HEADER TRANSFERASE 26-JAN-98 1A3W TITLE PYRUVATE KINASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH FBP, PG, TITLE 2 MN2+ AND K+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.40 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS PYRUVATE KINASE, ALLOSTERIC REGULATION, TRANFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.JURICA,A.MESECAR,P.J.HEATH,W.SHI,T.NOWAK,B.L.STODDARD REVDAT 6 22-MAY-24 1A3W 1 REMARK REVDAT 5 02-AUG-23 1A3W 1 HETSYN REVDAT 4 29-JUL-20 1A3W 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 13-JUL-11 1A3W 1 VERSN REVDAT 2 24-FEB-09 1A3W 1 VERSN REVDAT 1 27-MAY-98 1A3W 0 JRNL AUTH M.S.JURICA,A.MESECAR,P.J.HEATH,W.SHI,T.NOWAK,B.L.STODDARD JRNL TITL THE ALLOSTERIC REGULATION OF PYRUVATE KINASE BY JRNL TITL 2 FRUCTOSE-1,6-BISPHOSPHATE. JRNL REF STRUCTURE V. 6 195 1998 JRNL REFN ISSN 0969-2126 JRNL PMID 9519410 JRNL DOI 10.1016/S0969-2126(98)00021-5 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 75.9 REMARK 3 NUMBER OF REFLECTIONS : 17327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1684 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1197 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE : 0.4214 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.0129; 300 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 2 POSITIONAL (A) : 0.0590; 200 REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 3 POSITIONAL (A) : 0.0171; 200 REMARK 3 GROUP 3 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 4 POSITIONAL (A) : 0.0169; 100 REMARK 3 GROUP 4 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : 2PL.PAR REMARK 3 PARAMETER FILE 3 : FBP.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : 2PL.TOP REMARK 3 TOPOLOGY FILE 3 : FBP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-94 REMARK 200 TEMPERATURE (KELVIN) : 286 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19294 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: PDB ENTRY 1PKN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.70000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 19580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.31831 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 102.60576 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 11 REMARK 465 VAL A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 ASP A 160 REMARK 465 LYS A 161 REMARK 465 MET B 1 REMARK 465 ASN B 11 REMARK 465 VAL B 12 REMARK 465 VAL B 13 REMARK 465 ALA B 14 REMARK 465 GLY B 15 REMARK 465 VAL B 99 REMARK 465 ASP B 100 REMARK 465 TYR B 101 REMARK 465 ASP B 160 REMARK 465 LYS B 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 369 