HEADER TRANSCRIPTION TERMINATION 05-MAR-98 1A63 TITLE THE NMR STRUCTURE OF THE RNA BINDING DOMAIN OF E.COLI RHO FACTOR TITLE 2 SUGGESTS POSSIBLE RNA-PROTEIN INTERACTIONS, 10 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA BINDING DOMAIN, RESIDUES 1 - 130; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21 (DE3); SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: T7; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 12 EXPRESSION_SYSTEM_GENE: RHO KEYWDS TRANSCRIPTION TERMINATION, TERMINATION, RNA BINDING DOMAIN, KEYWDS 2 TRANSCRIPTION REGULATION, OB FOLD EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.M.BRIERCHECK,T.C.WOOD,T.J.ALLISON,J.P.RICHARDSON,G.S.RULE REVDAT 4 10-APR-24 1A63 1 REMARK REVDAT 3 06-NOV-19 1A63 1 REMARK REVDAT 2 24-FEB-09 1A63 1 VERSN REVDAT 1 27-MAY-98 1A63 0 JRNL AUTH D.M.BRIERCHECK,T.C.WOOD,T.J.ALLISON,J.P.RICHARDSON,G.S.RULE JRNL TITL THE NMR STRUCTURE OF THE RNA BINDING DOMAIN OF E. COLI RHO JRNL TITL 2 FACTOR SUGGESTS POSSIBLE RNA-PROTEIN INTERACTIONS. JRNL REF NAT.STRUCT.BIOL. V. 5 393 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9587002 JRNL DOI 10.1038/NSB0598-393 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.J.ALLISON,T.C.WOOD,D.M.BRIERCHECK,F.RASTINEJAD, REMARK 1 AUTH 2 J.P.RICHARDSON,G.S.RULE REMARK 1 TITL CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN FROM REMARK 1 TITL 2 TRANSCRIPTION TERMINATION FACTOR RHO REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH D.M.BRIERCHECK,T.J.ALLISON,J.P.RICHARDSON,J.F.ELLENA, REMARK 1 AUTH 2 T.C.WOOD,G.S.RULE REMARK 1 TITL 1H, 15N AND 13C RESONANCE ASSIGNMENTS AND SECONDARY REMARK 1 TITL 2 STRUCTURE DETERMINATION OF THE RNA-BINDING DOMAIN OF E.COLI REMARK 1 TITL 3 RHO PROTEIN REMARK 1 REF J.BIOMOL.NMR V. 8 429 1996 REMARK 1 REFN ISSN 0925-2738 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE GENERATED USING REMARK 3 DISTANCE GEOMETRY FOLLOWED BY SIMULATED ANNEALING. THE 10 LOWEST REMARK 3 ENERGY STRUCTURES ARE REPORTED. THE RMSD FOR ALL BACKBONE REMARK 3 INVOLVED IN SECONDARY STRUCTURE REMARK 4 REMARK 4 1A63 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170438. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY TRIPLE RESONANCE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS; DMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, X-PLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 140 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 26 H MET A 29 1.46 REMARK 500 HH22 ARG A 66 O LEU A 73 1.50 REMARK 500 O PRO A 83 H ARG A 87 1.53 REMARK 500 O GLU A 108 H TYR A 110 1.54 REMARK 500 O LEU A 58 H GLY A 61 1.56 