HEADER HYDROLASE/HYDROLASE INHIBITOR 30-NOV-97 1A0H TITLE THE X-RAY CRYSTAL STRUCTURE OF PPACK-MEIZOTHROMBIN DESF1: TITLE 2 KRINGLE/THROMBIN AND CARBOHYDRATE/KRINGLE/THROMBIN INTERACTIONS AND TITLE 3 LOCATION OF THE LINKER CHAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEIZOTHROMBIN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: F2/THROMBIN DOMAIN; COMPND 5 SYNONYM: DESF1; COMPND 6 EC: 3.4.21.5; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MEIZOTHROMBIN; COMPND 9 CHAIN: B, E; COMPND 10 FRAGMENT: F2/THROMBIN DOMAIN; COMPND 11 SYNONYM: DESF1; COMPND 12 EC: 3.4.21.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: BLOOD; SOURCE 6 TISSUE: BLOOD PLASMA; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 9 ORGANISM_COMMON: CATTLE; SOURCE 10 ORGANISM_TAXID: 9913; SOURCE 11 ORGAN: BLOOD; SOURCE 12 TISSUE: BLOOD PLASMA KEYWDS SERINE PROTEASE, COAGULATION, THROMBIN, PROTHROMBIN, MEIZOTHROMBIN, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.D.MARTIN,M.G.MALKOWSKI,J.BOX,C.T.ESMON,B.F.P.EDWARDS REVDAT 6 03-APR-24 1A0H 1 HETSYN REVDAT 5 29-JUL-20 1A0H 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 16-NOV-11 1A0H 1 HETATM REVDAT 3 13-JUL-11 1A0H 1 VERSN REVDAT 2 24-FEB-09 1A0H 1 VERSN REVDAT 1 17-JUN-98 1A0H 0 JRNL AUTH P.D.MARTIN,M.G.MALKOWSKI,J.BOX,C.T.ESMON,B.F.EDWARDS JRNL TITL NEW INSIGHTS INTO THE REGULATION OF THE BLOOD CLOTTING JRNL TITL 2 CASCADE DERIVED FROM THE X-RAY CRYSTAL STRUCTURE OF BOVINE JRNL TITL 3 MEIZOTHROMBIN DES F1 IN COMPLEX WITH PPACK. JRNL REF STRUCTURE V. 5 1681 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9438869 JRNL DOI 10.1016/S0969-2126(97)00314-6 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.84 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 99999999.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0001 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 30519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAR-96 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : 0.3 MM COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALEK, XENGEN REMARK 200 DATA SCALING SOFTWARE : SCALEK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31648 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : 0.19000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.84 REMARK 200 STARTING MODEL: THROMBIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17 MG/ML PROTEIN, 2% PEG4000, .25 M REMARK 280 AMMONIUM PHOSPHATE, PH 8.0, 33% SATURATED AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.14500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 93.07500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 93.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.07250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 93.07500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 93.