HEADER OXIDOREDUCTASE 13-JUN-05 1ZZ8 TITLE CRYSTAL STRUCTURE OF FEII HPPE IN COMPLEX WITH SUBSTRATE FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 1.14.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES WEDMORENSIS; SOURCE 3 ORGANISM_TAXID: 43759; SOURCE 4 GENE: FOM4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS SUBSTRATE-ENZYME COMPLEX, CUPIN, MONONUCLEAR IRON ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.HIGGINS,F.YAN,P.LIU,H.W.LIU,C.L.DRENNAN REVDAT 5 23-AUG-23 1ZZ8 1 REMARK LINK REVDAT 4 13-JUL-11 1ZZ8 1 VERSN REVDAT 3 24-FEB-09 1ZZ8 1 VERSN REVDAT 2 22-NOV-05 1ZZ8 1 JRNL REVDAT 1 26-JUL-05 1ZZ8 0 JRNL AUTH L.J.HIGGINS,F.YAN,P.LIU,H.W.LIU,C.L.DRENNAN JRNL TITL STRUCTURAL INSIGHT INTO ANTIBIOTIC FOSFOMYCIN BIOSYNTHESIS JRNL TITL 2 BY A MONONUCLEAR IRON ENZYME JRNL REF NATURE V. 437 838 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 16015285 JRNL DOI 10.1038/NATURE03924 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 443915.650 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 41747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1852 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6450 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 77 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.42000 REMARK 3 B22 (A**2) : -4.42000 REMARK 3 B33 (A**2) : 8.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.980 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.870 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 30.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : S_HPP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : S_HPP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1271 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42988 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21800 REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1ZZ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.82450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.82450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.03450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.82450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.82450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.03450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.82450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.82450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.03450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.82450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.82450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.03450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -154.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 223.29800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.64900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 111.64900 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 111.64900 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 111.64900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.64900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 111.64900 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 111.64900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 LYS B 5 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASN C 3 REMARK 465 THR C 4 REMARK 465 LYS C 5 REMARK 465 ASP C 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 THR B 6 OG1 CG2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 SER B 31 OG REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLU C 13 CG CD OE1 OE2 REMARK 470 LYS C 133 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1047 O HOH A 1052 2765 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 47 32.42 -93.06 REMARK 500 GLU A 89 32.53 -99.37 REMARK 500 ASP A 101 106.45 -59.15 REMARK 500 ALA A 114 69.30 -155.21 REMARK 500 HIS A 177 -26.09 76.32 REMARK 500 LYS A 186 112.30 -31.30 REMARK 500 ASN B 99 27.39 47.18 REMARK 500 HIS B 177 -14.49 72.65 REMARK 500 LYS B 186 122.83 -37.76 REMARK 500 ASP C 98 76.19 43.64 REMARK 500 ASN C 99 -5.35 81.15 REMARK 500 ALA C 114 66.29 -151.73 REMARK 500 PRO C 129 -0.52 -38.53 REMARK 500 HIS C 177 -12.90 85.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE C 83 12.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 199 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 138 NE2 REMARK 620 2 GLU A 142 OE2 83.4 REMARK 620 3 HIS A 180 NE2 94.9 101.1 REMARK 620 4 S0H A1001 O6 164.8 83.7 95.5 REMARK 620 5 S0H A1001 O14 96.3 145.9 112.9 89.