 57 H ILE A 61 1.57 REMARK 500 O LEU A 20 H LEU A 24 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 29 86.01 -161.05 REMARK 500 1 GLN A 31 109.85 66.84 REMARK 500 1 MET A 37 70.76 -155.17 REMARK 500 2 VAL A 29 84.32 -161.76 REMARK 500 2 GLN A 31 112.79 62.96 REMARK 500 2 MET A 37 28.41 -140.31 REMARK 500 3 GLN A 31 103.57 62.80 REMARK 500 3 PHE A 33 -40.86 80.22 REMARK 500 3 MET A 37 30.11 -163.19 REMARK 500 4 GLN A 31 82.86 -56.64 REMARK 500 4 PHE A 33 -26.69 -177.59 REMARK 500 4 MET A 37 37.30 -175.77 REMARK 500 5 VAL A 29 59.82 -172.77 REMARK 500 5 GLN A 31 92.04 43.46 REMARK 500 5 LYS A 34 90.98 43.42 REMARK 500 6 GLN A 31 90.26 62.03 REMARK 500 6 MET A 37 51.56 -113.13 REMARK 500 7 GLN A 31 69.58 61.49 REMARK 500 8 GLN A 31 142.59 63.62 REMARK 500 8 PHE A 33 -65.86 67.52 REMARK 500 8 LYS A 34 46.00 -92.26 REMARK 500 8 MET A 37 68.09 -177.47 REMARK 500 8 ASN A 43 30.14 -98.04 REMARK 500 9 VAL A 29 66.29 -168.44 REMARK 500 9 GLN A 31 102.02 64.97 REMARK 500 9 GLU A 38 97.10 -165.80 REMARK 500 10 GLN A 31 91.40 62.24 REMARK 500 10 MET A 37 85.70 -151.77 REMARK 500 11 GLN A 31 95.36 43.85 REMARK 500 11 LYS A 34 105.28 63.83 REMARK 500 12 GLN A 31 91.80 32.76 REMARK 500 12 GLU A 38 114.31 -165.66 REMARK 500 13 GLN A 31 77.04 44.79 REMARK 500 13 PHE A 33 -175.84 61.93 REMARK 500 13 MET A 37 47.34 -175.42 REMARK 500 14 GLN A 31 108.46 61.58 REMARK 500 14 PHE A 33 -167.57 -177.53 REMARK 500 14 MET A 37 53.19 -172.80 REMARK 500 15 VAL A 29 69.50 -166.07 REMARK 500 15 GLN A 31 123.06 76.89 REMARK 500 15 MET A 37 82.15 -154.03 REMARK 500 16 GLN A 31 84.13 60.94 REMARK 500 16 PHE A 33 -177.53 61.14 REMARK 500 16 MET A 37 88.75 -162.56 REMARK 500 17 GLN A 31 73.95 61.81 REMARK 500 17 PHE A 33 -165.03 -169.42 REMARK 500 18 GLN A 31 84.94 80.07 REMARK 500 18 PHE A 33 -57.24 73.59 REMARK 500 18 LYS A 34 80.69 -61.47 REMARK 500 18 MET A 37 -73.22 -108.35 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 66 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 CYS A 10 SG 109.9 REMARK 620 3 HIS A 23 NE2 109.6 110.7 REMARK 620 4 HIS A 28 NE2 110.2 109.2 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 67 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 42 SG REMARK 620 2 CYS A 47 SG 112.7 REMARK 620 3 HIS A 60 NE2 110.1 111.1 REMARK 620 4 HIS A 65 NE2 111.6 108.6 102.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 66 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 67 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6648 RELATED DB: BMRB REMARK 900 TWO ZINC FINGERS THAT FORM AN UNUSUAL STABLE INTERACTING MOTIF REMARK 900 SIMILAR TO F1-2 OF HUMAN GLIOBLASTOMA PROTO-ONCOGENE PROTEIN REMARK 900 [PAVLETICH AND PABO 1993, SCIENCE 261(5129) PP1701-1707] REMARK 900 RELATED ID: 6653 RELATED DB: BMRB REMARK 900 SINGLE ZINC FINGER (ZZF1L) OF ZZF1-2 USED FOR COMPARATIVE STUDY. DBREF 1ZW8 A 2 65 UNP P47043 ZAP1_YEAST 578 641 SEQADV 1ZW8 ALA A 14 UNP P47043 CYS 590 ENGINEERED MUTATION SEQADV 1ZW8 ALA A 55 UNP P47043 CYS 631 ENGINEERED MUTATION SEQADV 1ZW8 ALA A 63 UNP P47043 CYS 639 ENGINEERED MUTATION SEQRES 1 A 64 ASP LEU LYS CYS LYS TRP LYS GLU CYS PRO GLU SER ALA SEQRES 2 A 64 SER SER LEU PHE ASP LEU GLN ARG HIS LEU LEU LYS ASP SEQRES 3 A 64 HIS VAL SER GLN ASP PHE LYS HIS PRO MET GLU PRO LEU SEQRES 4 A 64 ALA CYS ASN TRP GLU ASP CYS ASP PHE LEU GLY ASP ASP SEQRES 5 A 64 THR ALA SER ILE VAL ASN HIS ILE ASN ALA GLN HIS HET ZN A 66 1 HET ZN A 67 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 SER A 16 HIS A 28 1 13 HELIX 2 2 ASP A 53 HIS A 65 1 13 SHEET 1 A 2 LEU A 40 ALA A 41 0 SHEET 2 A 2 LEU A 50 GLY A 51 -1 O GLY A 51 N LEU A 40 LINK SG CYS A 5 ZN ZN A 66 1555 1555 2.31 LINK SG CYS A 10 ZN ZN A 66 1555 1555 2.30 LINK NE2 HIS A 23 ZN ZN A 66 1555 1555 2.00 LINK NE2 HIS A 28 ZN ZN A 66 1555 1555 2.00 LINK SG CYS A 42 ZN ZN A 67 1555 1555 2.32 LINK SG CYS A 47 ZN ZN A 67 1555 1555 2.29 LINK NE2 HIS A 60 ZN ZN A 67 1555 1555 1.99 LINK NE2 HIS A 65 ZN ZN A 67 1555 1555 2.00 SITE 1 AC1 4 CYS A 5 CYS A 10 HIS A 23 HIS A 28 SITE 1 AC2 5 CYS A 42 CYS A 47 PHE A 49 HIS A 60 SITE 2 AC2 5 HIS A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1