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.21750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 93.07500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.07500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.07250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 93.07500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.07500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.21750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.14500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 24 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 78 O HOH E 40 3545 0.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 317 CA ILE A 317 CB 0.362 REMARK 500 ILE A 317 CA ILE A 317 C 0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 182 CB - CG - CD1 ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU A 182 CB - CG - CD2 ANGL. DEV. = -16.1 DEGREES REMARK 500 CYS A 231 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 PRO A 297 C - N - CA ANGL. DEV. = 11.6 DEGREES REMARK 500 LEU D 182 CB - CG - CD1 ANGL. DEV. = -11.9 DEGREES REMARK 500 PRO D 264 C - N - CA ANGL. DEV. = 12.1 DEGREES REMARK 500 CYS E 507 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 TYR E 535 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 166 37.37 -84.14 REMARK 500 ASP A 173 47.87 27.47 REMARK 500 GLU A 177 20.62 -72.35 REMARK 500 ARG A 190 -130.38 -57.46 REMARK 500 CYS A 191 146.99 179.39 REMARK 500 ALA A 193 109.65 -59.90 REMARK 500 LYS A 204 59.91 -66.48 REMARK 500 ASP A 205 -31.48 174.62 REMARK 500 GLN A 206 -162.79 -74.50 REMARK 500 PRO A 210 -102.43 -60.04 REMARK 500 ALA A 211 -69.17 72.31 REMARK 500 LEU A 214 65.69 -101.93 REMARK 500 GLU A 216 -95.54 46.78 REMARK 500 ASN A 217 24.11 -140.78 REMARK 500 CYS A 219 130.54 -38.94 REMARK 500 ALA A 234 -150.08 -145.46 REMARK 500 ASN A 246 62.16 74.48 REMARK 500 CYS A 248 -79.59 -68.13 REMARK 500 ASP A 255 88.77 -46.64 REMARK 500 LEU A 256 -105.85 56.31 REMARK 500 LEU A 260 -78.95 -43.13 REMARK 500 GLU A 262 95.39 -54.94 REMARK 500 PRO A 264 148.91 -19.26 REMARK 500 ILE A 268 110.64 83.13 REMARK 500 GLU A 269 -83.67 -73.26 REMARK 500 ASP A 275 -79.08 -74.75 REMARK 500 HIS A 276 16.87 -154.08 REMARK 500 PHE A 277 -68.92 -135.51 REMARK 500 GLN A 278 108.74 83.42 REMARK 500 PHE A 280 14.37 -141.76 REMARK 500 ASN A 282 -23.26 76.11 REMARK 500 GLU A 283 -48.34 72.50 REMARK 500 ALA A 291 -38.08 -31.85 REMARK 500 PHE A 299 -90.34 -133.67 REMARK 500 GLN A 303 39.10 35.17 REMARK 500 GLN A 307 -54.90 -16.34 REMARK 500 TYR A 316 -72.85 -42.30 REMARK 500 GLU A 318 155.01 90.98 REMARK 500 LEU B 331 -89.70 -48.51 REMARK 500 CYS B 348 -157.99 -153.55 REMARK 500 TYR B 367 80.45 -151.09 REMARK 500 ASN B 373 75.83 -168.98 REMARK 500 HIS B 386 -73.30 -142.33 REMARK 500 ARG B 388 11.11 -65.83 REMARK 500 ARG B 390 107.29 114.05 REMARK 500 ARG B 393 -38.99 -20.71 REMARK 500 LYS B 394 -66.65 -92.00 REMARK 500 LYS B 397 73.53 -159.01 REMARK 500 ASP B 402 -56.56 -138.03 REMARK 500 LYS