HEADER TRANSCRIPTION REGULATOR 09-JUN-05 1ZYB TITLE CRYSTAL STRUCTURE OF TRANSCRIPTION REGULATOR FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 AT 2.15 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION REGULATOR, CRP FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: NP_813211.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NP_813211.1, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, TRANSCRIPTION KEYWDS 3 REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 13-NOV-24 1ZYB 1 REMARK REVDAT 6 25-JAN-23 1ZYB 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 1ZYB 1 REMARK REVDAT 4 13-JUL-11 1ZYB 1 VERSN REVDAT 3 24-FEB-09 1ZYB 1 VERSN REVDAT 2 03-OCT-06 1ZYB 1 JRNL TITLE REVDAT 1 19-JUL-05 1ZYB 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTION REGULATOR FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.15 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1808 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1863 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.33000 REMARK 3 B22 (A**2) : -1.33000 REMARK 3 B33 (A**2) : 1.99000 REMARK 3 B12 (A**2) : -0.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2000 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1825 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2700 ; 1.406 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4272 ; 0.781 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 229 ; 5.560 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;35.444 ;24.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;12.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.613 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2116 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 377 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1741 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 945 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1223 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 142 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 103 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1262 ; 2.395 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 462 ; 0.529 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1914 ; 3.226 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 897 ; 5.604 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 786 ; 7.474 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -9 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): -23.4662 43.9930 1.7133 REMARK 3 T TENSOR REMARK 3 T11: -0.1211 T22: 0.0545 REMARK 3 T33: -0.0891 T12: -0.0239 REMARK 3 T13: -0.0332 T23: 0.1586 REMARK 3 L TENSOR REMARK 3 L11: 1.3136 L22: 1.6663 REMARK 3 L33: 0.2588 L12: 0.9782 REMARK 3 L13: -0.5254 L23: -0.1776 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: -0.2061 S13: -0.0828 REMARK 3 S21: 0.1045 S22: 0.0442 S23: 0.0182 REMARK 3 S31: -0.0197 S32: 0.1377 S33: 0.0114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.7 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. THERE EXISTS A PARTIAL DISULFIDE BOND BETWEEN REMARK 3 CYS 53 AND CYS 109. REMARK 4 REMARK 4 1ZYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979094, 0.918381 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE-CRYSTAL MONOCHROMATOR (SI REMARK 200 111), TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28282 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.08800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.76600 REMARK 200 R SYM FOR SHELL (I) : 0.76600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0M NAFORMATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, NANODROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.75933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.87967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.81950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.93983 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.69917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.75933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 39.87967 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.93983 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.81950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 99.69917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -57.99000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 100.44163 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.93983 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 339 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -9 OG REMARK 470 LYS A 28 CE NZ REMARK 470 LYS A 67 CD CE NZ REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 218 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 7 -82.61 -129.31 REMARK 500 GLU A 84 60.79 38.44 REMARK 500 ASP A 118 -66.62 -107.65 REMARK 500 PRO A 167 46.48 -90.