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 199 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 138 NE2 REMARK 620 2 GLU B 142 OE1 89.2 REMARK 620 3 HIS B 180 NE2 91.9 102.7 REMARK 620 4 S0H B1003 O6 171.5 86.7 96.3 REMARK 620 5 S0H B1003 O15 93.9 149.7 107.3 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 C 199 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 138 NE2 REMARK 620 2 GLU C 142 OE1 84.1 REMARK 620 3 HIS C 180 NE2 92.0 96.0 REMARK 620 4 S0H C1002 O14 95.6 153.7 110.2 REMARK 620 5 S0H C1002 O6 168.3 87.9 97.5 87.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 C 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S0H A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S0H C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S0H B 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZZ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-HPPE REMARK 900 RELATED ID: 1ZZ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FEII HPPE IN COMPLEX WITH SUBSTRATE FORM 1 REMARK 900 RELATED ID: 1ZZ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FEII HPPE HOLOENZYME REMARK 900 RELATED ID: 1ZZB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COII HPPE IN COMPLEX WITH SUBSTRATE REMARK 900 RELATED ID: 1ZZC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COII HPPE IN COMPLEX WITH TRIS BUFFER DBREF 1ZZ8 A 1 198 UNP Q56185 Q56185_STRWE 1 198 DBREF 1ZZ8 B 1 198 UNP Q56185 Q56185_STRWE 1 198 DBREF 1ZZ8 C 1 198 UNP Q56185 Q56185_STRWE 1 198 SEQRES 1 A 198 MET SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU SEQRES 2 A 198 LEU LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS SEQRES 3 A 198 ALA ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR SEQRES 4 A 198 VAL ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR SEQRES 5 A 198 LEU THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SEQRES 6 A 198 SER ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU SEQRES 7 A 198 ASP ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO SEQRES 8 A 198 ILE LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL SEQRES 9 A 198 TYR ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU SEQRES 10 A 198 VAL PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP SEQRES 11 A 198 ASP ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE SEQRES 12 A 198 LEU PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY SEQRES 13 A 198 ASP LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY SEQRES 14 A 198 ALA SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE SEQRES 15 A 198 THR ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA SEQRES 16 A 198 VAL ASN PHE SEQRES 1 B 198 MET SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU SEQRES 2 B 198 LEU LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS SEQRES 3 B 198 ALA ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR SEQRES 4 B 198 VAL ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR SEQRES 5 B 198 LEU THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SEQRES 6 B 198 SER ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU SEQRES 7 B 198 ASP ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO SEQRES 8 B 198 ILE LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL SEQRES 9 B 198 TYR ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU SEQRES 10 B 198 VAL PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP SEQRES 11 B 198 ASP ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE SEQRES 12 B 198 LEU PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY SEQRES 13 B 198 ASP LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY SEQRES 14 B 198 ALA SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE SEQRES 15 B 198 THR ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA SEQRES 16 B 198 VAL ASN PHE SEQRES 1 C 198 MET SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU SEQRES 2 C 198 LEU LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS SEQRES 3 C 198 ALA ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR SEQRES 4 C 198 VAL ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR SEQRES 5 C 198 LEU THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SEQRES 6 C 198 SER ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU SEQRES 7 C 198 ASP ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO