data_1ZX7 # _entry.id 1ZX7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZX7 pdb_00001zx7 10.2210/pdb1zx7/pdb NDB AR0064 ? ? RCSB RCSB033223 ? ? WWPDB D_1000033223 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-09-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZX7 _pdbx_database_status.recvd_initial_deposition_date 2005-06-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1ZZ5 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, Q.' 1 'Zhao, F.' 2 'Blount, K.F.' 3 'Han, Q.' 4 'Tor, Y.' 5 'Hermann, T.' 6 # _citation.id primary _citation.title 'Molecular recognition of RNA by neomycin and a restricted neomycin derivative' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 44 _citation.page_first 5329 _citation.page_last 5334 _citation.year 2005 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16037995 _citation.pdbx_database_id_DOI 10.1002/anie.200500903 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, F.' 1 ? primary 'Zhao, Q.' 2 ? primary 'Blount, K.F.' 3 ? primary 'Han, Q.' 4 ? primary 'Tor, Y.' 5 ? primary 'Hermann, T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3'" 4903.961 4 ? ? 'Ribosomal RNA A-site' ? 2 polymer syn "5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3'" 4380.691 4 ? ? 'Ribosomal RNA A-site' ? 3 water nat water 18.015 92 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GUGGUGAAGUCGCGG GUGGUGAAGUCGCGG A,C,E,G ? 2 polyribonucleotide no no CGCGUCACACCACC CGCGUCACACCACC B,D,F,H ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 G n 1 4 G n 1 5 U n 1 6 G n 1 7 A n 1 8 A n 1 9 G n 1 10 U n 1 11 C n 1 12 G n 1 13 C n 1 14 G n 1 15 G n 2 1 C n 2 2 G n 2 3 C n 2 4 G n 2 5 U n 2 6 C n 2 7 A n 2 8 C n 2 9 A n 2 10 C n 2 11 C n 2 12 A n 2 13 C n 2 14 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? ;This sequence occurs naturally in Escherichia coli (bacteria) except one residue was removed near 3' terminal ; 2 1 sample ? ? ? ? ? ;This sequence occurs naturally in Escherichia coli (bacteri)a except one residue was removed near 5' terminal ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 2 2 G GUA A . n A 1 2 U 2 3 3 U URI A . n A 1 3 G 3 4 4 G GUA A . n A 1 4 G 4 5 5 G GUA A . n A 1 5 U 5 6 6 U URI A . n A 1 6 G 6 7 7 G GUA A . n A 1 7 A 7 8 8 A ADE A . n A 1 8 A 8 9 9 A ADE A . n A 1 9 G 9 10 10 G GUA A . n A 1 10 U 10 11 11 U URI A . n A 1 11 C 11 12 12 C CYT A . n A 1 12 G 12 13 13 G GUA A . n A 1 13 C 13 14 14 C CYT A . n A 1 14 G 14 15 15 G GUA A . n A 1 15 G 15 16 16 G GUA A . n B 2 1 C 1 21 21 C CYT B . n B 2 2 G 2 22 22 G GUA B . n B 2 3 C 3 23 23 C CYT B . n B 2 4 G 4 24 24 G GUA B . n B 2 5 U 5 25 25 U URI B . n B 2 6 C 6 26 26 C CYT B . n B 2 7 A 7 27 27 A ADE B . n B 2 8 C 8 28 28 C CYT B . n B 2 9 A 9 29 29 A ADE B . n B 2 10 C 10 30 30 C CYT B . n B 2 11 C 11 31 31 C CYT B . n B 2 12 A 12 32 32 A ADE B . n B 2 13 C 13 33 33 C CYT B . n B 2 14 C 14 34 34 C CYT B . n C 1 1 G 1 2 2 G GUA C . n C 1 2 U 2 3 3 U URI C . n C 1 3 G 3 4 4 G GUA C . n C 1 4 G 4 5 5 G GUA C . n C 1 5 U 5 6 6 U URI C . n C 1 6 G 6 7 7 G GUA C . n C 1 7 A 7 8 8 A ADE C . n C 1 8 A 8 9 9 A ADE C . n C 1 9 G 9 10 10 G GUA C . n C 1 10 U 10 11 11 U URI C . n C 1 11 C 11 12 12 C CYT C . n C 1 12 G 12 13 13 G GUA C . n C 1 13 C 13 14 14 C CYT C . n C 1 14 G 14 15 15 G GUA C . n C 1 15 G 15 16 16 G GUA C . n D 2 1 C 1 21 21 C CYT D . n D 2 2 G 2 22 22 G GUA D . n D 2 3 C 3 23 23 C CYT D . n D 2 4 G 4 24 24 G GUA D . n D 2 5 U 5 25 25 U URI D . n D 2 6 C 6 26 26 C CYT D . n D 2 7 A 7 27 27 A ADE D . n D 2 8 C 8 28 28 C CYT D . n D 2 9 A 9 29 29 A ADE D . n D 2 10 C 10 30 30 C CYT D . n D 2 11 C 11 31 31 C CYT D . n D 2 12 A 12 32 32 A ADE D . n D 2 13 C 13 33 33 C CYT D . n D 2 14 C 14 34 34 C CYT D . n E 1 1 G 1 2 2 G GUA E . n E 1 2 U 2 3 3 U URI E . n E 1 3 G 3 4 4 G GUA E . n E 1 4 G 4 5 5 G GUA E . n E 1 5 U 5 6 6 U URI E . n E 1 6 G 6 7 7 G GUA E . n E 1 7 A 7 8 8 A ADE E . n E 1 8 A 8 9 9 A ADE E . n E 1 9 G 9 10 10 G GUA E . n E 1 10 U 10 11 11 U URI E . n E 1 11 C 11 12 12 C CYT E . n E 1 12 G 12 13 13 G GUA E . n E 1 13 C 13 14 14 C CYT E . n E 1 14 G 14 15 15 G GUA E . n E 1 15 G 15 16 16 G GUA E . n F 2 1 C 1 21 21 C CYT F . n F 2 2 G 2 22 22 G GUA F . n F 2 3 C 3 23 23 C CYT F . n F 2 4 G 4 24 24 G GUA F . n F 2 5 U 5 25 25 U URI F . n F 2 6 C 6 26 26 C CYT F . n F 2 7 A 7 27 27 A ADE F . n F 2 8 C 8 28 28 C CYT F . n F 2 9 A 9 29 29 A ADE F . n F 2 10 C 10 30 30 C CYT F . n F 2 11 C 11 31 31 C CYT F . n F 2 12 A 12 32 32 A ADE F . n F 2 13 C 13 33 33 C CYT F . n F 2 14 C 14 34 34 C CYT F . n G 1 1 G 1 2 2 G GUA G . n G 1 2 U 2 3 3 U URI G . n G 1 3 G 3 4 4 G GUA G . n G 1 4 G 4 5 5 G GUA G . n G 1 5 U 5 6 6 U URI G . n G 1 6 G 6 7 7 G GUA G . n G 1 7 A 7 8 8 A ADE G . n G 1 8 A 8 9 9 A ADE G . n G 1 9 G 9 10 10 G GUA