HEADER LIGASE 01-DEC-97 1A0I TITLE ATP-DEPENDENT DNA LIGASE FROM BACTERIOPHAGE T7 COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.5.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 3 ORGANISM_TAXID: 10760; SOURCE 4 GENE: LIG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: T7; SOURCE 11 EXPRESSION_SYSTEM_GENE: T7 KEYWDS LIGASE, DNA REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR H.S.SUBRAMANYA,A.J.DOHERTY,S.R.ASHFORD,D.B.WIGLEY REVDAT 3 07-FEB-24 1A0I 1 REMARK REVDAT 2 24-FEB-09 1A0I 1 VERSN REVDAT 1 25-MAR-98 1A0I 0 JRNL AUTH H.S.SUBRAMANYA,A.J.DOHERTY,S.R.ASHFORD,D.B.WIGLEY JRNL TITL CRYSTAL STRUCTURE OF AN ATP-DEPENDENT DNA LIGASE FROM JRNL TITL 2 BACTERIOPHAGE T7. JRNL REF CELL(CAMBRIDGE,MASS.) V. 85 607 1996 JRNL REFN ISSN 0092-8674 JRNL PMID 8653795 JRNL DOI 10.1016/S0092-8674(00)81260-X REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.341 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1456 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE : 0.4800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 3.390 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : AUG-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX7.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13758 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.11400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR 3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 122 REMARK 465 GLU A 123 REMARK 465 LEU A 124 REMARK 465 PHE A 125 REMARK 465 VAL A 126 REMARK 465 GLU A 127 REMARK 465 PRO A 128 REMARK 465 ILE A 129 REMARK 465 SER A 307 REMARK 465 PRO A 308 REMARK 465 TYR A 309 REMARK 465 GLY A 310 REMARK 465 ILE A 311 REMARK 465 GLY A 312 REMARK 465 ASP A 313 REMARK 465 ASN A 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 140 NE2 HIS A 140 CD2 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 4 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 GLU A 32 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 TRP A 52 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP A 52 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 55 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 VAL A 56 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 TRP A 73 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 73 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 MET A 95 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 TRP A 112 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 112 CB - CG - CD1 ANGL. DEV. = -9.0 DEGREES REMARK 500 TRP A 112 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP A 112 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 THR A 115 N - CA - C ANGL. DEV. = 20.3 DEGREES REMARK 500 THR A 115 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 GLU A 119 N - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 GLU A 119 CA - C - N ANGL. DEV. = -17.0 DEGREES REMARK 500 PHE A 120 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 PHE A 120 N - CA - C ANGL. DEV. = 29.1 DEGREES REMARK 500 LYS A 131 CA - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 ASP A 133 N - CA - C ANGL. DEV. = 34.3 DEGREES REMARK 500 ASP A 133 CA - C - N ANGL. DEV. = -17.8 DEGREES REMARK 500 TRP A 190 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 190 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 236 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 236 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 237 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 237 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP A 246 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 SER A 284 N - CA - C ANGL. DEV. = 18.7 DEGREES REMARK 500 ARG A 285 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TRP A 303 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP A 303 CG - CD2 - CE3 ANGL. DEV. = 6.0 DEGREES REMARK 500 ALA A 316 N - CA - CB ANGL. DEV. = -8.7 DEGREES REMARK 500 TRP A 325 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 325 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 349 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 349 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 4 84.56 40.27 REMARK 500 ASN A 7 63.14 38.88 REMARK 500 TYR A 28 -176.50 -179.71 REMARK 500 SER A 54 -168.37 -114.18 REMARK 500 ASP A 79 128.29 -35.63 REMARK 500 TYR A 84 79.77 -112.36 REMARK 500 ASN A 102 -7.31 82.24 REMARK 500 TRP A 112 143.87 129.02 REMARK 500 ASP A 114 110.46 165.10 REMARK 500 GLU A 119 105.32 72.47 REMARK 500 LYS A 134 92.75 140.88 REMARK 500 GLN A 250 51.65 -164.69 REMARK 500 TRP A 254 -67.23 -91.51 REMARK 500 LEU A 259 40.48 92.81 REMARK 500 ALA A 260 137.88 -176.55 REMARK 500 ASN A 261 -50.27 1.79 REMARK 500 VAL A 265 110.96 -23.02 REMARK 500 THR A 281 -91.01 -117.26 REMARK 500 ASN A 282 66.46 -1.48 REMARK 500 ARG A 285 -49.65 100.38 REMARK 500 SER A 301 49.33 -100.40 REMARK 500 GLN A 302 -27.01 -145.80 REMARK 500 TRP A 303 105.02 46.25 REMARK 500 PHE A 305 89.26 54.24 REMARK 500 PRO A 321 47.54 -75.06 REMARK 500 TYR A 322 -9.22 -158.19 REMARK 500 VAL A 346 -70.07 -113.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 119 PHE A 120 -79.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 119 -15.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1 DBREF 1A0I A 3 349 UNP P00969 DNLI_BPT7 3 349 SEQRES 1 A 348 VAL ASN ILE LYS THR ASN PRO PHE LYS ALA VAL SER PHE SEQRES 2 A 348 VAL GLU SER ALA ILE LYS LYS ALA LEU ASP ASN ALA GLY SEQRES 3 A 348 TYR LEU ILE ALA GLU ILE LYS TYR ASP GLY VAL ARG GLY SEQRES 4 A 348 ASN ILE CYS VAL ASP ASN THR ALA ASN SER TYR TRP LEU SEQRES 5 A 348 SER ARG VAL SER LYS THR ILE PRO ALA LEU GLU HIS LEU SEQRES 6 A 348 ASN GLY PHE ASP VAL ARG TRP LYS ARG LEU LEU ASN ASP SEQRES 7 A 348 ASP ARG CYS PHE TYR LYS ASP GLY PHE MET LEU ASP GLY SEQRES 8 A 348 GLU LEU MET VAL LYS GLY VAL ASP PHE ASN THR GLY SER SEQRES 9 A 348 GLY LEU LEU ARG THR LYS TRP THR ASP THR LYS ASN GLN SEQRES 10 A 348 GLU PHE HIS GLU GLU LEU PHE VAL GLU PRO ILE ARG LYS SEQRES 11 A 348 LYS ASP LYS VAL PRO PHE LYS LEU HIS THR GLY HIS LEU SEQRES 12 A 348 HIS ILE LYS LEU TYR ALA ILE LEU PRO LEU HIS ILE VAL SEQRES 13 A 348 GLU SER GLY GLU ASP CYS ASP VAL MET THR LEU LEU MET SEQRES 14 A 348 GLN GLU HIS VAL LYS ASN MET LEU PRO LEU LEU GLN GLU SEQRES 15 A 348 TYR PHE PRO GLU ILE GLU TRP GLN ALA ALA GLU SER TYR SEQRES 16 A 348 GLU VAL TYR ASP MET VAL GLU LEU GLN GLN LEU TYR GLU SEQRES 17 A 348 GLN LYS ARG ALA GLU GLY HIS GLU GLY LEU ILE VAL LYS SEQRES 18 A 348 ASP PRO MET CYS ILE TYR LYS ARG GLY LYS LYS SER GLY SEQRES 19 A 348 TRP TRP LYS MET LYS PRO GLU ASN GLU ALA ASP GLY ILE SEQRES 20 A 348 ILE GLN GLY LEU VAL TRP GLY THR LYS GLY LEU ALA ASN SEQRES 21 A 348 GLU GLY LYS VAL ILE GLY PHE GLU VAL LEU LEU GLU SER SEQRES 22 A 348 GLY ARG LEU VAL ASN ALA THR ASN ILE SER ARG ALA LEU SEQRES 23 A 348 MET ASP GLU PHE THR GLU THR VAL LYS GLU ALA THR LEU SEQRES 24 A 348 SER GLN TRP GLY PHE PHE SER PRO TYR GLY ILE GLY ASP SEQRES 25 A 348 ASN ASP ALA CYS THR ILE ASN PRO TYR ASP GLY TRP ALA SEQRES 26 A 348 CYS GLN ILE SER TYR MET GLU GLU THR PRO ASP GLY SER SEQRES 27 A 348 LEU ARG HIS PRO SER PHE VAL MET PHE ARG HET ATP A 1 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 HOH *193(H2 O) HELIX 1 1 GLU A 16 ALA A 26 1 11 HELIX 2 2 PRO A 61 LEU A 66 5 6 HELIX 3 3 VAL A 71 ASN A 78 1 8 HELIX 4 4 GLY A 104 ARG A 109 1 6 HELIX 5 5 LEU A 154 SER A 159 1 6 HELIX 6 6 THR A 167 TYR A 184 1 18 HELIX 7 7 MET A 201 GLU A 214 1 14 HELIX 8 8 ALA A 286 THR A 299 1 14 SHEET 1 A 5 SER A 195 VAL A 198 0 SHEET 2 A 5 LEU A 29 ILE A 33 -1 N ALA A 31 O TYR A 196 SHEET 3 A 5 LEU A 219 LYS A 222 -1 N LYS A 222 O ILE A 30 SHEET 4 A 5 GLY A 231 MET A 239 -1 N MET A 239 O LEU A 219 SHEET 5 A 5 PHE A 9 SER A 13 1 N LYS A 10 O GLY A 231 SHEET 1 B 5 SER A 50 LEU A 53 0 SHEET 2 B 5 VAL A 38 ASP A 45 -1 N CYS A 43 O TYR A 51 SHEET 3 B 5 GLY A 87 VAL A 96 -1 N LEU A 94 O VAL A 38 SHEET 4 B 5 LEU A 144 PRO A 153 -1 N LEU A 152 O MET A 89 SHEET 5 B 5 GLU A 189 ALA A 192 1 N GLU A 189 O ILE A 146 SHEET 1 C 3 ASN A 243 ILE A 248 0 SHEET 2 C 3 ALA A 326 TYR A 331 -1 N TYR A 331 O ASN A 243 SHEET 3 C 3 SER A 344 PHE A 348 -1 N MET A 347 O GLN A 328 SHEET 1 D 2 PHE A 268 LEU A 271 0 SHEET 2 D 2 LEU A 277 ALA A 280 -1 N ALA A 280 O PHE A 268 SITE 1 AC1 16 GLU A 32 ILE A 33 LYS A 34 TYR A 35 SITE 2 AC1 16 ARG A 39 ARG A 55 GLU A 93 TYR A 149 SITE 3 AC1 16 ILE A 220 LYS A 222 LYS A 232 TRP A 236 SITE 4 AC1 16 LYS A 238 HOH A 351 HOH A 434 HOH A 459 CRYST1 64.700 85.200 79.100 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012642 0.00000