HEADER SIGNALING PROTEIN 08-JUN-05 1ZXT TITLE CRYSTAL STRUCTURE OF A VIRAL CHEMOKINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUNCTIONAL MACROPHAGE INFLAMMATORY PROTEIN 1-ALPHA HOMOLOG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ORF K6, VMIP-I; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 3 ORGANISM_TAXID: 37296; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PBLUEBAC2 KEYWDS CHEMOKINE FOLD, GREEK KEY MOTIF, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.G.LUZ,M.YU,Y.SU,Z.WU,Z.ZHOU,R.SUN,I.A.WILSON REVDAT 6 13-NOV-24 1ZXT 1 REMARK REVDAT 5 23-AUG-23 1ZXT 1 SEQADV REVDAT 4 13-JUL-11 1ZXT 1 VERSN REVDAT 3 16-MAR-10 1ZXT 1 JRNL REVDAT 2 24-FEB-09 1ZXT 1 VERSN REVDAT 1 30-AUG-05 1ZXT 0 JRNL AUTH J.G.LUZ,M.YU,Y.SU,Z.WU,Z.ZHOU,R.SUN,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF VIRAL MACROPHAGE INFLAMMATORY PROTEIN I JRNL TITL 2 ENCODED BY KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS AT 1.7A. JRNL REF J.MOL.BIOL. V. 352 1019 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16140327 JRNL DOI 10.1016/J.JMB.2005.08.011 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 26039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : -0.06000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2296 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2048 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3148 ; 1.957 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4816 ; 0.987 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 7.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;36.085 ;22.609 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 360 ;15.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.444 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2476 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 428 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 414 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2022 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1281 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 154 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.110 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 77 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1734 ; 2.389 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 532 ; 0.477 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2316 ; 2.501 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1053 ; 4.226 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 832 ; 5.212 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2750 8.0320 75.9030 REMARK 3 T TENSOR REMARK 3 T11: -0.0832 T22: -0.0714 REMARK 3 T33: -0.2324 T12: -0.0018 REMARK 3 T13: -0.0565 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.9641 L22: 4.8461 REMARK 3 L33: 5.1584 L12: 1.2034 REMARK 3 L13: -0.0187 L23: -0.5715 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: -0.1164 S13: -0.0273 REMARK 3 S21: 0.5719 S22: -0.1084 S23: 0.0147 REMARK 3 S31: 0.0729 S32: -0.0801 S33: -0.0252 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 73 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2090 5.9250 54.8100 REMARK 3 T TENSOR REMARK 3 T11: -0.2186 T22: -0.0903 REMARK 3 T33: -0.1915 T12: 0.0217 REMARK 3 T13: -0.0392 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 5.1085 L22: 4.0601 REMARK 3 L33: 1.9792 L12: 0.9699 REMARK 3 L13: -1.4334 L23: -0.2056 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: 0.2492 S13: -0.3047 REMARK 3 S21: -0.0788 S22: 0.0507 S23: -0.1935 REMARK 3 S31: 0.1284 S32: -0.0937 S33: 0.0818 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 