G . n G 1 10 U 10 11 11 U URI G . n G 1 11 C 11 12 12 C CYT G . n G 1 12 G 12 13 13 G GUA G . n G 1 13 C 13 14 14 C CYT G . n G 1 14 G 14 15 15 G GUA G . n G 1 15 G 15 16 16 G GUA G . n H 2 1 C 1 21 21 C CYT H . n H 2 2 G 2 22 22 G GUA H . n H 2 3 C 3 23 23 C CYT H . n H 2 4 G 4 24 24 G GUA H . n H 2 5 U 5 25 25 U URI H . n H 2 6 C 6 26 26 C CYT H . n H 2 7 A 7 27 27 A ADE H . n H 2 8 C 8 28 28 C CYT H . n H 2 9 A 9 29 29 A ADE H . n H 2 10 C 10 30 30 C CYT H . n H 2 11 C 11 31 31 C CYT H . n H 2 12 A 12 32 32 A ADE H . n H 2 13 C 13 33 33 C CYT H . n H 2 14 C 14 34 34 C CYT H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 HOH 1 17 4 HOH TIP A . I 3 HOH 2 18 17 HOH TIP A . I 3 HOH 3 19 19 HOH TIP A . I 3 HOH 4 20 25 HOH TIP A . I 3 HOH 5 21 27 HOH TIP A . I 3 HOH 6 22 29 HOH TIP A . I 3 HOH 7 23 39 HOH TIP A . I 3 HOH 8 24 45 HOH TIP A . I 3 HOH 9 25 46 HOH TIP A . I 3 HOH 10 26 50 HOH TIP A . I 3 HOH 11 27 58 HOH TIP A . I 3 HOH 12 28 61 HOH TIP A . I 3 HOH 13 29 62 HOH TIP A . I 3 HOH 14 30 66 HOH TIP A . I 3 HOH 15 31 74 HOH TIP A . I 3 HOH 16 32 77 HOH TIP A . I 3 HOH 17 33 86 HOH TIP A . I 3 HOH 18 34 102 HOH TIP A . J 3 HOH 1 35 8 HOH TIP B . J 3 HOH 2 36 22 HOH TIP B . J 3 HOH 3 37 28 HOH TIP B . J 3 HOH 4 38 34 HOH TIP B . J 3 HOH 5 39 41 HOH TIP B . J 3 HOH 6 40 57 HOH TIP B . J 3 HOH 7 41 69 HOH TIP B . J 3 HOH 8 42 100 HOH TIP B . K 3 HOH 1 17 15 HOH TIP C . K 3 HOH 2 18 18 HOH TIP C . K 3 HOH 3 19 23 HOH TIP C . K 3 HOH 4 20 26 HOH TIP C . K 3 HOH 5 21 33 HOH TIP C . K 3 HOH 6 22 35 HOH TIP C . K 3 HOH 7 23 36 HOH TIP C . K 3 HOH 8 24 49 HOH TIP C . K 3 HOH 9 25 53 HOH TIP C . K 3 HOH 10 26 59 HOH TIP C . K 3 HOH 11 27 64 HOH TIP C . K 3 HOH 12 28 71 HOH TIP C . K 3 HOH 13 29 72 HOH TIP C . K 3 HOH 14 30 75 HOH TIP C . K 3 HOH 15 31 78 HOH TIP C . K 3 HOH 16 32 96 HOH TIP C . K 3 HOH 17 33 98 HOH TIP C . K 3 HOH 18 34 101 HOH TIP C . K 3 HOH 19 35 105 HOH TIP C . L 3 HOH 1 35 7 HOH TIP D . L 3 HOH 2 36 21 HOH TIP D . L 3 HOH 3 37 31 HOH TIP D . L 3 HOH 4 38 43 HOH TIP D . L 3 HOH 5 39 67 HOH TIP D . M 3 HOH 1 17 11 HOH TIP E . M 3 HOH 2 18 12 HOH TIP E . M 3 HOH 3 19 13 HOH TIP E . M 3 HOH 4 20 20 HOH TIP E . M 3 HOH 5 21 24 HOH TIP E . M 3 HOH 6 22 42 HOH TIP E . M 3 HOH 7 23 55 HOH TIP E . M 3 HOH 8 24 56 HOH TIP E . M 3 HOH 9 25 65 HOH TIP E . M 3 HOH 10 26 70 HOH TIP E . M 3 HOH 11 27 103 HOH TIP E . N 3 HOH 1 35 10 HOH TIP F . N 3 HOH 2 36 14 HOH TIP F . N 3 HOH 3 37 30 HOH TIP F . N 3 HOH 4 38 38 HOH TIP F . N 3 HOH 5 39 47 HOH TIP F . N 3 HOH 6 40 60 HOH TIP F . N 3 HOH 7 41 76 HOH TIP F . N 3 HOH 8 42 81 HOH TIP F . N 3 HOH 9 43 82 HOH TIP F . N 3 HOH 10 44 88 HOH TIP F . O 3 HOH 1 17 3 HOH TIP G . O 3 HOH 2 18 9 HOH TIP G . O 3 HOH 3 19 32 HOH TIP G . O 3 HOH 4 20 37 HOH TIP G . O 3 HOH 5 21 44 HOH TIP G . O 3 HOH 6 22 48 HOH TIP G . O 3 HOH 7 23 51 HOH TIP G . O 3 HOH 8 24 52 HOH TIP G . O 3 HOH 9 25 63 HOH TIP G . O 3 HOH 10 26 80 HOH TIP G . O 3 HOH 11 27 85 HOH TIP G . O 3 HOH 12 28 89 HOH TIP G . P 3 HOH 1 5 5 HOH TIP H . P 3 HOH 2 16 16 HOH TIP H . P 3 HOH 3 40 40 HOH TIP H . P 3 HOH 4 54 54 HOH TIP H . P 3 HOH 5 73 73 HOH TIP H . P 3 HOH 6 79 79 HOH TIP H . P 3 HOH 7 83 83 HOH TIP H . P 3 HOH 8 90 90 HOH TIP H . P 3 HOH 9 94 94 HOH TIP H . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _cell.entry_id 1ZX7 _cell.length_a 32.650 _cell.length_b 153.200 _cell.length_c 32.740 _cell.angle_alpha 90.00 _cell.angle_beta 90.10 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZX7 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1ZX7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_percent_sol 43.2 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, magnesium chloride, cacodylate, pH 6.8, EVAPORATION, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'ammonium sulfate' ? ? ? 1 2 1 'magnesium chloride' ? ? ? 1 3 1 cacodylate ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'ammonium sulfate' ? ? ? 1 6 2 'magnesium chloride' ? ? ? 1 7 2 cacodylate ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 103 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2002-10-31 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1ZX7 _reflns.observed_criterion_sigma_F 3 _reflns.observed_criterion_sigma_I 3 _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 30.0 _reflns.number_all 17400 _reflns.number_obs 16300 _reflns.percent_possible_obs 93.5 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 17.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.23 _reflns_shell.percent_possible_all 72.2 _reflns_shell.Rmerge_I_obs 0.384 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1247 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ZX7 _refine.ls_d_res_high 2.15 _refine.ls_d_res_low 8.