B 403 -65.31 -90.84 REMARK 500 REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR E 540 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE UNBOUND FORM OF THE INHIBITOR IS D-PHE-PRO-ARG- REMARK 600 CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO REMARK 600 COVALENT BONDS: 1) A COVALENT BOND TO SER525 (CHAINS B,E) FORMING A REMARK 600 HEMIKETAL AR7 AND 2) A COVALENT BOND TO NE2 OF HIS363 (CHAINS B,E) REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0G6 B 1 REMARK 630 0G6 E 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PRO AR7 0QE REMARK 630 DETAILS: NULL DBREF 1A0H A 164 320 UNP P00735 THRB_BOVIN 208 366 DBREF 1A0H B 321 579 UNP P00735 THRB_BOVIN 367 625 DBREF 1A0H D 164 320 UNP P00735 THRB_BOVIN 208 366 DBREF 1A0H E 321 579 UNP P00735 THRB_BOVIN 367 625 SEQADV 1A0H HIS A 187 UNP P00735 SER 231 CONFLICT SEQADV 1A0H HIS D 187 UNP P00735 SER 231 CONFLICT SEQRES 1 A 159 SER PRO LEU LEU GLU THR CYS VAL PRO ASP ARG GLY ARG SEQRES 2 A 159 GLU TYR ARG GLY ARG LEU ALA VAL THR THR HIS GLY SER SEQRES 3 A 159 ARG CYS LEU ALA TRP SER SER GLU GLN ALA LYS ALA LEU SEQRES 4 A 159 SER LYS ASP GLN ASP PHE ASN PRO ALA VAL PRO LEU ALA SEQRES 5 A 159 GLU ASN PHE CYS ARG ASN PRO ASP GLY ASP GLU GLU GLY SEQRES 6 A 159 ALA TRP CYS TYR VAL ALA ASP GLN PRO GLY ASP PHE GLU SEQRES 7 A 159 TYR CYS ASP LEU ASN TYR CYS GLU GLU PRO VAL ASP GLY SEQRES 8 A 159 ASP LEU GLY ASP ARG LEU GLY GLU ASP PRO ASP PRO ASP SEQRES 9 A 159 ALA ALA ILE GLU GLY ARG THR SER GLU ASP HIS PHE GLN SEQRES 10 A 159 PRO PHE PHE ASN GLU LYS THR PHE GLY ALA GLY GLU ALA SEQRES 11 A 159 ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS GLN VAL SEQRES 12 A 159 GLN ASP GLN THR GLU LYS GLU LEU PHE GLU SER TYR ILE SEQRES 13 A 159 GLU GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY GLN ASP ALA GLU VAL GLY LEU SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR VAL ASP ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG LYS VAL GLU LYS ILE SEQRES 7 B 259 SER MET LEU ASP LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP LYS GLU ASN LEU ASP ARG ASP ILE ALA LEU LEU LYS SEQRES 9 B 259 LEU LYS ARG PRO ILE GLU LEU SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP LYS GLN THR ALA ALA LYS LEU LEU SEQRES 11 B 259 HIS ALA GLY PHE LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 ARG ARG GLU THR TRP THR THR SER VAL ALA GLU VAL GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO LEU VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ALA SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO GLY GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO TYR ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP ARG LEU GLY SER SEQRES 1 D 159 SER PRO LEU LEU GLU THR CYS VAL PRO ASP ARG GLY ARG SEQRES 2 D 159 GLU TYR ARG GLY ARG LEU ALA VAL THR THR HIS GLY SER SEQRES 3 D 159 ARG CYS LEU ALA TRP SER SER GLU GLN ALA LYS ALA LEU SEQRES 4 D 159 SER LYS ASP GLN ASP