REMARK 500 O ALA A 43 H GLY A 46 1.56 REMARK 500 O THR A 4 HD21 ASN A 8 1.56 REMARK 500 HG SER A 12 OE1 GLU A 13 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 31 -34.54 -35.91 REMARK 500 1 ARG A 66 -154.21 177.12 REMARK 500 1 SER A 67 -148.90 -65.20 REMARK 500 1 ASP A 69 -162.18 -65.64 REMARK 500 1 SER A 70 -74.58 -126.74 REMARK 500 1 SER A 71 -10.93 78.20 REMARK 500 1 TYR A 72 -45.06 75.38 REMARK 500 1 ALA A 74 -148.63 -80.68 REMARK 500 1 ASP A 78 -158.44 -77.12 REMARK 500 1 PRO A 104 -93.90 -72.17 REMARK 500 1 GLU A 108 -78.68 -85.72 REMARK 500 1 ARG A 109 -59.91 65.08 REMARK 500 1 LEU A 114 -55.48 -127.84 REMARK 500 1 ASN A 120 51.61 39.61 REMARK 500 1 PRO A 124 44.73 -71.79 REMARK 500 1 GLU A 125 -153.40 -177.51 REMARK 500 1 ASN A 126 -150.38 167.00 REMARK 500 1 ALA A 127 33.17 172.88 REMARK 500 1 ASN A 129 140.65 63.27 REMARK 500 2 GLN A 59 -37.05 -32.74 REMARK 500 2 ARG A 66 -179.97 -178.42 REMARK 500 2 SER A 67 -159.12 -71.51 REMARK 500 2 ALA A 68 -85.76 -120.42 REMARK 500 2 ASP A 69 56.06 -69.09 REMARK 500 2 SER A 71 -14.84 169.47 REMARK 500 2 TYR A 72 -42.57 76.64 REMARK 500 2 ALA A 74 -156.86 -79.54 REMARK 500 2 ASP A 78 -154.05 -70.74 REMARK 500 2 PRO A 104 -99.18 -68.48 REMARK 500 2 ARG A 109 -52.61 66.37 REMARK 500 2 LEU A 114 -59.55 -132.79 REMARK 500 2 ASN A 120 -31.54 -32.80 REMARK 500 2 PHE A 121 59.08 -157.29 REMARK 500 2 PRO A 124 31.24 -79.58 REMARK 500 2 GLU A 125 -134.67 -179.12 REMARK 500 2 ASN A 126 -83.41 167.58 REMARK 500 2 ALA A 127 -165.84 -179.55 REMARK 500 3 LEU A 23 63.98 -103.52 REMARK 500 3 GLU A 24 -167.71 -57.11 REMARK 500 3 GLN A 59 -36.72 -38.24 REMARK 500 3 ARG A 66 -162.75 178.26 REMARK 500 3 SER A 67 -156.80 -72.74 REMARK 500 3 ALA A 68 -90.86 -127.30 REMARK 500 3 ASP A 69 48.36 -73.36 REMARK 500 3 SER A 71 -26.90 177.86 REMARK 500 3 TYR A 72 -43.54 76.41 REMARK 500 3 ALA A 74 -157.69 -79.18 REMARK 500 3 ASP A 78 -152.91 -76.37 REMARK 500 3 PRO A 104 -152.06 -71.65 REMARK 500 3 ARG A 109 -41.42 68.84 REMARK 500 REMARK 500 THIS ENTRY HAS 173 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 28 0.24 SIDE CHAIN REMARK 500 1 ARG A 30 0.27 SIDE CHAIN REMARK 500 1 ARG A 66 0.23 SIDE CHAIN REMARK 500 1 ARG A 87 0.32 SIDE CHAIN REMARK 500 1 ARG A 88 0.32 SIDE CHAIN REMARK 500 1 ARG A 92 0.27 SIDE CHAIN REMARK 500 1 ARG A 102 0.31 SIDE CHAIN REMARK 500 1 ARG A 109 0.28 SIDE CHAIN REMARK 500 1 ARG A 128 0.19 SIDE CHAIN REMARK 500 2 ARG A 28 0.17 SIDE CHAIN REMARK 500 2 ARG A 30 0.14 SIDE CHAIN REMARK 500 2 ARG A 66 0.30 SIDE CHAIN REMARK 500 2 ARG A 87 0.27 SIDE CHAIN REMARK 500 2 ARG A 88 0.31 SIDE CHAIN REMARK 500 2 ARG A 92 