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 17092 _refine.ls_number_reflns_obs 15264 _refine.ls_number_reflns_R_free 1526 _refine.ls_percent_reflns_obs 89.3 _refine.ls_R_factor_all 0.262 _refine.ls_R_factor_obs 0.262 _refine.ls_R_factor_R_work 0.251 _refine.ls_R_factor_R_free 0.2923 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.B_iso_mean 29.2 _refine.aniso_B[1][1] -4.3 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 2.38 _refine.aniso_B[2][2] 0.85 _refine.aniso_B[2][3] 0.0 _refine.aniso_B[3][3] 3.42 _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ZX7 _refine_analyze.Luzzati_coordinate_error_obs 0.44 _refine_analyze.Luzzati_sigma_a_obs 0.31 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.5 _refine_analyze.Luzzati_sigma_a_free 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2456 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 2548 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004589 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.97630 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.15 _refine_ls_shell.d_res_low 2.28 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.404 _refine_ls_shell.percent_reflns_obs 70.8 _refine_ls_shell.R_factor_R_free 0.382 _refine_ls_shell.R_factor_R_free_error 0.027 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 203 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1ZX7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ZX7 _struct.title 'Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZX7 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Ribosome, RNA, A-site. double helix' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1ZX7 1ZX7 ? ? ? 2 2 PDB 1ZX7 1ZX7 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZX7 A 1 ? 15 ? 1ZX7 2 ? 16 ? 2 16 2 2 1ZX7 B 1 ? 14 ? 1ZX7 21 ? 34 ? 21 34 3 1 1ZX7 C 1 ? 15 ? 1ZX7 2 ? 16 ? 2 16 4 2 1ZX7 D 1 ? 14 ? 1ZX7 21 ? 34 ? 21 34 5 1 1ZX7 E 1 ? 15 ? 1ZX7 2 ? 16 ? 2 16 6 2 1ZX7 F 1 ? 14 ? 1ZX7 21 ? 34 ? 21 34 7 1 1ZX7 G 1 ? 15 ? 1ZX7 2 ? 16 ? 2 16 8 2 1ZX7 H 1 ? 14 ? 1ZX7 21 ? 34 ? 21 34 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 4 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,I,J 2 1 C,D,K,L 3 1 E,F,M,N 4 1 G,H,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 ;The chains A and B, C and D, E and F, G and H forms four double-helix RNA biological unit. The four units are related by non-crystallographic symmetry in the asymmetric unit. ; ? 2 ? ? 3 ? ? 4 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 2 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 2 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 2 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 12 N1 ? ? A U 3 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 12 N6 ? ? A U 3 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 4 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 4 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 4 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 5 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 5 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 5 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 6 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 6 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 7 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 7 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 7 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 10 N3 ? ? ? 1_555 B U 5 O4 ? ? A U 11 B U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog21 hydrog ? ? A U 10 O2 ? ? ? 1_555 B U 5 N3 ? ? A U 11 B U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog22 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 12 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 12 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 12 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 13 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 13 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 13 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 15 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 15 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 15 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 14 N3 ? ? ? 1_555 G G 15 N1 ? ? B C 34 G G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 14 N4 ? ? ? 1_555 G G 15 O6 ? ? B C 34 G G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 14 O2 ? ? ? 1_555 G G 15 N2 ? ? B C 34 G G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 13 O2 ? ? C G 2 D C 33 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog38 hydrog ? ? C U 2 N3 ? ? ? 1_555 D A 12 N1 ? ? C U 3 D A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C U 2 O4 ? ? ? 