PHE ASN PRO ALA VAL PRO LEU ALA SEQRES 5 D 159 GLU ASN PHE CYS ARG ASN PRO ASP GLY ASP GLU GLU GLY SEQRES 6 D 159 ALA TRP CYS TYR VAL ALA ASP GLN PRO GLY ASP PHE GLU SEQRES 7 D 159 TYR CYS ASP LEU ASN TYR CYS GLU GLU PRO VAL ASP GLY SEQRES 8 D 159 ASP LEU GLY ASP ARG LEU GLY GLU ASP PRO ASP PRO ASP SEQRES 9 D 159 ALA ALA ILE GLU GLY ARG THR SER GLU ASP HIS PHE GLN SEQRES 10 D 159 PRO PHE PHE ASN GLU LYS THR PHE GLY ALA GLY GLU ALA SEQRES 11 D 159 ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS GLN VAL SEQRES 12 D 159 GLN ASP GLN THR GLU LYS GLU LEU PHE GLU SER TYR ILE SEQRES 13 D 159 GLU GLY ARG SEQRES 1 E 259 ILE VAL GLU GLY GLN ASP ALA GLU VAL GLY LEU SER PRO SEQRES 2 E 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 E 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 E 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 E 259 ASN PHE THR VAL ASP ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 E 259 HIS SER ARG THR ARG TYR GLU ARG LYS VAL GLU LYS ILE SEQRES 7 E 259 SER MET LEU ASP LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 E 259 TRP LYS GLU ASN LEU ASP ARG ASP ILE ALA LEU LEU LYS SEQRES 9 E 259 LEU LYS ARG PRO ILE GLU LEU SER ASP TYR ILE HIS PRO SEQRES 10 E 259 VAL CYS LEU PRO ASP LYS GLN THR ALA ALA LYS LEU LEU SEQRES 11 E 259 HIS ALA GLY PHE LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 E 259 ARG ARG GLU THR TRP THR THR SER VAL ALA GLU VAL GLN SEQRES 13 E 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO LEU VAL GLU SEQRES 14 E 259 ARG PRO VAL CYS LYS ALA SER THR ARG ILE ARG ILE THR SEQRES 15 E 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO GLY GLU GLY SEQRES 16 E 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 E 259 PHE VAL MET LYS SER PRO TYR ASN ASN ARG TRP TYR GLN SEQRES 18 E 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 E 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 E 259 LYS TRP ILE GLN LYS VAL ILE ASP ARG LEU GLY SER MODRES 1A0H ASN B 373 ASN GLYCOSYLATION SITE MODRES 1A0H ASN E 373 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG F 1 14 HET NAG F 2 14 HET 0G6 B 1 30 HET 0G6 E 1 30 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- HETNAM 3 0G6 PROLINAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 0G6 PPACK FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 7 0G6 2(C21 H34 CL N6 O3 1+) FORMUL 9 HOH *87(H2 O) HELIX 1 1 ASP A 173 GLY A 175 5 3 HELIX 2 2 ALA A 199 LEU A 202 1 4 HELIX 3 3 GLU A 290 ASP A 292 5 3 HELIX 4 4 GLU A 309 TYR A 316 1 8 HELIX 5 5 ALA B 362 CYS B 364 5 3 HELIX 6 6 PRO B 368 TRP B 370 5 3 HELIX 7 7 VAL B 376 ASP B 378 5 3 HELIX 8 8 LYS B 443 LEU B 449 1 7 HELIX 9 9 VAL B 472 VAL B 475 5 4 HELIX 10 10 ARG B 490 SER B 496 1 7 HELIX 11 11 TYR B 535 ASN B 537 5 3 HELIX 12 12 VAL B 563 ARG B 576 1 14 HELIX 13 13 ASP D 173 GLY D 175 5 3 HELIX 14 14 GLU D 197 SER D 203 1 7 HELIX 15 15 LEU D 256 ARG D 259 5 4 HELIX 16 16 GLU