HEADER HYDROLASE 18-FEB-98 1A5V TITLE ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3 AND MN TITLE 2 CATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN; COMPND 5 EC: 2.7.7.49; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: P03354 FRAGMENT OF POLYPROTEIN POL-RSVP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN); SOURCE 3 ORGANISM_TAXID: 11889; SOURCE 4 STRAIN: SCHMIDT-RUPPIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRC23IN(52-207); SOURCE 8 OTHER_DETAILS: SEE JRNL REFERENCE KEYWDS HYDROLASE, ENDONUCLEASE, HIV-1 INTEGRASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,F.YANG,J.ALEXANDRATOS,A.WLODAWER REVDAT 6 22-MAY-24 1A5V 1 REMARK REVDAT 5 02-AUG-23 1A5V 1 REMARK SEQADV REVDAT 4 13-JUL-11 1A5V 1 VERSN REVDAT 3 24-FEB-09 1A5V 1 VERSN REVDAT 2 01-APR-03 1A5V 1 JRNL REVDAT 1 27-MAY-98 1A5V 0 JRNL AUTH J.LUBKOWSKI,F.YANG,J.ALEXANDRATOS,A.WLODAWER,H.ZHAO, JRNL AUTH 2 T.R.BURKE JR.,N.NEAMATI,Y.POMMIER,G.MERKEL,A.M.SKALKA JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF AVIAN SARCOMA VIRUS JRNL TITL 2 INTEGRASE WITH A BOUND HIV-1 INTEGRASE-TARGETED INHIBITOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 95 4831 1998 JRNL REFN ISSN 0027-8424 JRNL PMID 9560188 JRNL DOI 10.1073/PNAS.95.9.4831 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 13364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1306 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1348 REMARK 3 BIN R VALUE (WORKING SET) : 0.2208 REMARK 3 BIN FREE R VALUE : 0.2399 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.620 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX_FY.PRO REMARK 3 PARAMETER FILE 2 : PARAM_SIMPLE.INHIBITOR REMARK 3 PARAMETER FILE 3 : PARAM19.SOLV REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX_FY.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH_SIMPLE.INHIBITOR REMARK 3 TOPOLOGY FILE 3 : TOPH19.SOLV REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ATOMIC OCCUPANCIES OF DISORDERED ATOMS ARE SET TO 0.00 IN REMARK 3 THE COORDINATES, REMARK 4 REMARK 4 1A5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-97 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.160 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35400 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1ASV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 10% ISOPROPANOL, 0.1M NA REMARK 280 HEPES, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.53250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.22200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.22200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.79875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.22200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.22200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.26625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.22200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.22200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.79875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.22200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.22200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.26625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.53250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR MAINTAINS THAT THE BIOLOGICAL UNIT IS NOT YET REMARK 300 KNOWN. THE MINIMUM MULTIMER IS BELIEVED TO CONTAIN AT LEAST THE REMARK 300 DIMER GENERATED BT THE TRANSFORMATION IN REMARK 350, SHOWN IN BOTH REMARK 300 HIV-1 AND ASV INTEGRASE CORE DOMAIN STRUCTURES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.06500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 66.44400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 66.44400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 