73 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0850 23.8590 53.1550 REMARK 3 T TENSOR REMARK 3 T11: -0.2301 T22: -0.1064 REMARK 3 T33: -0.1765 T12: 0.0089 REMARK 3 T13: -0.0392 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 4.2307 L22: 5.1103 REMARK 3 L33: 1.8464 L12: -0.5644 REMARK 3 L13: -0.4970 L23: -0.1056 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: 0.0729 S13: 0.0930 REMARK 3 S21: 0.0445 S22: 0.0453 S23: 0.2267 REMARK 3 S31: -0.0656 S32: 0.0204 S33: 0.0416 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 73 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0530 21.1850 31.6330 REMARK 3 T TENSOR REMARK 3 T11: -0.0170 T22: -0.0128 REMARK 3 T33: -0.2130 T12: -0.0409 REMARK 3 T13: -0.0412 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.0439 L22: 6.6557 REMARK 3 L33: 8.6320 L12: 0.8120 REMARK 3 L13: 0.8371 L23: 4.7480 REMARK 3 S TENSOR REMARK 3 S11: -0.1525 S12: 0.0190 S13: -0.1007 REMARK 3 S21: -0.4151 S22: 0.2084 S23: -0.1268 REMARK 3 S31: -0.3583 S32: 0.3466 S33: -0.0559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. CNS IS ALSO USED FOR REFINEMENT. REMARK 4 REMARK 4 1ZXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28953 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 10MG/ML PROTEIN: MOTHER LIQUOR REMARK 280 (1.2M NACL,0.1M NAOAC PH5.5, 22OC), VAPOR DIFFUSION, SITTING REMARK 280 DROPS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 HIS A 74 REMARK 465 HIS A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 HIS B 74 REMARK 465 HIS B 75 REMARK 465 HIS B 76 REMARK 465 HIS B 77 REMARK 465 GLY C 2 REMARK 465 SER C 3 REMARK 465 LEU C 4 REMARK 465 HIS C 74 REMARK 465 HIS C 75 REMARK 465 HIS C 76 REMARK 465 HIS C 77 REMARK 465 GLY D 2 REMARK 465 SER D 3 REMARK 465 LEU D 4 REMARK 465 HIS D 74 REMARK 465 HIS D 75 REMARK 465 HIS D 76 REMARK 465 HIS D 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 14 OH TYR D 14 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 28 CD GLU A 28 OE1 -0.077 REMARK 500 ARG C 47 NE ARG C 47 CZ -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP C 54 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 7 37.80 -89.69 REMARK 500 SER C 6 -103.70 -17.06 REMARK 500 TYR C 7 172.82 54.23 REMARK 500 SER D 6 -175.79 -60.12 REMARK 500 TYR D 7 -115.66 -133.62 REMARK 500 TYR D 14 69.11 -105.43 REMARK 500 HIS D 72 110.81 -27.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 1ZXT A 2 71 UNP Q98158 Q98158_HHV8 26 95 DBREF 1ZXT B 2 71 UNP Q98158 Q98158_HHV8 26 95 DBREF 1ZXT C 2 71 UNP Q98158 Q98158_HHV8 26 95 DBREF 1ZXT D 2 71 UNP Q98158 Q98158_HHV8 26 95 SEQADV 1ZXT HIS A 72 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS A 73 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS A 74 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS A 75 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS A 76 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS A 77 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS B 72 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS B 73 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS B 74 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS B 75 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS B 76 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS B 77 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS C 72 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS C 73 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS C 74 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS C 75 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS C 76 