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 369 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 409 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 409 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 428 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 428 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 369 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 369 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 409 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 409 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG B 428 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 428 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 34 -56.46 -28.43 REMARK 500 ASN A 46 -84.03 -122.67 REMARK 500 TYR A 74 104.41 -165.89 REMARK 500 PRO A 78 85.97 -29.77 REMARK 500 ASP A 98 164.33 61.00 REMARK 500 VAL A 99 86.87 -37.73 REMARK 500 ASN A 106 12.73 167.33 REMARK 500 THR A 113 29.00 -150.51 REMARK 500 ASP A 115 -21.74 59.96 REMARK 500 ALA A 120 2.66 -153.78 REMARK 500 ASP A 123 -87.41 48.24 REMARK 500 LYS A 124 18.25 -65.58 REMARK 500 ILE A 125 159.93 177.75 REMARK 500 TYR A 130 96.72 -50.68 REMARK 500 ASP A 146 101.22 61.85 REMARK 500 ASP A 147 19.53 51.26 REMARK 500 VAL A 154 102.22 -47.84 REMARK 500 GLU A 156 138.48 -170.66 REMARK 500 ALA A 170 -140.31 -67.62 REMARK 500 HIS A 176 70.12 49.55 REMARK 500 LEU A 181 75.40 -115.78 REMARK 500 ASP A 187 30.13 -84.57 REMARK 500 ARG A 216 -50.38 -137.41 REMARK 500 LYS A 233 -89.25 37.75 REMARK 500 ASN A 243 -152.79 -110.62 REMARK 500 THR A 257 171.48 -51.42 REMARK 500 VAL A 262 96.10 -65.65 REMARK 500 GLN A 280 -71.95 -64.31 REMARK 500 LYS A 281 -35.65 -37.77 REMARK 500 THR A 298 119.24 81.97 REMARK 500 LEU A 301 41.91 -167.29 REMARK 500 SER A 332 -116.62 -88.57 REMARK 500 LYS A 337 -18.81 170.79 REMARK 500 PRO A 373 -114.13 -84.10 REMARK 500 LYS A 374 4.59 150.92 REMARK 500 ALA A 397 149.89 179.01 REMARK 500 TYR A 414 24.30 -65.19 REMARK 500 ARG A 415 109.70 1.71 REMARK 500 ASN A 417 23.37 -78.03 REMARK 500 LYS A 446 107.94 -43.10 REMARK 500 VAL A 449 -119.40 -79.39 REMARK 500 LYS A 475 -100.87 -54.25 REMARK 500 ASP A 477 -158.46 -104.27 REMARK 500 PHE A 485 46.49 168.70 REMARK 500 ALA A 487 98.02 -26.01 REMARK 500 ALA A 489 41.21 -71.86 REMARK 500 HIS A 491 68.05 -164.33 REMARK 500 SER A 492 124.93 58.81 REMARK 500 ASN A 493 -2.79 -172.76 REMARK 500 PRO B 34 -56.57 -28.48 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1002 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 51 OD1 REMARK 620 2 SER A 53 OG 62.9 REMARK 620 3 ASP A 84 OD1 112.6 169.0 REMARK 620 4 THR A 85 O 129.6 109.2 65.1 REMARK 620 5 PGA A1005 O4P 100.8 112.0 78.4 125.