1_555 D A 12 N6 ? ? C U 3 D A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 4 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 4 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 4 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 10 N3 ? ? C G 5 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 10 O2 ? ? C G 5 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 10 N4 ? ? C G 5 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C U 5 N3 ? ? ? 1_555 D A 9 N1 ? ? C U 6 D A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C U 5 O4 ? ? ? 1_555 D A 9 N6 ? ? C U 6 D A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 8 N3 ? ? C G 7 D C 28 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog49 hydrog ? ? C G 9 N1 ? ? ? 1_555 D C 6 N3 ? ? C G 10 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 9 N2 ? ? ? 1_555 D C 6 O2 ? ? C G 10 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C G 9 O6 ? ? ? 1_555 D C 6 N4 ? ? C G 10 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C U 10 N3 ? ? ? 1_555 D U 5 O4 ? ? C U 11 D U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog53 hydrog ? ? C U 10 O2 ? ? ? 1_555 D U 5 N3 ? ? C U 11 D U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog54 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 12 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 12 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 12 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C C 11 O2 ? ? ? 1_555 D U 5 N3 ? ? C C 12 D U 25 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog58 hydrog ? ? C G 12 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 13 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C G 12 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 13 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C G 12 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 13 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C C 13 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 14 D G 22 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog62 hydrog ? ? C G 14 N1 ? ? ? 1_555 D C 1 N3 ? ? C G 15 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 14 N2 ? ? ? 1_555 D C 1 O2 ? ? C G 15 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 14 O6 ? ? ? 1_555 D C 1 N4 ? ? C G 15 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 15 N1 ? ? ? 1_555 F C 14 N3 ? ? C G 16 F C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C G 15 N2 ? ? ? 1_555 F C 14 O2 ? ? C G 16 F C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C G 15 O6 ? ? ? 1_555 F C 14 N4 ? ? C G 16 F C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E G 1 N1 ? ? ? 1_555 F C 13 O2 ? ? E G 2 F C 33 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog69 hydrog ? ? E U 2 N3 ? ? ? 1_555 F A 12 N1 ? ? E U 3 F A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E U 2 O4 ? ? ? 1_555 F A 12 N6 ? ? E U 3 F A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E G 3 N1 ? ? ? 1_555 F C 11 N3 ? ? E G 4 F C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E G 3 N2 ? ? ? 1_555 F C 11 O2 ? ? E G 4 F C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E G 3 O6 ? ? ? 1_555 F C 11 N4 ? ? E G 4 F C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E G 4 N1 ? ? ? 1_555 F C 10 N3 ? ? E G 5 F C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? E G 4 N2 ? ? ? 1_555 F C 10 O2 ? ? E G 5 F C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E G 4 O6 ? ? ? 1_555 F C 10 N4 ? ? E G 5 F C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? E U 5 N3 ? ? ? 1_555 F A 9 N1 ? ? E U 6 F A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? E U 5 O4 ? ? ? 1_555 F A 9 N6 ? ? E U 6 F A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? E G 6 N1 ? ? ? 1_555 F C 8 N3 ? ? E G 7 F C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E G 6 N2 ? ? ? 1_555 F C 8 O2 ? ? E G 7 F C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? E G 6 O6 ? ? ? 1_555 F C 8 N4 ? ? E G 7 F C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? E G 9 N1 ? ? ? 1_555 F C 6 N3 ? ? E G 10 F C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? E G 9 N2 ? ? ? 1_555 F C 6 O2 ? ? E G 10 F C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? E G 9 O6 ? ? ? 1_555 F C 6 N4 ? ? E G 10 F C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? E U 10 N3 ? ? ? 1_555 F U 5 O4 ? ? E U 11 F U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog86 hydrog ? ? E U 10 O2 ? ? ? 1_555 F U 5 N3 ? ? E U 11 F U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog87 hydrog ? ? E C 11 N3 ? ? ? 1_555 F G 4 N1 ? ? E C 12 F G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? E C 11 N4 ? ? ? 1_555 F G 4 O6 ? ? E C 12 F G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? E C 11 O2 ? ? ? 1_555 F G 4 N2 ? ? E C 12 F G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? E G 12 N1 ? ? ? 