0.21 SIDE CHAIN REMARK 500 2 ARG A 102 0.31 SIDE CHAIN REMARK 500 2 ARG A 109 0.26 SIDE CHAIN REMARK 500 2 ARG A 128 0.31 SIDE CHAIN REMARK 500 3 ARG A 28 0.31 SIDE CHAIN REMARK 500 3 ARG A 30 0.19 SIDE CHAIN REMARK 500 3 ARG A 87 0.30 SIDE CHAIN REMARK 500 3 ARG A 88 0.32 SIDE CHAIN REMARK 500 3 ARG A 92 0.30 SIDE CHAIN REMARK 500 3 ARG A 102 0.31 SIDE CHAIN REMARK 500 3 ARG A 128 0.28 SIDE CHAIN REMARK 500 4 ARG A 28 0.23 SIDE CHAIN REMARK 500 4 ARG A 30 0.31 SIDE CHAIN REMARK 500 4 ARG A 66 0.13 SIDE CHAIN REMARK 500 4 ARG A 87 0.26 SIDE CHAIN REMARK 500 4 ARG A 88 0.17 SIDE CHAIN REMARK 500 4 ARG A 92 0.25 SIDE CHAIN REMARK 500 4 ARG A 102 0.32 SIDE CHAIN REMARK 500 4 ARG A 128 0.32 SIDE CHAIN REMARK 500 5 ARG A 28 0.22 SIDE CHAIN REMARK 500 5 ARG A 30 0.15 SIDE CHAIN REMARK 500 5 ARG A 87 0.08 SIDE CHAIN REMARK 500 5 ARG A 88 0.31 SIDE CHAIN REMARK 500 5 ARG A 92 0.30 SIDE CHAIN REMARK 500 5 ARG A 102 0.23 SIDE CHAIN REMARK 500 5 ARG A 109 0.28 SIDE CHAIN REMARK 500 5 ARG A 128 0.28 SIDE CHAIN REMARK 500 6 ARG A 28 0.31 SIDE CHAIN REMARK 500 6 ARG A 30 0.32 SIDE CHAIN REMARK 500 6 ARG A 66 0.31 SIDE CHAIN REMARK 500 6 ARG A 87 0.14 SIDE CHAIN REMARK 500 6 ARG A 88 0.21 SIDE CHAIN REMARK 500 6 ARG A 92 0.25 SIDE CHAIN REMARK 500 6 ARG A 102 0.32 SIDE CHAIN REMARK 500 6 ARG A 109 0.30 SIDE CHAIN REMARK 500 6 ARG A 128 0.30 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 84 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1A63 A 1 130 UNP P03002 RHO_ECOLI 1 130 SEQRES 1 A 130 MET ASN LEU THR GLU LEU LYS ASN THR PRO VAL SER GLU SEQRES 2 A 130 LEU ILE THR LEU GLY GLU ASN MET GLY LEU GLU ASN LEU SEQRES 3 A 130 ALA ARG MET ARG LYS GLN ASP ILE ILE PHE ALA ILE LEU SEQRES 4 A 130 LYS GLN HIS ALA LYS SER GLY GLU ASP ILE PHE GLY ASP SEQRES 5 A 130 GLY VAL LEU GLU ILE LEU GLN ASP GLY PHE GLY PHE LEU SEQRES 6 A 130 ARG SER ALA ASP SER SER TYR LEU ALA GLY PRO ASP ASP SEQRES 7 A 130 ILE TYR VAL SER PRO SER GLN ILE ARG ARG PHE ASN LEU SEQRES 8 A 130 ARG THR GLY ASP THR ILE SER GLY LYS ILE ARG PRO PRO SEQRES 9 A 130 LYS GLU GLY GLU ARG TYR PHE ALA LEU LEU LYS VAL ASN SEQRES 10 A 130 GLU VAL ASN PHE ASP LYS PRO GLU ASN ALA ARG ASN LYS HELIX 1 1 LEU A 3 ASN A 8 1 6 HELIX 2 2 VAL A 11 MET A 21 1 11 HELIX 3 3 LEU A 26 ARG A 28 5 3 HELIX 4 4 LYS A 31 LYS A 44 1 14 HELIX 5 5 PRO A 83 PHE A 89 1 7 SHEET 1 A 3 PHE A 50 VAL A 54 0 SHEET 2 A 3 THR A 96 LYS A 100 -1 N GLY A 99 O GLY A 51 SHEET 3 A 3 LYS A 115 VAL A 119 -1 N GLU A 118 O SER A 98 SHEET 1 B 2 GLY A 63 LEU A 65 0 SHEET 2 B 2 ILE A 79 VAL A 81 -1 N VAL A 81 O GLY A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1