121.59750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 52 REMARK 465 ARG A 53 REMARK 465 GLU A 200 REMARK 465 ARG A 201 REMARK 465 GLY A 202 REMARK 465 GLU A 203 REMARK 465 ASN A 204 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 THR A 207 REMARK 465 ASN A 208 REMARK 465 LEU A 209 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 54 REMARK 475 PRO A 147 REMARK 475 GLY A 148 REMARK 475 ASN A 149 REMARK 475 SER A 150 REMARK 475 GLN A 151 REMARK 475 GLY A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 147 -159.16 -66.60 REMARK 500 LYS A 178 -115.87 -116.71 REMARK 500 ASN A 197 -62.83 -100.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 2 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD1 REMARK 620 2 ASP A 121 OD2 90.6 REMARK 620 3 HOH A 210 O 87.3 89.9 REMARK 620 4 HOH A 211 O 94.2 90.2 178.6 REMARK 620 5 HOH A 212 O 84.5 175.0 90.9 89.1 REMARK 620 6 HOH A 213 O 171.9 97.4 94.2 84.4 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ACTIVE SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y3 A 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED REMARK 999 HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL REMARK 999 STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, REMARK 999 "ROUS SARCOMA VIRUS SCHMIDT-RUPPIN B", COMPARED TO REMARK 999 "POL-RSVP" SEQUENCE DIFFERS AT TWO POSITIONS WITH THE REMARK 999 CONSERVATIVE AMINO ACID RESIDUE DIFFERENCES NOTED REMARK 999 (VAL -> ALA 101 AND ARG -> LYS 166). DBREF 1A5V A 52 207 UNP P03354 POL_RSVP 624 779 SEQADV 1A5V ALA A 101 UNP P03354 VAL 673 VARIANT SEQADV 1A5V LYS A 166 UNP P03354 ARG 738 VARIANT SEQRES 1 A 158 PRO ARG GLY LEU GLY PRO LEU GLN ILE TRP GLN THR ASP SEQRES 2 A 158 PHE THR LEU GLU PRO ARG MET ALA PRO ARG SER TRP LEU SEQRES 3 A 158 ALA VAL THR VAL ASP THR ALA SER SER ALA ILE VAL VAL SEQRES 4 A 158 THR GLN HIS GLY ARG VAL THR SER VAL ALA ALA GLN HIS SEQRES 5 A 158 HIS TRP ALA THR ALA ILE ALA VAL LEU GLY ARG PRO LYS SEQRES 6 A 158 ALA ILE LYS THR ASP ASN GLY SER CYS PHE THR SER LYS SEQRES 7 A 158 SER THR ARG GLU TRP LEU ALA ARG TRP GLY ILE ALA HIS SEQRES 8 A 158 THR THR GLY ILE PRO GLY ASN SER GLN GLY GLN ALA MET SEQRES 9 A 158 VAL GLU ARG ALA ASN ARG LEU LEU LYS ASP LYS ILE ARG SEQRES 10 A 158 VAL LEU ALA GLU GLY ASP GLY PHE MET LYS ARG ILE PRO SEQRES 11 A 158 THR SER LYS GLN GLY GLU LEU LEU ALA LYS ALA MET TYR SEQRES 12 A 158 ALA LEU ASN HIS PHE GLU ARG GLY GLU ASN THR LYS THR SEQRES 13 A 158 ASN LEU HET MN A 2 1 HET Y3 A 1 23 HETNAM MN MANGANESE (II) ION HETNAM Y3 4-ACETYLAMINO-5-HYDROXYNAPHTHALENE-2,7-DISULFONIC ACID FORMUL 2 MN MN 2+ FORMUL 3 Y3 C12 H11 N O8 S2 FORMUL 4 HOH *172(H2 O) HELIX 1 1 PRO A 69 MET A 71 5 3 HELIX 2 2 SER A 98 LEU A 112 1 15 HELIX 3 3 SER A 124 THR A 127 1 4 HELIX 4 4 LYS A 129 TRP A 138 1 10 HELIX 5 5 ALA A 154 GLY A 173 1 20 HELIX 6 6 THR A 182 ASN A 197 1 16 SHEET 1 A 5 ILE A 88 HIS A 93 0 SHEET 2 A 5 TRP A 76 ASP A 82 -1 N THR A 80 O VAL A 89 SHEET 3 A 5 ILE A 60 LEU A 67 -1 N THR A 66 O LEU A 77 SHEET 4 A 5 ALA A 117 LYS A 119 1 N ALA A 117 O TRP A 61 SHEET 5 A 5 ALA A 141 THR A 143 1 N ALA A 141 O ILE A 118 LINK MN MN A 2 OD1 ASP A 64 1555 1555 2.22 LINK MN MN A 2 OD2 ASP A 121 1555 1555 2.23 LINK MN MN A 2 O HOH A 210 1555 1555 2.10 LINK MN MN A 2 O HOH A 211 1555 1555 2.18 LINK MN MN A 2 O HOH A 212 1555 1555 2.17 LINK MN MN A 2 O HOH A 213 1555 1555 2.51 CISPEP 1 ALA A 72 PRO A 73 0 6.71 SITE 1 ACT 3 ASP A 64 ASP A 121 GLU A 157 SITE 1 AC1 6 ASP A 64 ASP A 121 HOH A 210 HOH A 211 SITE 2 AC1 6 HOH A 212 HOH A 213 SITE 1 AC2 10 GLN A 62 LYS A 119 GLY A 145 ILE A 146 SITE 2 AC2 10 ALA A 154 MET A 155 HOH A 267 HOH A 307 SITE 3 AC2 10 HOH A 362 HOH A 364 CRYST1 66.444 66.444 81.065 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012336 0.00000