1_555 F C 3 N3 ? ? E G 13 F C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? E G 12 N2 ? ? ? 1_555 F C 3 O2 ? ? E G 13 F C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? E G 12 O6 ? ? ? 1_555 F C 3 N4 ? ? E G 13 F C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? E C 13 N3 ? ? ? 1_555 F G 2 N1 ? ? E C 14 F G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? E C 13 N4 ? ? ? 1_555 F G 2 O6 ? ? E C 14 F G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? E C 13 O2 ? ? ? 1_555 F G 2 N2 ? ? E C 14 F G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? E G 14 N1 ? ? ? 1_555 F C 1 O2 ? ? E G 15 F C 21 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog97 hydrog ? ? G G 1 N1 ? ? ? 1_555 H C 13 N3 ? ? G G 2 H C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? G G 1 N2 ? ? ? 1_555 H C 13 O2 ? ? G G 2 H C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? G G 1 O6 ? ? ? 1_555 H C 13 N4 ? ? G G 2 H C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? G U 2 N3 ? ? ? 1_555 H A 12 N1 ? ? G U 3 H A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? G U 2 O4 ? ? ? 1_555 H A 12 N6 ? ? G U 3 H A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? G G 3 N1 ? ? ? 1_555 H C 11 N3 ? ? G G 4 H C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? G G 3 N2 ? ? ? 1_555 H C 11 O2 ? ? G G 4 H C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? G G 3 O6 ? ? ? 1_555 H C 11 N4 ? ? G G 4 H C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? G G 4 N1 ? ? ? 1_555 H C 10 N3 ? ? G G 5 H C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? G G 4 N2 ? ? ? 1_555 H C 10 O2 ? ? G G 5 H C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? G G 4 O6 ? ? ? 1_555 H C 10 N4 ? ? G G 5 H C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? G U 5 N3 ? ? ? 1_555 H A 9 N1 ? ? G U 6 H A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? G U 5 O4 ? ? ? 1_555 H A 9 N6 ? ? G U 6 H A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? G G 6 N1 ? ? ? 1_555 H C 8 N3 ? ? G G 7 H C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? G G 6 N2 ? ? ? 1_555 H C 8 O2 ? ? G G 7 H C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? G G 6 O6 ? ? ? 1_555 H C 8 N4 ? ? G G 7 H C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? G G 9 N1 ? ? ? 1_555 H C 6 N3 ? ? G G 10 H C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? G G 9 N2 ? ? ? 1_555 H C 6 O2 ? ? G G 10 H C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? G G 9 O6 ? ? ? 1_555 H C 6 N4 ? ? G G 10 H C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? G U 10 N3 ? ? ? 1_555 H U 5 O4 ? ? G U 11 H U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog117 hydrog ? ? G U 10 O2 ? ? ? 1_555 H U 5 N3 ? ? G U 11 H U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog118 hydrog ? ? G C 11 N3 ? ? ? 1_555 H G 4 N1 ? ? G C 12 H G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? G C 11 N4 ? ? ? 1_555 H G 4 O6 ? ? G C 12 H G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? G C 11 O2 ? ? ? 1_555 H G 4 N2 ? ? G C 12 H G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? G G 12 N1 ? ? ? 1_555 H C 3 N3 ? ? G G 13 H C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? G G 12 N2 ? ? ? 1_555 H C 3 O2 ? ? G G 13 H C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? G G 12 O6 ? ? ? 1_555 H C 3 N4 ? ? G G 13 H C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? G C 13 N3 ? ? ? 1_555 H G 2 N1 ? ? G C 14 H G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? G C 13 N4 ? ? ? 1_555 H G 2 O6 ? ? G C 14 H G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? G C 13 O2 ? ? ? 1_555 H G 2 N2 ? ? G C 14 H G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? G G 14 N1 ? ? ? 1_555 H C 1 N3 ? ? G G 15 H C 21 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 A _pdbx_validate_symm_contact.auth_seq_id_1 9 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O4'" _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 A _pdbx_validate_symm_contact.auth_seq_id_2 32 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_554 _pdbx_validate_symm_contact.dist 1.97 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U C 11 ? ? 0.072 'SIDE CHAIN' 2 1 U D 25 ? ? 0.073 'SIDE CHAIN' 3 1 U E 11 ? ? 0.062 'SIDE CHAIN' 4 1 U G 11 ? ? 0.061 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 U OP3 O N N 114 U P P N N 115 U OP1 O N N 116 U OP2 O N N 117 U "O5'" O N N 118 U "C5'" C N N 119 U "C4'" C N R 120 U "O4'" O N N 121 U "C3'" C N S 122 U "O3'" O N N 123 U "C2'" C N R 124 U "O2'" O N N 125 U "C1'" C N R 126 U N1 N N N 127 U C2 C N N 128 U O2 O N N 129 U N3 N N N 130 U C4 C N N 131 U O4 O N N 132 U C5 C N N 133 U C6 C N N 134 U HOP3 H N N 135 U HOP2 H N N 136 U "H5'" H N N 137 U "H5''" H N N 138 U "H4'" H N N 139 U "H3'" H N N 140 U "HO3'" H N N 141 U "H2'" H N N 142 U "HO2'" H N N 143 U "H1'" H N N 144 U H3 H N N 145 U H5 H N N 146 U H6 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ZX7 'double helix' 1ZX7 'a-form double helix' 1ZX7 'mismatched base pair' 1ZX7 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 1 1_555 A G 14 1_555 0.232 -0.184 -0.286 15.747 -15.112 -4.861 1 B_C21:G15_A B 21 ? A 15 ? 