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 242 OE2 REMARK 620 2 ASP A 266 OD2 131.9 REMARK 620 3 PGA A1005 O1P 122.9 98.4 REMARK 620 4 PGA A1005 O1 99.8 105.4 88.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1004 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 51 OD1 REMARK 620 2 SER B 53 OG 62.7 REMARK 620 3 ASP B 84 O 81.1 108.7 REMARK 620 4 ASP B 84 OD1 113.1 172.2 63.7 REMARK 620 5 THR B 85 O 132.1 110.2 55.2 67.2 REMARK 620 6 PGA B1006 O4P 95.9 109.9 134.6 76.6 127.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1003 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 242 OE2 REMARK 620 2 ASP B 266 OD2 133.4 REMARK 620 3 PGA B1006 O1P 120.7 99.0 REMARK 620 4 PGA B1006 O1 103.1 99.5 90.6 REMARK 620 N 1 2 3 DBREF 1A3W A 1 500 UNP P00549 KPYK1_YEAST 1 500 DBREF 1A3W B 1 500 UNP P00549 KPYK1_YEAST 1 500 SEQRES 1 A 500 MET SER ARG LEU GLU ARG LEU THR SER LEU ASN VAL VAL SEQRES 2 A 500 ALA GLY SER ASP LEU ARG ARG THR SER ILE ILE GLY THR SEQRES 3 A 500 ILE GLY PRO LYS THR ASN ASN PRO GLU THR LEU VAL ALA SEQRES 4 A 500 LEU ARG LYS ALA GLY LEU ASN ILE VAL ARG MET ASN PHE SEQRES 5 A 500 SER HIS GLY SER TYR GLU TYR HIS LYS SER VAL ILE ASP SEQRES 6 A 500 ASN ALA ARG LYS SER GLU GLU LEU TYR PRO GLY ARG PRO SEQRES 7 A 500 LEU ALA ILE ALA LEU ASP THR LYS GLY PRO GLU ILE ARG SEQRES 8 A 500 THR GLY THR THR THR ASN ASP VAL ASP TYR PRO ILE PRO SEQRES 9 A 500 PRO ASN HIS GLU MET ILE PHE THR THR ASP ASP LYS TYR SEQRES 10 A 500 ALA LYS ALA CYS ASP ASP LYS ILE MET TYR VAL ASP TYR SEQRES 11 A 500 LYS ASN ILE THR LYS VAL ILE SER ALA GLY ARG ILE ILE SEQRES 12 A 500 TYR VAL ASP ASP GLY VAL LEU SER PHE GLN VAL LEU GLU SEQRES 13 A 500 VAL VAL ASP ASP LYS THR LEU LYS VAL LYS ALA LEU ASN SEQRES 14 A 500 ALA GLY LYS ILE CYS SER HIS LYS GLY VAL ASN LEU PRO SEQRES 15 A 500 GLY THR ASP VAL ASP LEU PRO ALA LEU SER GLU LYS ASP SEQRES 16 A 500 LYS GLU ASP LEU ARG PHE GLY VAL LYS ASN GLY VAL HIS SEQRES 17 A 500 MET VAL PHE ALA SER PHE ILE ARG THR ALA ASN ASP VAL SEQRES 18 A 500 LEU THR ILE ARG GLU VAL LEU GLY GLU GLN GLY LYS ASP SEQRES 19 A 500 VAL LYS ILE ILE VAL LYS ILE GLU ASN GLN GLN GLY VAL SEQRES 20 A 500 ASN ASN PHE ASP GLU ILE LEU LYS VAL THR ASP GLY VAL SEQRES 21 A 500 MET VAL ALA ARG GLY ASP LEU GLY ILE GLU ILE PRO ALA SEQRES 22 A 500 PRO GLU VAL LEU ALA VAL GLN LYS LYS LEU ILE ALA LYS SEQRES 23 A 500 SER ASN LEU ALA GLY LYS PRO VAL ILE CYS ALA THR GLN SEQRES 24 A 500 MET LEU GLU SER MET THR TYR ASN PRO ARG PRO THR ARG SEQRES 25 A 500 ALA GLU VAL SER ASP VAL GLY ASN ALA ILE LEU ASP GLY SEQRES 26 A 500 ALA ASP CYS VAL MET LEU SER GLY GLU THR ALA LYS GLY SEQRES 27 A 500 ASN TYR PRO