D 290 ASP D 292 5 3 HELIX 17 17 GLU D 300 LYS D 302 5 3 HELIX 18 18 GLU D 309 ILE D 317 1 9 HELIX 19 19 ALA E 362 CYS E 364 5 3 HELIX 20 20 PRO E 368 TRP E 370 5 3 HELIX 21 21 VAL E 376 ASP E 378 5 3 HELIX 22 22 LYS E 443 LEU E 449 1 7 HELIX 23 23 VAL E 472 VAL E 475 5 4 HELIX 24 24 ARG E 490 SER E 496 1 7 HELIX 25 25 VAL E 563 ARG E 576 5 14 SHEET 1 A 2 TRP A 230 TYR A 232 0 SHEET 2 A 2 PHE A 240 TYR A 242 -1 N GLU A 241 O CYS A 231 SHEET 1 B 4 LYS B 397 MET B 400 0 SHEET 2 B 4 LEU B 379 ILE B 383 -1 N ILE B 383 O LYS B 397 SHEET 3 B 4 GLN B 335 ARG B 340 -1 N PHE B 339 O LEU B 380 SHEET 4 B 4 GLU B 345 SER B 351 -1 N ALA B 350 O VAL B 336 SHEET 1 C 2 LYS B 455 THR B 459 0 SHEET 2 C 2 VAL B 482 PRO B 486 -1 N LEU B 485 O GLY B 456 SHEET 1 D 4 MET B 505 ALA B 508 0 SHEET 2 D 4 GLY B 558 HIS B 562 -1 N TYR B 560 O PHE B 506 SHEET 3 D 4 TRP B 539 TRP B 547 -1 N TRP B 547 O PHE B 559 SHEET 4 D 4 PRO B 528 LYS B 532 -1 N MET B 531 O TYR B 540 SHEET 1 E 2 TRP D 230 TYR D 232 0 SHEET 2 E 2 PHE D 240 TYR D 242 -1 N GLU D 241 O CYS D 231 SHEET 1 F 4 LYS E 397 SER E 399 0 SHEET 2 F 4 LEU E 379 ILE E 383 -1 N ILE E 383 O LYS E 397 SHEET 3 F 4 VAL E 336 ARG E 340 -1 N PHE E 339 O LEU E 380 SHEET 4 F 4 GLU E 345 CYS E 348 -1 N CYS E 348 O LEU E 338 SHEET 1 G 2 TRP E 357 THR E 360 0 SHEET 2 G 2 ALA E 421 LYS E 424 -1 N LEU E 423 O VAL E 358 SHEET 1 H 2 LYS E 455 THR E 459 0 SHEET 2 H 2 VAL E 482 PRO E 486 -1 N LEU E 485 O GLY E 456 SHEET 1 I 4 MET E 505 ALA E 508 0 SHEET 2 I 4 GLY E 558 THR E 561 -1 N TYR E 560 O PHE E 506 SHEET 3 I 4 TRP E 539 TRP E 547 -1 N TRP E 547 O PHE E 559 SHEET 4 I 4 PRO E 528 LYS E 532 -1 N MET E 531 O TYR E 540 SSBOND 1 CYS A 170 CYS A 248 1555 1555 2.03 SSBOND 2 CYS A 191 CYS A 231 1555 1555 2.03 SSBOND 3 CYS A 219 CYS A 243 1555 1555 2.04 SSBOND 4 CYS A 293 CYS B 439 1555 1555 2.01 SSBOND 5 CYS B 348 CYS B 364 1555 1555 2.01 SSBOND 6 CYS B 493 CYS B 507 1555 1555 2.05 SSBOND 7 CYS B 521 CYS B 551 1555 1555 2.02 SSBOND 8 CYS D 170 CYS D 248 1555 1555 2.02 SSBOND 9 CYS D 191 CYS D 231 1555 1555 2.01 SSBOND 10 CYS D 219 CYS D 243 1555 1555 2.04 SSBOND 11 CYS D 293 CYS E 439 1555 1555 2.04 SSBOND 12 CYS E 348 CYS E 364 1555 1555 2.02 SSBOND 13 CYS E 493 CYS E 507 1555 1555 2.02 SSBOND 14 CYS E 521 CYS E 551 1555 1555 2.03 LINK C3 0G6 B 1 NE2 HIS B 363 1555 1555 1.46 LINK C2 0G6 B 1 OG SER B 525 1555 1555 1.40 LINK ND2 ASN B 373 C1 NAG C 1 1555 1555 1.45 LINK C3 0G6 E 1 NE2 HIS E 363 1555 1555 1.46 LINK C2 0G6 E 1 OG SER E 525 1555 1555 1.38 LINK ND2 ASN E 373 C1 NAG F 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.38 CISPEP 1 SER B 342 PRO B 343 0 1.38 CISPEP 2 SER E 342 PRO E 343 0 0.78 CRYST1 186.150 186.150 120.290 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008313 0.00000 MTRIX1 1 -0.900240 -0.435360 -0.005550 178.65675 1 MTRIX2 1 -0.433810 0.897970 -0.073910 42.02666 1 MTRIX3 1 0.037160 -0.064130 -0.997250 32.13877 1