19 1 1 B G 2 1_555 A C 13 1_555 0.687 -0.300 -0.413 -6.196 -21.257 3.577 2 B_G22:C14_A B 22 ? A 14 ? 19 1 1 B C 3 1_555 A G 12 1_555 -0.190 -0.023 0.011 2.854 -5.893 -1.505 3 B_C23:G13_A B 23 ? A 13 ? 19 1 1 B G 4 1_555 A C 11 1_555 -0.011 0.189 -0.750 -23.014 -13.925 10.895 4 B_G24:C12_A B 24 ? A 12 ? 19 1 1 B U 5 1_555 A U 10 1_555 -1.817 -1.927 0.754 1.590 -13.476 8.589 5 B_U25:U11_A B 25 ? A 11 ? 16 1 1 B C 6 1_555 A G 9 1_555 -0.179 -0.372 0.922 3.175 -13.742 -3.455 6 B_C26:G10_A B 26 ? A 10 ? 19 1 1 B C 8 1_555 A G 6 1_555 0.364 -0.137 -0.087 -5.119 -5.280 0.395 7 B_C28:G7_A B 28 ? A 7 ? 19 1 1 B A 9 1_555 A U 5 1_555 -0.244 -0.319 0.561 6.980 -15.059 6.492 8 B_A29:U6_A B 29 ? A 6 ? 20 1 1 B C 10 1_555 A G 4 1_555 0.170 -0.307 0.566 2.752 -6.694 -1.115 9 B_C30:G5_A B 30 ? A 5 ? 19 1 1 B C 11 1_555 A G 3 1_555 0.198 -0.222 -0.393 10.568 -15.620 2.509 10 B_C31:G4_A B 31 ? A 4 ? 19 1 1 B A 12 1_555 A U 2 1_555 0.745 -0.069 -0.227 -5.202 -22.848 -3.685 11 B_A32:U3_A B 32 ? A 3 ? 20 1 1 B C 13 1_555 A G 1 1_555 -0.331 -0.331 0.250 -4.461 -21.183 0.161 12 B_C33:G2_A B 33 ? A 2 ? 19 1 1 B C 14 1_555 G G 15 1_555 0.277 0.163 0.625 7.941 -6.613 6.310 13 B_C34:G16_G B 34 ? G 16 ? 19 1 1 H C 1 1_555 G G 14 1_555 -1.511 0.262 -0.288 13.809 -9.949 8.606 14 H_C21:G15_G H 21 ? G 15 ? ? 1 1 H G 2 1_555 G C 13 1_555 0.283 -0.038 -0.907 -12.192 -9.574 5.288 15 H_G22:C14_G H 22 ? G 14 ? 19 1 1 H C 3 1_555 G G 12 1_555 0.216 0.216 -0.435 5.959 -3.449 3.224 16 H_C23:G13_G H 23 ? G 13 ? 19 1 1 H G 4 1_555 G C 11 1_555 -0.446 0.204 -0.730 -24.925 -5.158 10.721 17 H_G24:C12_G H 24 ? G 12 ? 19 1 1 H U 5 1_555 G U 10 1_555 -1.836 -1.443 0.290 1.905 -17.627 14.632 18 H_U25:U11_G H 25 ? G 11 ? 16 1 1 H C 6 1_555 G G 9 1_555 0.796 -0.178 -0.199 14.291 -22.196 4.112 19 H_C26:G10_G H 26 ? G 10 ? 19 1 1 H C 8 1_555 G G 6 1_555 0.061 -0.134 -0.359 -4.719 -3.316 0.980 20 H_C28:G7_G H 28 ? G 7 ? 19 1 1 H A 9 1_555 G U 5 1_555 -0.496 -0.111 0.102 5.548 -9.653 7.496 21 H_A29:U6_G H 29 ? G 6 ? 20 1 1 H C 10 1_555 G G 4 1_555 0.398 -0.236 -0.030 12.737 -3.403 -1.433 22 H_C30:G5_G H 30 ? G 5 ? 19 1 1 H C 11 1_555 G G 3 1_555 -0.488 -0.117 -0.540 6.928 -7.881 3.720 23 H_C31:G4_G H 31 ? G 4 ? 19 1 1 H A 12 1_555 G U 2 1_555 0.234 -0.047 -0.770 -13.794 -18.989 -5.487 24 H_A32:U3_G H 32 ? G 3 ? 20 1 1 H C 13 1_555 G G 1 1_555 -0.220 -0.218 0.226 -8.283 -19.104 0.691 25 H_C33:G2_G H 33 ? G 2 ? 19 1 1 C G 1 1_555 D C 13 1_555 -0.956 0.109 0.240 1.422 -11.378 9.998 26 C_G2:C33_D C 2 ? D 33 ? ? 1 1 C U 2 1_555 D A 12 1_555 0.547 -0.124 0.152 4.148 -14.070 7.073 27 C_U3:A32_D C 3 ? D 32 ? 20 1 1 C G 3 1_555 D C 11 1_555 -0.493 0.125 0.079 -9.896 -17.009 6.329 28 C_G4:C31_D C 4 ? D 31 ? 19 1 1 C G 4 1_555 D C 10 1_555 -0.233 -0.083 -0.409 -13.248 -17.345 3.622 29 C_G5:C30_D C 5 ? D 30 ? 19 1 1 C U 5 1_555 D A 9 1_555 -0.088 -0.003 -0.094 6.485 -23.827 7.075 30 C_U6:A29_D C 6 ? D 29 ? 20 1 1 C G 6 1_555 D C 8 1_555 -0.365 0.042 0.579 3.252 -16.221 11.899 31 C_G7:C28_D C 7 ? D 28 ? ? 1 1 C G 9 1_555 D C 6 1_555 -0.788 0.101 -0.637 -12.988 -10.938 8.985 32 C_G10:C26_D C 10 ? D 26 ? 19 1 1 C U 10 1_555 D U 5 1_555 2.950 -1.695 -0.383 -5.511 -12.247 10.280 33 C_U11:U25_D C 11 ? D 25 ? 16 1 1 C C 11 1_555 D G 4 1_555 1.092 -0.353 -0.984 13.147 -7.754 9.757 34 C_C12:G24_D C 12 ? D 24 ? 19 1 1 C G 12 1_555 D C 3 1_555 -0.607 0.121 -0.175 -6.105 -4.548 5.635 35 C_G13:C23_D C 13 ? D 23 ? 19 1 1 C C 13 1_555 D G 2 1_555 1.643 0.730 0.328 5.483 -10.152 18.091 36 C_C14:G22_D C 14 ? D 22 ? ? ? 1 C G 14 1_555 D C 1 1_555 -0.356 -0.115 -0.507 -11.586 -5.260 -7.453 37 C_G15:C21_D C 15 ? D 21 ? 19 1 1 C G 15 1_555 F C 14 1_555 -0.154 0.049 -0.237 -5.684 -10.062 -6.099 38 C_G16:C34_F C 16 ? F 34 ? 19 1 1 E G 1 1_555 F C 13 1_555 -0.952 0.002 0.460 -2.545 -21.322 8.260 39 E_G2:C33_F E 2 ? F 33 ? ? 1 1 E U 2 1_555 F A 12 1_555 0.157 -0.227 0.519 0.416 -22.977 3.683 40 E_U3:A32_F E 3 ? F 32 ? 20 1 1 E G 3 1_555 F C 11 1_555 -1.130 -0.328 0.187 -11.504 -23.625 -0.705 41 E_G4:C31_F E 4 ? F 31 ? 19 1 1 E G 4 1_555 F C 10 1_555 0.101 -0.115 0.200 -4.209 -18.651 2.527 42 E_G5:C30_F E 5 ? F 30 ? 19 1 1 E U 5 1_555 F A 9 1_555 -0.652 -0.003 0.422 0.238 -25.305 3.595 43 E_U6:A29_F E 6 ? F 29 ? 20 1 1 E G 6 1_555 F C 8 1_555 -0.770 0.080 0.157 -0.736 -13.877 8.935 44 E_G7:C28_F E 7 ? F 28 ? 19 1 1 E G 9 1_555 F C 6 1_555 0.354 -0.098 0.484 -0.567 3.125 -0.722 45 E_G10:C26_F E 10 ? F 26 ? 