ILE ASN ALA VAL THR THR MET ALA GLU THR SEQRES 28 A 500 ALA VAL ILE ALA GLU GLN ALA ILE ALA TYR LEU PRO ASN SEQRES 29 A 500 TYR ASP ASP MET ARG ASN CYS THR PRO LYS PRO THR SER SEQRES 30 A 500 THR THR GLU THR VAL ALA ALA SER ALA VAL ALA ALA VAL SEQRES 31 A 500 PHE GLU GLN LYS ALA LYS ALA ILE ILE VAL LEU SER THR SEQRES 32 A 500 SER GLY THR THR PRO ARG LEU VAL SER LYS TYR ARG PRO SEQRES 33 A 500 ASN CYS PRO ILE ILE LEU VAL THR ARG CYS PRO ARG ALA SEQRES 34 A 500 ALA ARG PHE SER HIS LEU TYR ARG GLY VAL PHE PRO PHE SEQRES 35 A 500 VAL PHE GLU LYS GLU PRO VAL SER ASP TRP THR ASP ASP SEQRES 36 A 500 VAL GLU ALA ARG ILE ASN PHE GLY ILE GLU LYS ALA LYS SEQRES 37 A 500 GLU PHE GLY ILE LEU LYS LYS GLY ASP THR TYR VAL SER SEQRES 38 A 500 ILE GLN GLY PHE LYS ALA GLY ALA GLY HIS SER ASN THR SEQRES 39 A 500 LEU GLN VAL SER THR VAL SEQRES 1 B 500 MET SER ARG LEU GLU ARG LEU THR SER LEU ASN VAL VAL SEQRES 2 B 500 ALA GLY SER ASP LEU ARG ARG THR SER ILE ILE GLY THR SEQRES 3 B 500 ILE GLY PRO LYS THR ASN ASN PRO GLU THR LEU VAL ALA SEQRES 4 B 500 LEU ARG LYS ALA GLY LEU ASN ILE VAL ARG MET ASN PHE SEQRES 5 B 500 SER HIS GLY SER TYR GLU TYR HIS LYS SER VAL ILE ASP SEQRES 6 B 500 ASN ALA ARG LYS SER GLU GLU LEU TYR PRO GLY ARG PRO SEQRES 7 B 500 LEU ALA ILE ALA LEU ASP THR LYS GLY PRO GLU ILE ARG SEQRES 8 B 500 THR GLY THR THR THR ASN ASP VAL ASP TYR PRO ILE PRO SEQRES 9 B 500 PRO ASN HIS GLU MET ILE PHE THR THR ASP ASP LYS TYR SEQRES 10 B 500 ALA LYS ALA CYS ASP ASP LYS ILE MET TYR VAL ASP TYR SEQRES 11 B 500 LYS ASN ILE THR LYS VAL ILE SER ALA GLY ARG ILE ILE SEQRES 12 B 500 TYR VAL ASP ASP GLY VAL LEU SER PHE GLN VAL LEU GLU SEQRES 13 B 500 VAL VAL ASP ASP LYS THR LEU LYS VAL LYS ALA LEU ASN SEQRES 14 B 500 ALA GLY LYS ILE CYS SER HIS LYS GLY VAL ASN LEU PRO SEQRES 15 B 500 GLY THR ASP VAL ASP LEU PRO ALA LEU SER GLU LYS ASP SEQRES 16 B 500 LYS GLU ASP LEU ARG PHE GLY VAL LYS ASN GLY VAL HIS SEQRES 17 B 500 MET VAL PHE ALA SER PHE ILE ARG THR ALA ASN ASP VAL SEQRES 18 B 500 LEU THR ILE ARG GLU VAL LEU GLY GLU GLN GLY LYS ASP SEQRES 19 B 500 VAL LYS ILE ILE VAL LYS ILE GLU ASN GLN GLN GLY VAL SEQRES 20 B 500 ASN ASN PHE ASP GLU ILE LEU LYS VAL THR ASP GLY VAL SEQRES 21 B 500 MET VAL ALA ARG GLY ASP LEU GLY ILE GLU ILE PRO ALA SEQRES 22 B 500 PRO GLU VAL LEU ALA VAL GLN LYS LYS LEU ILE ALA LYS SEQRES 23 B 500 SER ASN LEU ALA GLY LYS PRO VAL ILE CYS ALA THR GLN SEQRES 24 B 500 MET LEU GLU SER MET THR TYR ASN PRO ARG PRO THR ARG SEQRES 25 B 500 ALA GLU VAL SER ASP VAL GLY ASN ALA ILE LEU ASP GLY SEQRES 26 B 500 ALA ASP CYS VAL MET LEU SER GLY GLU THR ALA LYS GLY SEQRES 27 B 500 ASN TYR PRO ILE ASN ALA VAL THR THR MET ALA GLU