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS C 77 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS D 72 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS D 73 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS D 74 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS D 75 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS D 76 UNP Q98158 EXPRESSION TAG SEQADV 1ZXT HIS D 77 UNP Q98158 EXPRESSION TAG SEQRES 1 A 76 GLY SER LEU VAL SER TYR THR PRO ASN SER CYS CYS TYR SEQRES 2 A 76 GLY PHE GLN GLN HIS PRO PRO PRO VAL GLN ILE LEU LYS SEQRES 3 A 76 GLU TRP TYR PRO THR SER PRO ALA CYS PRO LYS PRO GLY SEQRES 4 A 76 VAL ILE LEU LEU THR LYS ARG GLY ARG GLN ILE CYS ALA SEQRES 5 A 76 ASP PRO SER LYS ASN TRP VAL ARG GLN LEU MET GLN ARG SEQRES 6 A 76 LEU PRO ALA ILE ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 76 GLY SER LEU VAL SER TYR THR PRO ASN SER CYS CYS TYR SEQRES 2 B 76 GLY PHE GLN GLN HIS PRO PRO PRO VAL GLN ILE LEU LYS SEQRES 3 B 76 GLU TRP TYR PRO THR SER PRO ALA CYS PRO LYS PRO GLY SEQRES 4 B 76 VAL ILE LEU LEU THR LYS ARG GLY ARG GLN ILE CYS ALA SEQRES 5 B 76 ASP PRO SER LYS ASN TRP VAL ARG GLN LEU MET GLN ARG SEQRES 6 B 76 LEU PRO ALA ILE ALA HIS HIS HIS HIS HIS HIS SEQRES 1 C 76 GLY SER LEU VAL SER TYR THR PRO ASN SER CYS CYS TYR SEQRES 2 C 76 GLY PHE GLN GLN HIS PRO PRO PRO VAL GLN ILE LEU LYS SEQRES 3 C 76 GLU TRP TYR PRO THR SER PRO ALA CYS PRO LYS PRO GLY SEQRES 4 C 76 VAL ILE LEU LEU THR LYS ARG GLY ARG GLN ILE CYS ALA SEQRES 5 C 76 ASP PRO SER LYS ASN TRP VAL ARG GLN LEU MET GLN ARG SEQRES 6 C 76 LEU PRO ALA ILE ALA HIS HIS HIS HIS HIS HIS SEQRES 1 D 76 GLY SER LEU VAL SER TYR THR PRO ASN SER CYS CYS TYR SEQRES 2 D 76 GLY PHE GLN GLN HIS PRO PRO PRO VAL GLN ILE LEU LYS SEQRES 3 D 76 GLU TRP TYR PRO THR SER PRO ALA CYS PRO LYS PRO GLY SEQRES 4 D 76 VAL ILE LEU LEU THR LYS ARG GLY ARG GLN ILE CYS ALA SEQRES 5 D 76 ASP PRO SER LYS ASN TRP VAL ARG GLN LEU MET GLN ARG SEQRES 6 D 76 LEU PRO ALA ILE ALA HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *229(H2 O) HELIX 1 1 PRO A 22 GLN A 24 5 3 HELIX 2 2 LYS A 57 ARG A 66 1 10 HELIX 3 3 PRO B 22 GLN B 24 5 3 HELIX 4 4 LYS B 57 LEU B 67 1 11 HELIX 5 5 PRO C 22 GLN C 24 5 3 HELIX 6 6 LYS C 57 ARG C 66 1 10 HELIX 7 7 PRO D 22 GLN D 24 5 3 HELIX 8 8 LYS D 57 ARG D 66 1 10 SHEET 1 A 2 ASN A 10 CYS A 12 0 SHEET 2 A 2 ASN B 10 CYS B 12 -1 O CYS B 12 N ASN A 10 SHEET 1 B 3 LEU A 26 PRO A 31 0 SHEET 2 B 3 VAL A 41 THR A 45 -1 O ILE A 42 N TYR A 30 SHEET 3 B 3 GLN A 50 ALA A 53 -1 O ALA A 53 N VAL A 41 SHEET 1 C 3 LEU B 26 PRO B 31 0 SHEET 2 C 3 VAL B 41 THR B 45 -1 O ILE B 42 N TYR B 30 SHEET 3 C 3 GLN B 50 ALA B 53 -1 O ILE B 51 N LEU B 43 SHEET 1 D 2 ASN C 10 CYS C 12 0 SHEET 2 D 2 ASN D 10 CYS D 12 -1 O ASN D 10 N CYS C 12 SHEET 1 E 3 LEU C 26 PRO C 31 0 SHEET 2 E 3 VAL C 41 THR C 45 -1 O LEU C 44 N LYS C 27 SHEET 3 E 3 GLN C 50 ALA C 53 -1 O ALA C 53 N VAL C 41 SHEET 1 F 3 LEU D 26 PRO D 31 0 SHEET 2 F 3 VAL D 41 THR D 45 -1 O ILE D 42 N TYR D 30 SHEET 3 F 3 GLN D 50 ALA D 53 -1 O ILE D 51 N LEU D 43 SSBOND 1 CYS A 12 CYS A 36 1555 1555 2.03 SSBOND 2 CYS A 13 CYS A 52 1555 1555 2.08 SSBOND 3 CYS B 12 CYS B 36 1555 1555 2.06 SSBOND 4 CYS B 13 CYS B 52 1555 1555 2.04 SSBOND 5 CYS C 12 CYS C 36 1555 1555 2.01 SSBOND 6 CYS C 13 CYS C 52 1555 1555 2.03 SSBOND 7 CYS D 12 CYS D 36 1555 1555 2.02 SSBOND 8 CYS D 13 CYS D 52 1555 1555 2.06 CRYST1 34.452 40.636 55.092 83.54 89.68 79.19 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029026 -0.005542 0.000470 0.00000 SCALE2 0.000000 0.025053 -0.002861 0.00000 SCALE3 0.000000 0.000000 0.018270 0.00000