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 227 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 358851 RELATED DB: TARGETDB DBREF 1ZYB A 1 220 GB 29349708 NP_813211 1 220 SEQADV 1ZYB MSE A -11 GB 29349708 EXPRESSION TAG SEQADV 1ZYB GLY A -10 GB 29349708 EXPRESSION TAG SEQADV 1ZYB SER A -9 GB 29349708 EXPRESSION TAG SEQADV 1ZYB ASP A -8 GB 29349708 EXPRESSION TAG SEQADV 1ZYB LYS A -7 GB 29349708 EXPRESSION TAG SEQADV 1ZYB ILE A -6 GB 29349708 EXPRESSION TAG SEQADV 1ZYB HIS A -5 GB 29349708 EXPRESSION TAG SEQADV 1ZYB HIS A -4 GB 29349708 EXPRESSION TAG SEQADV 1ZYB HIS A -3 GB 29349708 EXPRESSION TAG SEQADV 1ZYB HIS A -2 GB 29349708 EXPRESSION TAG SEQADV 1ZYB HIS A -1 GB 29349708 EXPRESSION TAG SEQADV 1ZYB HIS A 0 GB 29349708 EXPRESSION TAG SEQADV 1ZYB MSE A 1 GB 29349708 MET 1 MODIFIED RESIDUE SEQADV 1ZYB MSE A 4 GB 29349708 MET 4 MODIFIED RESIDUE SEQADV 1ZYB MSE A 91 GB 29349708 MET 91 MODIFIED RESIDUE SEQADV 1ZYB MSE A 130 GB 29349708 MET 130 MODIFIED RESIDUE SEQADV 1ZYB MSE A 177 GB 29349708 MET 177 MODIFIED RESIDUE SEQRES 1 A 232 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 232 GLU THR MSE PHE ASP THR LEU LEU GLN LEU PRO LEU PHE SEQRES 3 A 232 GLN GLY LEU CYS HIS GLU ASP PHE THR SER ILE LEU ASP SEQRES 4 A 232 LYS VAL LYS LEU HIS PHE ILE LYS HIS LYS ALA GLY GLU SEQRES 5 A 232 THR ILE ILE LYS SER GLY ASN PRO CYS THR GLN LEU CYS SEQRES 6 A 232 PHE LEU LEU LYS GLY GLU ILE SER ILE VAL THR ASN ALA SEQRES 7 A 232 LYS GLU ASN ILE TYR THR VAL ILE GLU GLN ILE GLU ALA SEQRES 8 A 232 PRO TYR LEU ILE GLU PRO GLN SER LEU PHE GLY MSE ASN SEQRES 9 A 232 THR ASN TYR ALA SER SER TYR VAL ALA HIS THR GLU VAL SEQRES 10 A 232 HIS THR VAL CYS ILE SER LYS ALA PHE VAL LEU SER ASP SEQRES 11 A 232 LEU PHE ARG TYR ASP ILE PHE ARG LEU ASN TYR MSE ASN SEQRES 12 A 232 ILE VAL SER ASN ARG ALA GLN ASN LEU TYR SER ARG LEU SEQRES 13 A 232 TRP ASP GLU PRO THR LEU ASP LEU LYS SER LYS ILE ILE SEQRES 14 A 232 ARG PHE PHE LEU SER HIS CYS GLU LYS PRO GLN GLY GLU SEQRES 15 A 232 LYS THR PHE LYS VAL LYS MSE ASP ASP LEU ALA ARG CYS SEQRES 16 A 232 LEU ASP ASP THR ARG LEU ASN ILE SER LYS THR LEU ASN SEQRES 17 A 232 GLU LEU GLN ASP ASN GLY LEU ILE GLU LEU HIS ARG LYS SEQRES 18 A 232 GLU ILE LEU ILE PRO ASP ALA GLN LYS LEU LEU MODRES 1ZYB MSE A 1 MET SELENOMETHIONINE MODRES 1ZYB MSE A 4 MET SELENOMETHIONINE MODRES 1ZYB MSE A 91 MET SELENOMETHIONINE MODRES 1ZYB MSE A 130 MET SELENOMETHIONINE MODRES 1ZYB MSE A 177 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 4 8 HET MSE A 91 8 HET MSE A 130 8 HET MSE A 177 8 HET GOL A 221 6 HET GOL A 222 6 HET GOL A 223 6 HET GOL A 224 6 HET GOL A 225 6 HET GOL A 226 6 HET GOL A 227 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 GOL 7(C3 H8 O3) FORMUL 9 HOH *187(H2 O) HELIX 1 1 HIS A -4 ASP A 6 1 11 HELIX 2 2 THR A 7 GLN A 15 5 9 HELIX 3 3 CYS A 18 LYS A 28 1 11 HELIX 4 4 LYS A 67 ILE A 70 5 4 HELIX 5 5 GLU A 84 PHE A 89 5 6 HELIX 6 6 LYS A 112 ASP A 118 1 7 HELIX 7 7 LEU A 119 ARG A 121 5 3 HELIX 8 8 TYR A 122 LEU A 144 1 23 HELIX 9 9 ASP A 151 SER A 162 1 12 HELIX 10 10 LYS A 176 ASP A 185 1 10 HELIX 11 11 THR A 187 ASN A 201 1 15 HELIX 12 12 ASP A 215 LEU A 220 5 6 SHEET 1 A 4 HIS A 32 HIS A 36 0 SHEET 2 A 4 VAL A 105 SER A 111 -1 O VAL A 105 N HIS A 36 SHEET 3 A 4 GLN A 51 LYS A 57 -1 N LEU A 52 O ILE A 110 SHEET 4 A 4 TYR A 81 ILE A 83 -1 O TYR A 81 N LEU A 55 SHEET 1 B 7 THR A 41 ILE A 43 0 SHEET 2 B 7 SER A 98 ALA A 101 -1 O TYR A 99 N ILE A 43 SHEET 3 B 7 GLU A 59 ASN A 65 -1 N VAL A 63 O SER A 98 SHEET 4 B 7 THR A 72 GLU A 78 -1 O GLU A 75 N ILE A 62 SHEET 5 B 7 LYS A 171 LYS A 174 -1 O LYS A 174 N THR A 72 SHEET 6 B 7 GLU A 210 ILE A 213 -1 O ILE A 213 N LYS A 171 SHEET 7 B 7 GLU A 205 HIS A 207 -1 N HIS A 207 O GLU A 210 SSBOND 1 CYS A 53 CYS A 109 1555 1555 2.06 LINK C HIS A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C THR A 3 N MSE A 4 1555 1555 1.33 LINK C MSE A 4 N PHE A 5 1555 1555 1.32 LINK C GLY A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N ASN A 92 1555 1555 1.33 LINK C TYR A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N ASN A 131 1555 1555 1.32 LINK C LYS A 176 N MSE A 177 1555 1555 1.31 LINK C MSE A 177 N ASP A 178 1555 1555 1.33 CISPEP 1 ALA A 79 PRO A 80 0 -5.17 SITE 1 AC1 5 THR A 64 ASN A 65 ALA A 96 TRP A 145 SITE 2 AC1 5 HOH A 237 SITE 1 AC2 4 HIS A 36 ILE A 42 ILE A 43 GLN A 51 SITE 1 AC3 5 HIS A -2 MSE A 1 GLU A 2 PHE A 5 SITE 2 AC3 5 HOH A 379 SITE 1 AC4 5 HIS A -1 LYS A -7 HIS A 0 THR A 3 SITE 2 AC4 5 HOH A 388 SITE 1 AC5 6 VAL A 175 MSE A 177 HIS A 207 LYS A 209 SITE 2 AC5 6 GLU A 210 HOH A 311 SITE 1 AC6 8 PHE A 114 SER A 117 ASP A 118 LEU A 206 SITE 2 AC6 8 HIS A 207 HOH A 326 HOH A 372 HOH A 381 SITE 1 AC7 9 ARG A 136 ASN A 139 LEU A 140 TYR A 141 SITE 2 AC7 9 ARG A 143 SER A 162 CYS A 164 GLU A 165 SITE 3 AC7 9 HOH A 354 CRYST1 115.980 115.980 119.639 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008620 0.004980 0.000000 0.00000 SCALE2 0.000000 0.009960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008360 0.00000