HEADER HYDROLASE 02-FEB-98 1A4R TITLE G12V MUTANT OF HUMAN PLACENTAL CDC42 GTPASE IN THE GDP FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: G25K GTP-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: G25K, CDC42 HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 TISSUE: PLACENTA; SOURCE 7 CELLULAR_LOCATION: CYTOPLASM, INNER SIDE OF MEMBRANE; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 11 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_VECTOR: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS HYDROLASE, GTPASE, SIGNAL TRANSDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,I.R.VETTER,A.WITTINGHOFER REVDAT 8 30-OCT-24 1A4R 1 REMARK REVDAT 7 02-AUG-23 1A4R 1 REMARK REVDAT 6 03-NOV-21 1A4R 1 REMARK SEQADV LINK REVDAT 5 24-FEB-09 1A4R 1 VERSN REVDAT 4 12-MAY-00 1A4R 1 HETATM COMPND REMARK REVDAT 3 18-NOV-99 1A4R 1 JRNL REVDAT 2 20-APR-99 1A4R 1 SOURCE COMPND REMARK SEQRES REVDAT 1 02-MAR-99 1A4R 0 JRNL AUTH M.G.RUDOLPH,A.WITTINGHOFER,I.R.VETTER JRNL TITL NUCLEOTIDE BINDING TO THE G12V-MUTANT OF CDC42 INVESTIGATED JRNL TITL 2 BY X-RAY DIFFRACTION AND FLUORESCENCE SPECTROSCOPY: TWO JRNL TITL 3 DIFFERENT NUCLEOTIDE STATES IN ONE CRYSTAL. JRNL REF PROTEIN SCI. V. 8 778 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10211824 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 17611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1738 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 746 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 74 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.042 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.50 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.670 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.040 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.840 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.740 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.980 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : CONSTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : TIP3P.PARAMETER REMARK 3 PARAMETER FILE 3 : MG.PAR REMARK 3 PARAMETER FILE 4 : GDP.PAR REMARK 3 PARAMETER FILE 5 : GPN.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TIP3P.TOP REMARK 3 TOPOLOGY FILE 3 : MG.TOP REMARK 3 TOPOLOGY FILE 4 : GDP.TOP REMARK 3 TOPOLOGY FILE 5 : GPN.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1A4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-97 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07740 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: 4Q21 WITH ALL NON-CONSERVED RESIDUES MUTATED TO REMARK 200 ALANINE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.08000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.32500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.04000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.32500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.12000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.32500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.04000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.32500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.12000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.08000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 191 REMARK 465 LEU B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1002 