THR SEQRES 28 B 500 ALA VAL ILE ALA GLU GLN ALA ILE ALA TYR LEU PRO ASN SEQRES 29 B 500 TYR ASP ASP MET ARG ASN CYS THR PRO LYS PRO THR SER SEQRES 30 B 500 THR THR GLU THR VAL ALA ALA SER ALA VAL ALA ALA VAL SEQRES 31 B 500 PHE GLU GLN LYS ALA LYS ALA ILE ILE VAL LEU SER THR SEQRES 32 B 500 SER GLY THR THR PRO ARG LEU VAL SER LYS TYR ARG PRO SEQRES 33 B 500 ASN CYS PRO ILE ILE LEU VAL THR ARG CYS PRO ARG ALA SEQRES 34 B 500 ALA ARG PHE SER HIS LEU TYR ARG GLY VAL PHE PRO PHE SEQRES 35 B 500 VAL PHE GLU LYS GLU PRO VAL SER ASP TRP THR ASP ASP SEQRES 36 B 500 VAL GLU ALA ARG ILE ASN PHE GLY ILE GLU LYS ALA LYS SEQRES 37 B 500 GLU PHE GLY ILE LEU LYS LYS GLY ASP THR TYR VAL SER SEQRES 38 B 500 ILE GLN GLY PHE LYS ALA GLY ALA GLY HIS SER ASN THR SEQRES 39 B 500 LEU GLN VAL SER THR VAL HET PGA A1005 9 HET FBP A1007 20 HET MN A1001 1 HET K A1002 1 HET PGA B1006 9 HET FBP B1008 20 HET MN B1003 1 HET K B1004 1 HETNAM PGA 2-PHOSPHOGLYCOLIC ACID HETNAM FBP 1,6-DI-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE HETNAM MN MANGANESE (II) ION HETNAM K POTASSIUM ION HETSYN FBP BETA-FRUCTOSE-1,6-DIPHOSPHATE; FRUCTOSE-1,6- HETSYN 2 FBP BISPHOSPHATE; 1,6-DI-O-PHOSPHONO-BETA-D-FRUCTOSE; 1,6- HETSYN 3 FBP DI-O-PHOSPHONO-D-FRUCTOSE; 1,6-DI-O-PHOSPHONO-FRUCTOSE FORMUL 3 PGA 2(C2 H5 O6 P) FORMUL 4 FBP 2(C6 H14 O12 P2) FORMUL 5 MN 2(MN 2+) FORMUL 6 K 2(K 1+) HELIX 1 1 ARG A 3 THR A 8 1 6 HELIX 2 2 PRO A 29 THR A 31 5 3 HELIX 3 3 PRO A 34 ALA A 43 1 10 HELIX 4 4 TYR A 57 LEU A 73 1 17 HELIX 5 5 ILE A 133 VAL A 136 1 4 HELIX 6 6 GLU A 193 ASN A 205 1 13 HELIX 7 7 ALA A 218 GLY A 232 1 15 HELIX 8 8 GLN A 245 ASN A 248 1 4 HELIX 9 9 PHE A 250 VAL A 256 1 7 HELIX 10 10 ARG A 264 GLU A 270 1 7 HELIX 11 11 ALA A 273 ALA A 290 5 18 HELIX 12 12 GLU A 302 THR A 305 5 4 HELIX 13 13 ARG A 312 ASP A 324 1 13 HELIX 14 14 PRO A 341 GLN A 357 1 17 HELIX 15 15 TYR A 361 MET A 368 1 8 HELIX 16 16 THR A 378 GLN A 393 1 16 HELIX 17 17 THR A 406 LYS A 413 1 8 HELIX 18 18 ALA A 429 LEU A 435 1 7 HELIX 19 19 ASP A 455 GLU A 469 1 15 HELIX 20 20 ARG B 3 THR B 8 1 6 HELIX 21 21 PRO B 29 THR B 31 5 3 HELIX 22 22 PRO B 34 ALA B 43 1 10 HELIX 23 23 TYR B 57 LEU B 73 1 17 HELIX 24 24 ILE B 133 VAL B 136 1 4 HELIX 25 25 GLU B 193 ASN B 205 1 13 HELIX 26 26 ALA B 218 GLY B 232 1 15 HELIX 27 27 GLN B 245 ASN B 248 1 4 HELIX 28 28 PHE B 250 VAL B 256 1 7 HELIX 29 29 ARG B 264 GLU B 270 1 7 HELIX 30 30 ALA B 273 ALA B 290 5 18 HELIX 31 31 GLU B 302 THR B 305 5 4 HELIX 32 32 ARG B 312 ASP B 324 1 13 HELIX 33 33 PRO B 341 GLN B 357 1 17 HELIX 34 34 TYR B 361 MET B 368 1 8 HELIX 35 35 THR B 378 GLN B 393 1 16 HELIX 36 36 THR B 406 LYS B 413 1 8 HELIX 37 