19 1 1 E U 10 1_555 F U 5 1_555 2.452 -1.925 0.071 -6.878 -15.002 6.312 46 E_U11:U25_F E 11 ? F 25 ? 16 1 1 E C 11 1_555 F G 4 1_555 0.851 -0.426 -0.623 17.604 -21.501 8.549 47 E_C12:G24_F E 12 ? F 24 ? 19 1 1 E G 12 1_555 F C 3 1_555 -0.128 -0.167 0.704 4.592 -8.500 -0.954 48 E_G13:C23_F E 13 ? F 23 ? 19 1 1 E C 13 1_555 F G 2 1_555 1.029 -0.245 0.636 1.099 -21.196 7.865 49 E_C14:G22_F E 14 ? F 22 ? 19 1 1 E G 14 1_555 F C 1 1_555 -2.904 -0.691 -0.412 -14.375 -10.931 -21.738 50 E_G15:C21_F E 15 ? F 21 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 1 1_555 A G 14 1_555 B G 2 1_555 A C 13 1_555 0.035 -1.411 3.964 -0.078 15.244 36.791 -4.091 -0.062 3.159 22.979 0.118 39.723 1 BB_C21G22:C14G15_AA B 21 ? A 15 ? B 22 ? A 14 ? 1 B G 2 1_555 A C 13 1_555 B C 3 1_555 A G 12 1_555 -0.488 -1.670 3.100 -6.990 0.792 30.584 -3.232 -0.358 3.090 1.478 13.036 31.364 2 BB_G22C23:G13C14_AA B 22 ? A 14 ? B 23 ? A 13 ? 1 B C 3 1_555 A G 12 1_555 B G 4 1_555 A C 11 1_555 1.301 -1.715 3.763 9.772 14.284 28.556 -5.614 -0.477 2.893 26.144 -17.886 33.298 3 BB_C23G24:C12G13_AA B 23 ? A 13 ? B 24 ? A 12 ? 1 B G 4 1_555 A C 11 1_555 B U 5 1_555 A U 10 1_555 -0.277 -1.536 2.608 -14.653 3.276 24.252 -3.721 -2.108 2.194 7.004 31.329 28.465 4 BB_G24U25:U11C12_AA B 24 ? A 12 ? B 25 ? A 11 ? 1 B U 5 1_555 A U 10 1_555 B C 6 1_555 A G 9 1_555 -0.411 -1.211 3.309 -1.164 1.162 44.044 -1.724 0.437 3.287 1.549 1.552 44.073 5 BB_U25C26:G10U11_AA B 25 ? A 11 ? B 26 ? A 10 ? 1 B C 6 1_555 A G 9 1_555 B C 8 1_555 A G 6 1_555 1.192 -3.043 6.123 17.929 12.071 69.627 -3.314 0.093 5.727 10.325 -15.336 72.498 6 BB_C26C28:G7G10_AA B 26 ? A 10 ? B 28 ? A 7 ? 1 B C 8 1_555 A G 6 1_555 B A 9 1_555 A U 5 1_555 0.502 -1.255 2.833 -4.492 8.665 28.333 -3.864 -1.716 2.255 17.074 8.852 29.935 7 BB_C28A29:U6G7_AA B 28 ? A 7 ? B 29 ? A 6 ? 1 B A 9 1_555 A U 5 1_555 B C 10 1_555 A G 4 1_555 -0.664 -1.344 3.349 -2.936 7.825 36.633 -3.101 0.651 3.050 12.255 4.598 37.543 8 BB_A29C30:G5U6_AA B 29 ? A 6 ? B 30 ? A 5 ? 1 B C 10 1_555 A G 4 1_555 B C 11 1_555 A G 3 1_555 0.895 -1.900 2.900 11.113 4.744 26.674 -4.685 0.384 2.681 9.675 -22.668 29.238 9 BB_C30C31:G4G5_AA B 30 ? A 5 ? B 31 ? A 4 ? 1 B C 11 1_555 A G 3 1_555 B A 12 1_555 A U 2 1_555 -0.337 -1.293 3.438 0.197 23.593 36.456 -3.954 0.476 2.237 33.729 -0.281 43.206 10 BB_C31A32:U3G4_AA B 31 ? A 4 ? B 32 ? A 3 ? 1 B A 12 1_555 A U 2 1_555 B C 13 1_555 A G 1 1_555 0.791 -1.522 3.050 0.034 -0.548 34.913 -2.459 -1.314 3.074 -0.913 -0.056 34.917 11 BB_A32C33:G2U3_AA B 32 ? A 3 ? B 33 ? A 2 ? 1 B C 13 1_555 A G 1 1_555 B C 14 1_555 G G 15 1_555 -0.478 -2.052 3.096 -5.471 4.087 25.842 -5.414 -0.268 2.785 8.942 11.969 26.715 12 BB_C33C34:G16G2_GA B 33 ? A 2 ? B 34 ? G 16 ? 1 B C 14 1_555 G G 15 1_555 H C 1 1_555 G G 14 1_555 0.447 -1.812 2.771 6.940 8.311 23.599 -5.821 0.494 2.070 19.087 -15.938 25.932 13 BH_C34C21:G15G16_GG B 34 ? G 16 ? H 21 ? G 15 ? 1 H C 1 1_555 G G 14 1_555 H G 2 1_555 G C 13 1_555 -0.165 -1.693 4.066 -0.180 13.549 34.723 -4.733 0.231 3.207 21.706 0.288 37.197 14 HH_C21G22:C14G15_GG H 21 ? G 15 ? H 22 ? G 14 ? 1 H G 2 1_555 G C 13 1_555 H C 3 1_555 G G 12 1_555 -0.313 -2.190 2.866 -4.978 1.744 28.098 -4.779 -0.343 2.741 3.552 10.139 28.579 15 HH_G22C23:G13C14_GG H 22 ? G 14 ? H 23 ? G 13 ? 1 H C 3 1_555 G G 12 1_555 H G 4 1_555 G C 11 1_555 1.089 -1.906 4.068 6.018 8.683 25.063 -6.656 -0.517 3.396 18.968 -13.147 27.166 16 HH_C23G24:C12G13_GG H 23 ? G 13 ? H 24 ? G 12 ? 1 H G 4 1_555 G C 11 1_555 H U 5 1_555 G U 10 1_555 0.272 -1.515 2.682 -8.700 4.935 22.729 -4.659 -2.630 2.069 11.813 20.827 24.806 17 HH_G24U25:U11C12_GG H 24 ? G 12 ? H 25 ? G 11 ? 1 H U 5 1_555 G U 10 1_555 H C 6 1_555 G G 9 1_555 -0.393 -0.775 2.984 3.131 1.140 45.626 -1.087 0.753 2.933 1.468 -4.031 45.741 18 HH_U25C26:G10U11_GG H 25 ? G 11 ? H 26 ? G 10 ? 1 H C 6 1_555 G G 9 1_555 H C 8 1_555 G G 6 1_555 1.598 -2.598 6.343 17.609 20.268 67.055 -3.539 -0.219 5.684 17.642 -15.328 71.643 19 HH_C26C28:G7G10_GG H 26 ? G 10 ? H 28 ? G 7 ? 1 H C 8 1_555 G G 6 1_555 H A 9 1_555 G U 5 1_555 0.224 -1.277 2.927 -6.980 15.231 29.846 -4.111 -1.269 1.967 27.056 12.399 34.133 20 HH_C28A29:U6G7_GG H 28 ? G 7 ? H 29 ? G 6 ? 1 H A 9 1_555 G U 5 1_555 H C 10 1_555 G G 4 1_555 -0.911 -1.355 3.087 -2.599 6.836 34.993 -3.113 1.141 2.838 11.218 4.264 35.726 21 HH_A29C30:G5U6_GG H 29 ? G 6 ? H 30 ? G 5 ? 1 H C 10 1_555 G G 4 1_555 H C 11 1_555 G G 3 1_555 0.587 -1.621 3.190 3.651 10.589 30.076 -4.663 -0.467 2.540 19.572 -6.748 32.048 22 HH_C30C31:G4G5_GG H 30 ? G 5 ? H 31 ? G 4 ? 1 H C 11 1_555 G G 3 1_555 H A 12 1_555 G U 2 1_555 -0.669 -1.446 3.905 0.104 16.919 31.552 -5.033 1.108 2.793 28.680 -0.176 35.700 23 HH_C31A32:U3G4_GG H 31 ? G 4 ? H 32 ? G 3 ? 