O HOH A 1032 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 64 OH TYR A 64 7555 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 -79.32 -71.71 REMARK 500 GLN A 74 -11.48 83.10 REMARK 500 LYS A 96 -54.07 -122.55 REMARK 500 PRO A 123 -75.98 -49.77 REMARK 500 SER A 124 -60.30 -29.76 REMARK 500 GLU A 127 -71.76 -61.30 REMARK 500 ASN A 132 42.42 -88.89 REMARK 500 LYS A 153 165.45 174.97 REMARK 500 LEU A 177 109.69 -38.64 REMARK 500 PRO A 180 -84.16 -39.39 REMARK 500 PRO A 182 -6.96 -58.73 REMARK 500 LYS A 184 40.29 -108.41 REMARK 500 ALA B 213 1.19 81.07 REMARK 500 PRO B 229 78.51 -62.26 REMARK 500 GLU B 231 -132.15 -79.94 REMARK 500 PRO B 234 99.24 -50.95 REMARK 500 THR B 235 35.34 -77.71 REMARK 500 ASP B 238 -159.32 -144.47 REMARK 500 ARG B 268 -59.61 -18.08 REMARK 500 PRO B 269 -6.68 -56.40 REMARK 500 GLN B 274 -10.63 83.23 REMARK 500 VAL B 284 5.48 -69.75 REMARK 500 LYS B 296 -70.88 -108.17 REMARK 500 LYS B 331 26.00 -76.70 REMARK 500 ASN B 332 30.98 -177.12 REMARK 500 LYS B 333 27.26 43.70 REMARK 500 LYS B 353 165.62 177.61 REMARK 500 LEU B 377 109.02 -40.25 REMARK 500 GLU B 381 142.09 -30.78 REMARK 500 PRO B 382 66.63 -17.49 REMARK 500 LYS B 383 55.28 39.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 199 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 GDP A 200 O3B 90.4 REMARK 620 3 GDP A 200 O1B 134.6 51.6 REMARK 620 4 HOH A1000 O 60.0 144.8 138.4 REMARK 620 5 HOH A1001 O 90.5 102.5 118.4 96.7 REMARK 620 6 HOH A1002 O 164.0 104.8 56.9 103.9 91.3 REMARK 620 7 HOH A1003 O 70.7 100.3 90.6 54.3 150.4 100.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNH B 400 DBREF 1A4R A 1 191 UNP P60953 CDC42_HUMAN 1 191 DBREF 1A4R B 201 391 UNP P60953 CDC42_HUMAN 1 191 SEQADV 1A4R VAL A 12 UNP P60953 GLY 12 ENGINEERED MUTATION SEQADV 1A4R VAL B 212 UNP P60953 GLY 12 ENGINEERED MUTATION SEQRES 1 A 191 MET GLN THR ILE LYS CYS VAL VAL VAL GLY ASP VAL ALA SEQRES 2 A 191 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 A 191 LYS PHE PRO SER GLU TYR VAL PRO THR VAL PHE ASP ASN SEQRES 4 A 191 TYR ALA VAL THR VAL MET ILE GLY GLY GLU PRO TYR THR SEQRES 5 A 191 LEU GLY LEU PHE ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 A 191 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 A 191 LEU VAL CYS PHE SER VAL VAL SER PRO SER SER PHE GLU SEQRES 8 A 191 ASN VAL LYS GLU LYS TRP VAL PRO GLU ILE THR HIS HIS SEQRES 9 A 191 CYS PRO LYS THR PRO PHE LEU LEU VAL GLY THR GLN ILE SEQRES 10 A 191 ASP LEU ARG ASP ASP PRO SER THR ILE GLU LYS LEU ALA SEQRES 11 A 191 LYS ASN LYS GLN LYS PRO ILE THR PRO GLU THR ALA GLU SEQRES 12 A 191 LYS LEU ALA ARG ASP LEU LYS ALA VAL LYS TYR VAL GLU SEQRES 13 A 191 CYS SER ALA LEU THR GLN LYS GLY LEU LYS ASN VAL PHE SEQRES 14 A 191 ASP GLU ALA ILE LEU ALA ALA LEU GLU PRO PRO GLU PRO SEQRES 15 A 191 LYS LYS SER ARG ARG CYS VAL LEU LEU SEQRES 1 B 191 MET GLN THR ILE LYS CYS VAL VAL VAL GLY ASP VAL ALA SEQRES 2 B 191 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 B 191 LYS PHE PRO SER GLU TYR VAL PRO THR VAL PHE ASP ASN SEQRES 4 B 191 TYR ALA VAL THR VAL MET ILE GLY GLY GLU PRO TYR THR SEQRES 5 B 191 LEU GLY LEU PHE ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 B 191 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 B 191 LEU VAL CYS PHE SER VAL VAL SER PRO SER SER PHE GLU SEQRES 8 B 191 ASN VAL LYS