SEQRES 8 C 198 ILE LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL SEQRES 9 C 198 TYR ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU SEQRES 10 C 198 VAL PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP SEQRES 11 C 198 ASP ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE SEQRES 12 C 198 LEU PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY SEQRES 13 C 198 ASP LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY SEQRES 14 C 198 ALA SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE SEQRES 15 C 198 THR ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA SEQRES 16 C 198 VAL ASN PHE HET FE2 A 199 1 HET S0H A1001 8 HET FE2 B 199 1 HET S0H B1003 8 HET FE2 C 199 1 HET S0H C1002 8 HETNAM FE2 FE (II) ION HETNAM S0H (S)-2-HYDROXYPROPYLPHOSPHONIC ACID FORMUL 4 FE2 3(FE 2+) FORMUL 5 S0H 3(C3 H9 O4 P) FORMUL 10 HOH *146(H2 O) HELIX 1 1 ALA A 7 VAL A 22 1 16 HELIX 2 2 ASP A 25 GLY A 34 1 10 HELIX 3 3 THR A 36 GLU A 44 1 9 HELIX 4 4 THR A 52 LEU A 63 1 12 HELIX 5 5 SER A 66 THR A 71 1 6 HELIX 6 6 ASN A 128 ALA A 132 5 5 HELIX 7 7 THR B 6 VAL B 22 1 17 HELIX 8 8 ASP B 25 GLY B 34 1 10 HELIX 9 9 THR B 36 ASN B 45 1 10 HELIX 10 10 THR B 52 LEU B 63 1 12 HELIX 11 11 SER B 66 THR B 71 1 6 HELIX 12 12 ASN B 128 ALA B 132 5 5 HELIX 13 13 THR C 6 VAL C 22 1 17 HELIX 14 14 ASP C 25 GLY C 34 1 10 HELIX 15 15 THR C 36 ASN C 45 1 10 HELIX 16 16 THR C 52 LEU C 63 1 12 HELIX 17 17 ILE C 67 THR C 71 5 5 HELIX 18 18 MET C 86 ARG C 90 5 5 SHEET 1 A 6 ILE A 92 ARG A 97 0 SHEET 2 A 6 VAL A 100 CYS A 107 -1 O TYR A 105 N LEU A 93 SHEET 3 A 6 VAL A 118 VAL A 124 -1 O VAL A 121 N ASN A 106 SHEET 4 A 6 ALA A 191 PHE A 198 -1 O LEU A 193 N VAL A 122 SHEET 5 A 6 ASN A 141 GLU A 148 -1 N PHE A 143 O VAL A 196 SHEET 6 A 6 SER A 171 VAL A 174 -1 O MET A 172 N LEU A 144 SHEET 1 B 3 ASN A 160 LEU A 166 0 SHEET 2 B 3 ILE A 151 ASP A 157 -1 N ILE A 151 O LEU A 166 SHEET 3 B 3 HIS A 180 ALA A 184 -1 O THR A 183 N HIS A 152 SHEET 1 C 6 ILE B 92 ARG B 97 0 SHEET 2 C 6 VAL B 100 CYS B 107 -1 O TYR B 105 N LEU B 93 SHEET 3 C 6 VAL B 118 VAL B 124 -1 O VAL B 121 N ASN B 106 SHEET 4 C 6 ALA B 191 PHE B 198 -1 O LEU B 193 N VAL B 122 SHEET 5 C 6 ASN B 141 GLU B 148 -1 N PHE B 143 O VAL B 196 SHEET 6 C 6 SER B 171 VAL B 174 -1 O MET B 172 N LEU B 144 SHEET 1 D 3 LYS B 162 LEU B 166 0 SHEET 2 D 3 ILE B 151 TRP B 155 -1 N ILE B 151 O LEU B 166 SHEET 3 D 3 HIS B 180 ALA B 184 -1 O THR B 183 N HIS B 152 SHEET 1 E 6 ILE C 92 ARG C 97 0 SHEET 2 E 6 VAL C 100 CYS C 107 -1 O TYR C 105 N LEU C 93 SHEET 3 E 6 VAL C 118 VAL C 124 -1 O ASP C 123 N VAL C 104 SHEET 4 E 6 ALA C 191 PHE C 198 -1 O LEU C 193 N VAL C 122 SHEET 5 E 6 ASN C 141 GLU C 148 -1 N PHE C 143 O VAL C 196 SHEET 6 E 6 SER C 171 VAL C 174 -1 O MET C 172 N LEU C 144 SHEET 1 F 3 PRO C 161 LEU C 166 0 SHEET 2 F 3 ILE C 151 GLY C 156 -1 N ILE C 151 O LEU C 166 SHEET 3 F 3 HIS C 180 ALA C 184 -1 O THR C 183 N HIS C 152 LINK NE2 HIS A 138 FE FE2 A 199 1555 1555 2.37 LINK OE2 GLU A 142 FE FE2 A 199 1555 1555 2.15 LINK NE2 HIS A 180 FE FE2 A 199 1555 1555 2.40 LINK FE FE2 A 199 O6 S0H A1001 1555 1555 2.60 LINK FE FE2 A 199 O14 S0H A1001 1555 1555 2.07 LINK NE2 HIS B 138 FE FE2 B 199 1555 1555 2.34 LINK OE1 GLU B 142 FE FE2 B 199 1555 1555 2.07 LINK NE2 HIS B 180 FE FE2 B 199 1555 1555 2.30 LINK FE FE2 B 199 O6 S0H B1003 1555 1555 2.53 LINK FE FE2 B 199 O15 S0H B1003 1555 1555 1.95 LINK NE2 HIS C 138 FE FE2 C 199 1555 1555 2.36 LINK OE1 GLU C 142 FE FE2 C 199 1555 1555 2.17 LINK NE2 HIS C 180 FE FE2 C 199 1555 1555 2.36 LINK FE FE2 C 199 O14 S0H C1002 1555 1555 1.87 LINK FE FE2 C 199 O6 S0H C1002 1555 1555 2.40 SITE 1 AC1 5 HIS A 138 GLU A 142 HIS A 180 S0H A1001 SITE 2 AC1 5 HOH A1039 SITE 1 AC2 4 HIS B 138 GLU B 142 HIS B 180 S0H B1003 SITE 1 AC3 5 HIS C 138 GLU C 142 HIS C 180 S0H C1002 SITE 2 AC3 5 HOH C1060 SITE 1 AC4 10 ARG A 97 TYR A 103 TYR A 105 ASN A 135 SITE 2 AC4 10 HIS A 138 GLU A 142 FE2 A 199 HOH A1003 SITE 3 AC4 10 LYS B 23 HOH B1031 SITE 1 AC5 11 LYS C 23 ARG C 97 TYR C 103 TYR C 105 SITE 2 AC5 11 ASN C 135 HIS C 138 GLU C 142 HIS C 180 SITE 3 AC5 11 FE2 C 199 HOH C1058 HOH C1059 SITE 1 AC6 9 LYS A 23 ARG B 97 TYR B 105 ASN B 135 SITE 2 AC6 9 HIS B 138 GLU B 142 HIS B 180 FE2 B 199 SITE 3 AC6 9 HOH B1006 CRYST1 111.649 111.649 152.069 90.00 90.00 90.00 P 42 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006576 0.00000