1 H A 12 1_555 G U 2 1_555 H C 13 1_555 G G 1 1_555 0.993 -1.589 2.949 -2.850 1.885 36.524 -2.752 -1.920 2.784 2.999 4.534 36.678 24 HH_A32C33:G2U3_GG H 32 ? G 3 ? H 33 ? G 2 ? 1 C G 1 1_555 D C 13 1_555 C U 2 1_555 D A 12 1_555 -0.728 -1.363 3.209 -1.743 1.473 36.628 -2.362 0.923 3.184 2.341 2.770 36.697 25 CC_G2U3:A32C33_DD C 2 ? D 33 ? C 3 ? D 32 ? 1 C U 2 1_555 D A 12 1_555 C G 3 1_555 D C 11 1_555 0.247 -1.492 3.443 2.088 7.777 30.569 -4.185 -0.066 2.992 14.439 -3.877 31.587 26 CC_U3G4:C31A32_DD C 3 ? D 32 ? C 4 ? D 31 ? 1 C G 3 1_555 D C 11 1_555 C G 4 1_555 D C 10 1_555 -0.206 -1.440 3.249 4.461 11.470 33.209 -3.930 0.946 2.578 19.264 -7.493 35.356 27 CC_G4G5:C30C31_DD C 4 ? D 31 ? C 5 ? D 30 ? 1 C G 4 1_555 D C 10 1_555 C U 5 1_555 D A 9 1_555 0.307 -0.946 2.783 0.367 5.337 30.559 -2.620 -0.515 2.588 10.029 -0.690 31.013 28 CC_G5U6:A29C30_DD C 5 ? D 30 ? C 6 ? D 29 ? 1 C U 5 1_555 D A 9 1_555 C G 6 1_555 D C 8 1_555 0.870 -1.271 3.000 -2.403 14.577 29.403 -4.305 -1.878 2.080 26.700 4.402 32.833 29 CC_U6G7:C28A29_DD C 6 ? D 29 ? C 7 ? D 28 ? 1 C G 6 1_555 D C 8 1_555 C G 9 1_555 D C 6 1_555 -1.545 -2.913 6.418 -0.413 12.442 72.642 -3.189 1.265 5.932 10.428 0.346 73.556 30 CC_G7G10:C26C28_DD C 7 ? D 28 ? C 10 ? D 26 ? 1 C G 9 1_555 D C 6 1_555 C U 10 1_555 D U 5 1_555 -0.052 -0.831 3.158 -0.792 11.075 48.458 -1.756 0.007 2.914 13.291 0.951 49.639 31 CC_G10U11:U25C26_DD C 10 ? D 26 ? C 11 ? D 25 ? 1 C U 10 1_555 D U 5 1_555 C C 11 1_555 D G 4 1_555 0.348 -1.786 2.635 9.898 6.611 18.510 -6.585 1.933 1.846 18.302 -27.401 21.979 32 CC_U11C12:G24U25_DD C 11 ? D 25 ? C 12 ? D 24 ? 1 C C 11 1_555 D G 4 1_555 C G 12 1_555 D C 3 1_555 -1.105 -1.571 4.030 -6.141 5.759 24.581 -5.436 0.394 3.734 13.047 13.913 25.961 33 CC_C12G13:C23G24_DD C 12 ? D 24 ? C 13 ? D 23 ? 1 C G 12 1_555 D C 3 1_555 C C 13 1_555 D G 2 1_555 1.333 -1.797 2.991 -1.472 0.517 34.429 -3.105 -2.456 2.907 0.873 2.486 34.463 34 CC_G13C14:G22C23_DD C 13 ? D 23 ? C 14 ? D 22 ? 1 C C 13 1_555 D G 2 1_555 C G 14 1_555 D C 1 1_555 -2.196 -2.720 3.355 2.666 13.084 21.940 -8.964 5.527 1.280 30.961 -6.309 25.641 35 CC_C14G15:C21G22_DD C 14 ? D 22 ? C 15 ? D 21 ? 1 C G 14 1_555 D C 1 1_555 C G 15 1_555 F C 14 1_555 0.984 -1.924 3.159 0.787 7.489 33.763 -4.287 -1.545 2.705 12.699 -1.335 34.569 36 CC_G15G16:C34C21_FD C 15 ? D 21 ? C 16 ? F 34 ? 1 C G 15 1_555 F C 14 1_555 E G 1 1_555 F C 13 1_555 1.013 -2.408 3.254 -1.548 7.834 22.468 -8.047 -2.891 2.224 19.338 3.821 23.828 37 CE_G16G2:C33C34_FF C 16 ? F 34 ? E 2 ? F 33 ? 1 E G 1 1_555 F C 13 1_555 E U 2 1_555 F A 12 1_555 -0.696 -1.394 3.147 -3.040 1.740 35.429 -2.524 0.714 3.124 2.850 4.980 35.596 38 EE_G2U3:A32C33_FF E 2 ? F 33 ? E 3 ? F 32 ? 1 E U 2 1_555 F A 12 1_555 E G 3 1_555 F C 11 1_555 -0.059 -1.438 3.221 -0.398 12.582 34.076 -3.918 0.044 2.550 20.618 0.652 36.262 39 EE_U3G4:C31A32_FF E 3 ? F 32 ? E 4 ? F 31 ? 1 E G 3 1_555 F C 11 1_555 E G 4 1_555 F C 10 1_555 -0.253 -1.868 3.144 -2.168 6.824 31.207 -4.503 0.104 2.697 12.481 3.965 31.998 40 EE_G4G5:C30C31_FF E 4 ? F 31 ? E 5 ? F 30 ? 1 E G 4 1_555 F C 10 1_555 E U 5 1_555 F A 9 1_555 0.138 -1.130 3.054 -0.040 5.221 29.942 -3.104 -0.270 2.821 10.009 0.077 30.384 41 EE_G5U6:A29C30_FF E 5 ? F 30 ? E 6 ? F 29 ? 1 E U 5 1_555 F A 9 1_555 E G 6 1_555 F C 8 1_555 0.424 -1.261 2.986 0.447 14.614 30.720 -4.111 -0.666 2.185 25.830 -0.790 33.947 42 EE_U6G7:C28A29_FF E 6 ? F 29 ? E 7 ? F 28 ? 1 E G 6 1_555 F C 8 1_555 E G 9 1_555 F C 6 1_555 -1.104 -3.118 6.159 -9.070 1.944 73.585 -2.703 0.377 6.169 1.617 7.543 74.085 43 EE_G7G10:C26C28_FF E 7 ? F 28 ? E 10 ? F 26 ? 1 E G 9 1_555 F C 6 1_555 E U 10 1_555 F U 5 1_555 0.159 -1.507 3.650 6.913 11.389 44.131 -2.975 0.432 3.178 14.763 -8.960 46.002 44 EE_G10U11:U25C26_FF E 10 ? F 26 ? E 11 ? F 25 ? 1 E U 10 1_555 F U 5 1_555 E C 11 1_555 F G 4 1_555 0.861 -1.601 2.385 13.374 5.774 24.568 -4.234 0.529 2.139 12.285 -28.457 28.504 45 EE_U11C12:G24U25_FF E 11 ? F 25 ? E 12 ? F 24 ? 1 E C 11 1_555 F G 4 1_555 E G 12 1_555 F C 3 1_555 -1.522 -1.423 3.505 -11.982 10.637 26.616 -4.908 0.321 3.118 20.875 23.513 30.992 46 EE_C12G13:C23G24_FF E 12 ? F 24 ? E 13 ? F 23 ? 1 E G 12 1_555 F C 3 1_555 E C 13 1_555 F G 2 1_555 1.230 -1.527 3.495 2.760 -0.697 37.429 -2.274 -1.521 3.600 -1.085 -4.293 37.533 47 EE_G13C14:G22C23_FF E 13 ? F 23 ? E 14 ? F 22 ? 1 E C 13 1_555 F G 2 1_555 E G 14 1_555 F C 1 1_555 -1.809 -2.093 3.262 1.179 15.888 24.205 -7.019 3.833 1.534 33.627 -2.495 28.912 48 EE_C14G15:C21G22_FF E 14 ? F 22 ? E 15 ? F 21 ? # _atom_sites.entry_id 1ZX7 _atom_sites.fract_transf_matrix[1][1] 0.030628 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000053 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006527 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030544 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_