37 ALA B 429 LEU B 435 1 7 HELIX 38 38 ASP B 455 GLU B 469 1 15 SHEET 1 A 5 ALA A 82 ASP A 84 0 SHEET 2 A 5 MET A 209 ALA A 212 1 N MET A 209 O LEU A 83 SHEET 3 A 5 LYS A 236 ILE A 241 1 N LYS A 236 O VAL A 210 SHEET 4 A 5 GLY A 259 VAL A 262 1 N GLY A 259 O VAL A 239 SHEET 5 A 5 PRO A 293 CYS A 296 1 N PRO A 293 O VAL A 260 SHEET 1 B 2 GLU A 108 PHE A 111 0 SHEET 2 B 2 LEU A 163 LYS A 166 -1 N VAL A 165 O MET A 109 SHEET 1 C 2 ILE A 142 VAL A 145 0 SHEET 2 C 2 LEU A 150 GLN A 153 -1 N PHE A 152 O ILE A 143 SHEET 1 D 3 ILE A 398 VAL A 400 0 SHEET 2 D 3 THR A 478 GLN A 483 1 N VAL A 480 O ILE A 399 SHEET 3 D 3 THR A 494 THR A 499 -1 N SER A 498 O TYR A 479 SHEET 1 E 2 ILE A 420 THR A 424 0 SHEET 2 E 2 VAL A 439 VAL A 443 1 N PHE A 440 O ILE A 420 SHEET 1 F 5 ALA B 82 ASP B 84 0 SHEET 2 F 5 MET B 209 ALA B 212 1 N MET B 209 O LEU B 83 SHEET 3 F 5 LYS B 236 ILE B 241 1 N LYS B 236 O VAL B 210 SHEET 4 F 5 GLY B 259 VAL B 262 1 N GLY B 259 O VAL B 239 SHEET 5 F 5 PRO B 293 CYS B 296 1 N PRO B 293 O VAL B 260 SHEET 1 G 2 GLU B 108 PHE B 111 0 SHEET 2 G 2 LEU B 163 LYS B 166 -1 N VAL B 165 O MET B 109 SHEET 1 H 2 ILE B 142 VAL B 145 0 SHEET 2 H 2 LEU B 150 GLN B 153 -1 N PHE B 152 O ILE B 143 SHEET 1 I 3 ILE B 398 VAL B 400 0 SHEET 2 I 3 THR B 478 GLN B 483 1 N VAL B 480 O ILE B 399 SHEET 3 I 3 THR B 494 THR B 499 -1 N SER B 498 O TYR B 479 SHEET 1 J 2 ILE B 420 THR B 424 0 SHEET 2 J 2 VAL B 439 VAL B 443 1 N PHE B 440 O ILE B 420 LINK OD1 ASN A 51 K K A1002 1555 1555 2.96 LINK OG SER A 53 K K A1002 1555 1555 3.31 LINK OD1 ASP A 84 K K A1002 1555 1555 2.69 LINK O THR A 85 K K A1002 1555 1555 3.03 LINK OE2 GLU A 242 MN MN A1001 1555 1555 2.13 LINK OD2 ASP A 266 MN MN A1001 1555 1555 2.31 LINK MN MN A1001 O1P PGA A1005 1555 1555 2.15 LINK MN MN A1001 O1 PGA A1005 1555 1555 2.04 LINK K K A1002 O4P PGA A1005 1555 1555 3.29 LINK OD1 ASN B 51 K K B1004 1555 1555 2.98 LINK OG SER B 53 K K B1004 1555 1555 3.39 LINK O ASP B 84 K K B1004 1555 1555 3.67 LINK OD1 ASP B 84 K K B1004 1555 1555 2.69 LINK O THR B 85 K K B1004 1555 1555 2.90 LINK OE2 GLU B 242 MN MN B1003 1555 1555 2.04 LINK OD2 ASP B 266 MN MN B1003 1555 1555 2.31 LINK MN MN B1003 O1P PGA B1006 1555 1555 2.21 LINK MN MN B1003 O1 PGA B1006 1555 1555 2.00 LINK K K B1004 O4P PGA B1006 1555 1555 3.20 CISPEP 1 THR A 372 PRO A 373 0 0.10 CISPEP 2 LYS A 374 PRO A 375 0 0.28 CISPEP 3 THR B 372 PRO B 373 0 0.16 CISPEP 4 LYS B 374 PRO B 375 0 -0.50 CRYST1 109.400 102.700 110.900 90.00 112.30 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009141 0.000000 0.003749 0.00000 SCALE2 0.000000 0.009737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009746 0.00000