GLU LYS TRP VAL PRO GLU ILE THR HIS HIS SEQRES 9 B 191 CYS PRO LYS THR PRO PHE LEU LEU VAL GLY THR GLN ILE SEQRES 10 B 191 ASP LEU ARG ASP ASP PRO SER THR ILE GLU LYS LEU ALA SEQRES 11 B 191 LYS ASN LYS GLN LYS PRO ILE THR PRO GLU THR ALA GLU SEQRES 12 B 191 LYS LEU ALA ARG ASP LEU LYS ALA VAL LYS TYR VAL GLU SEQRES 13 B 191 CYS SER ALA LEU THR GLN LYS GLY LEU LYS ASN VAL PHE SEQRES 14 B 191 ASP GLU ALA ILE LEU ALA ALA LEU GLU PRO PRO GLU PRO SEQRES 15 B 191 LYS LYS SER ARG ARG CYS VAL LEU LEU HET MG A 199 1 HET GDP A 200 28 HET GNH B 400 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GNH AMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 MG MG 2+ FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 GNH C10 H16 N6 O10 P2 FORMUL 6 HOH *54(H2 O) HELIX 1 1 LYS A 16 THR A 25 1 10 HELIX 2 2 GLU A 62 SER A 71 5 10 HELIX 3 3 PRO A 87 GLU A 95 1 9 HELIX 4 4 TRP A 97 HIS A 104 1 8 HELIX 5 5 ILE A 117 ASP A 121 5 5 HELIX 6 6 PRO A 123 ASN A 132 1 10 HELIX 7 7 PRO A 139 ASP A 148 1 10 HELIX 8 8 LEU A 165 ALA A 176 1 12 HELIX 9 9 PRO A 182 LYS A 184 5 3 HELIX 10 10 LYS B 216 THR B 225 1 10 HELIX 11 11 GLU B 262 TYR B 264 5 3 HELIX 12 12 ARG B 268 LEU B 270 5 3 HELIX 13 13 PRO B 287 GLU B 295 1 9 HELIX 14 14 TRP B 297 HIS B 304 1 8 HELIX 15 15 ILE B 317 LEU B 319 5 3 HELIX 16 16 THR B 325 LYS B 328 1 4 HELIX 17 17 PRO B 339 LEU B 349 1 11 HELIX 18 18 LEU B 365 ALA B 376 1 12 HELIX 19 19 GLU B 381 LYS B 383 5 3 SHEET 1 A 6 TYR A 154 GLU A 156 0 SHEET 2 A 6 PRO A 109 THR A 115 1 N LEU A 112 O VAL A 155 SHEET 3 A 6 VAL A 77 SER A 83 1 N PHE A 78 O PRO A 109 SHEET 4 A 6 THR A 3 GLY A 10 1 N VAL A 7 O VAL A 77 SHEET 5 A 6 GLU A 49 PHE A 56 1 N THR A 52 O ILE A 4 SHEET 6 A 6 ASN A 39 ILE A 46 -1 N ILE A 46 O GLU A 49 SHEET 1 B 6 TYR B 354 GLU B 356 0 SHEET 2 B 6 PRO B 309 THR B 315 1 N LEU B 312 O VAL B 355 SHEET 3 B 6 VAL B 277 SER B 283 1 N PHE B 278 O PRO B 309 SHEET 4 B 6 GLN B 202 GLY B 210 1 N VAL B 207 O VAL B 277 SHEET 5 B 6 GLU B 249 PHE B 256 1 N THR B 252 O GLN B 202 SHEET 6 B 6 ASN B 239 ILE B 246 -1 N ILE B 246 O GLU B 249 SSBOND 1 CYS A 105 CYS A 188 1555 1555 2.03 SSBOND 2 CYS B 305 CYS B 388 1555 1555 2.03 LINK OG1 THR A 17 MG MG A 199 1555 1555 2.33 LINK MG MG A 199 O3B GDP A 200 1555 1555 2.18 LINK MG MG A 199 O1B GDP A 200 1555 1555 3.10 LINK MG MG A 199 O HOH A1000 1555 1555 3.01 LINK MG MG A 199 O HOH A1001 1555 1555 1.78 LINK MG MG A 199 O HOH A1002 1555 1555 2.43 LINK MG MG A 199 O HOH A1003 1555 1555 1.96 SITE 1 AC1 7 THR A 17 ASP A 57 GDP A 200 HOH A1000 SITE 2 AC1 7 HOH A1001 HOH A1002 HOH A1003 SITE 1 AC2 20 ASP A 11 ALA A 13 VAL A 14 GLY A 15 SITE 2 AC2 20 LYS A 16 THR A 17 CYS A 18 GLN A 116 SITE 3 AC2 20 ASP A 118 LEU A 119 ARG A 147 SER A 158 SITE 4 AC2 20 ALA A 159 LEU A 160 MG A 199 HOH A1001 SITE 5 AC2 20 HOH A1002 HOH A1006 HOH A1013 HOH A1045 SITE 1 AC3 14 VAL B 212 ALA B 213 GLY B 215 LYS B 216 SITE 2 AC3 14 THR B 217 CYS B 218 PHE B 228 GLN B 316 SITE 3 AC3 14 ASP B 318 LEU B 319 ARG B 347 SER B 358 SITE 4 AC3 14 ALA B 359 LEU B 360 CRYST1 98.650 98.650 104.160 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010137 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009601 0.00000 MTRIX1 1 0.563300 0.824500 -0.053200 2.46980 1 MTRIX2 1 0.823100 -0.565600 -0.051100 -4.05160 1 MTRIX3 1 -0.072200 -0.015000 -0.997300 6.26700 1