HEADER COMPLEX (IMMUNOGLOBULIN/AUTOANTIGEN) 18-FEB-97 1ADQ TITLE CRYSTAL STRUCTURE OF A HUMAN IGM RHEUMATOID FACTOR FAB IN COMPLEX WITH TITLE 2 ITS AUTOANTIGEN IGG FC COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG4 REA FC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FC; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGM-LAMBDA RF-AN FAB (LIGHT CHAIN); COMPND 7 CHAIN: L; COMPND 8 FRAGMENT: FAB; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: IGM-LAMBDA RF-AN FAB (HEAVY CHAIN); COMPND 11 CHAIN: H; COMPND 12 FRAGMENT: FAB SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: B-LYMPHOCYTE; SOURCE 6 CELLULAR_LOCATION: EXTRACELLULAR; SOURCE 7 OTHER_DETAILS: ISOLATED FROM THE SERA OF PATIENTS WITH MULTIPLE SOURCE 8 MYELOMA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 CELL_LINE: RF-AN; SOURCE 14 CELL: B-LYMPHOCYTE; SOURCE 15 CELLULAR_LOCATION: EXTRACELLULAR; SOURCE 16 OTHER_DETAILS: RF-AN CELL LINE WAS PREPARED FROM PERIPHERAL BLOOD SOURCE 17 LYMPHOCYTES OF AN RA PATIENT BY TRANSFORMATION WITH EPSTEIN-BARR SOURCE 18 VIRUS; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 CELL_LINE: RF-AN; SOURCE 24 CELL: B-LYMPHOCYTE; SOURCE 25 CELLULAR_LOCATION: EXTRACELLULAR; SOURCE 26 OTHER_DETAILS: RF-AN CELL LINE WAS PREPARED FROM PERIPHERAL BLOOD SOURCE 27 LYMPHOCYTES OF AN RA PATIENT BY TRANSFORMATION WITH EPSTEIN-BARR SOURCE 28 VIRUS KEYWDS COMPLEX (IMMUNOGLOBULIN-AUTOANTIGEN), RHEUMATOID FACTOR AUTO-ANTIBODY KEYWDS 2 COMPLEX, COMPLEX (IMMUNOGLOBULIN-AUTOANTIGEN) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.L.CORPER,M.J.TAUSSIG,B.J.SUTTON REVDAT 3 02-AUG-23 1ADQ 1 SEQADV REVDAT 2 24-FEB-09 1ADQ 1 VERSN REVDAT 1 16-SEP-98 1ADQ 0 JRNL AUTH A.L.CORPER,M.K.SOHI,V.R.BONAGURA,M.STEINITZ,R.JEFFERIS, JRNL AUTH 2 A.FEINSTEIN,D.BEALE,M.J.TAUSSIG,B.J.SUTTON JRNL TITL STRUCTURE OF HUMAN IGM RHEUMATOID FACTOR FAB BOUND TO ITS JRNL TITL 2 AUTOANTIGEN IGG FC REVEALS A NOVEL TOPOLOGY OF JRNL TITL 3 ANTIBODY-ANTIGEN INTERACTION. JRNL REF NAT.STRUCT.BIOL. V. 4 374 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9145108 JRNL DOI 10.1038/NSB0597-374 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.K.SOHI,A.L.CORPER,T.WAN,M.STEINITZ,R.JEFFERIS,D.BEALE, REMARK 1 AUTH 2 M.HE,A.FEINSTEIN,B.J.SUTTON,M.J.TAUSSIG REMARK 1 TITL CRYSTALLIZATION OF A COMPLEX BETWEEN THE FAB FRAGMENT OF A REMARK 1 TITL 2 HUMAN IMMUNOGLOBULIN M (IGM) RHEUMATOID FACTOR (RF-AN) AND REMARK 1 TITL 3 THE FC FRAGMENT OF HUMAN IGG4 REMARK 1 REF IMMUNOLOGY V. 88 636 1996 REMARK 1 REFN ISSN 0019-2805 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 80.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 11603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 756 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 902 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.51 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.180 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.47 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.060 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUPED B-FACTOR REFINEMENT REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 DISORDERED REGION A263-A300 WAS MODELED STEREOCHEMICALLY. REMARK 3 FAB IN COMPLEX WITH ITS AUTOANTIGEN IGG FC. REMARK 3 REMARK 3 CONSTANT DOMAINS OF RF-AN SHOWED SIGNIFICANT DISORDER REMARK 3 AND WERE PARTLY MODELED STEREOCHEMICALLY. REMARK 3 REMARK 3 RESIDUES L51 AND L171 OCCUR IN WELL DEFINED REGIONS OF THE REMARK 3 STRUCTURE (OCCUPANCY = 1). BOTH OCCUR IN LOOP REGIONS AND REMARK 3 CONTINUE TO HAVE DISALLOWED PHI/PSI VALUES EVEN AFTER REMARK 3 REBUILDING. REMARK 4 REMARK 4 1ADQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-94 REMARK 200 TEMPERATURE (KELVIN) : 278 REMARK 200 PH : APPROX. REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, CCP4 REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14109 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1FC1, 2IG2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY HANGING DROP REMARK 280 VAPOR DIFFUSION. THE HANGING DROPS CONSISTED OF 2UL OF PROTEIN REMARK 280 SOLUTION CONTAINING EACH PROTEIN AT 1MG/ML IN 0.1 % SODIUM AZIDE, REMARK 280 20MM TRIS-HCL AT PH 7.0, MIXED WITH AN EQUAL VOLUME OF THE REMARK 280 RESERVOIR SOLUTION TO BE SCREENED. CRYSTALS WERE OBTAINED WITH REMARK 280 RESERVOIR SOLUTIONS CONTAINING 17.5 - 22.5 % (W/V) POLYETHYLENE REMARK 280 GLYCOL (MEAN MW 8000) IN 0.1 % SODIUM AZIDE, 100MM TRIS-HCL, PH REMARK 280 7.0, AT TEMPERATURES BETWEEN 17.5 AND 21.5 (CELSIUS)., VAPOR REMARK 280 DIFFUSION - HANGING DROP, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.17500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.97500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.17500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.97500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO A 238 REMARK 475 VAL A 263 REMARK 475 VAL A 264 REMARK 475 ASP A 265 REMARK 475 VAL A 266 REMARK 475 SER A 267 REMARK 475 GLN A 268 REMARK 475 GLU A 269 REMARK 475 ASP A 270 REMARK 475 PRO A 271 REMARK 475 GLN A 272 REMARK 475 VAL A 273 REMARK 475 GLN A 274 REMARK 475 PHE A 275 REMARK 475 ASN A 276 REMARK 475 TRP A 277 REMARK 475 TYR A 278 REMARK 475 VAL A 279 REMARK 475 ASP A 280 REMARK 475 GLY A 281 REMARK 475 VAL A 282 REMARK 475 GLN A 283 REMARK 475 VAL A 284 REMARK 475 HIS A 285 REMARK 475 ASN A 286 REMARK 475 ALA A 287 REMARK 475 LYS A 288 REMARK 475 THR A 289 REMARK 475 LYS A 290 REMARK 475 PRO A 291 REMARK 475 ARG A 292 REMARK 475 GLU A 293 REMARK 475 GLN A 294 REMARK 475 GLN A 295 REMARK 475 PHE A 296 REMARK 475 ASN A 297 REMARK 475 SER A 298 REMARK 475 THR A 299 REMARK 475 TYR A 300 REMARK 475 GLY A 327 REMARK 475 GLN L 167 REMARK 475 GLU L 213 REMARK 475 CYS L 214 REMARK 475 SER L 215 REMARK 475 GLY H 114 REMARK 475 CYS H 127 REMARK 475 GLU H 128 REMARK 475 ASN H 129 REMARK 475 SER H 130 REMARK 475 ASN H 133 REMARK 475 PRO H 134 REMARK 475 SER H 135 REMARK 475 SER H 136 REMARK 475 THR H 137 REMARK 475 VAL H 138 REMARK 475 ALA H 139 REMARK 475 TYR H 159 REMARK 475 LYS H 160 REMARK 475 ASN H 161 REMARK 475 ASN H 162 REMARK 475 SER H 163 REMARK 475 ASP H 164 REMARK 475 ILE H 165 REMARK 475 SER H 168 REMARK 475 ARG H 179 REMARK 475 GLY H 180 REMARK 475 GLY H 183 REMARK 475 LYS H 184 REMARK 475 PRO H 194 REMARK 475 SER H 195 REMARK 475 LYS H 196 REMARK 475 ASP H 197 REMARK 475 VAL H 198 REMARK 475 MET H 199 REMARK 475 GLN H 200 REMARK 475 GLY H 201 REMARK 475 THR H 202 REMARK 475 ASN H 203 REMARK 475 GLU H 204 REMARK 475 HIS H 205 REMARK 475 HIS H 213 REMARK 475 PRO H 214 REMARK 475 ASN H 215 REMARK 475 GLY H 216 REMARK 475 ASN H 217 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 262 CG1 CG2 REMARK 480 GLN A 311 OE1 NE2 REMARK 480 LYS A 320 CB CG CD CE NZ REMARK 480 LYS A 322 CB CG CD CE NZ REMARK 480 VAL A 323 CG1 CG2 REMARK 480 LYS A 326 CA C O CB CG CD CE REMARK 480 LYS A 326 NZ REMARK 480 SER A 331 CB OG REMARK 480 ILE A 332 CD1 REMARK 480 LYS A 334 CB CG CD CE NZ REMARK 480 ALA A 339 CB REMARK 480 LYS A 340 CB CG CD CE NZ REMARK 480 GLN A 347 CG CD OE1 NE2 REMARK 480 SER A 354 OG REMARK 480 GLN A 355 CD OE1 NE2 REMARK 480 GLN A 386 CB CG CD OE1 NE2 REMARK 480 SER A 400 CB OG REMARK 480 TYR L 2 CB OH REMARK 480 VAL L 13 CG1 REMARK 480 GLN L 17 CB CG CD OE1 NE2 REMARK 480 ARG L 20 CG CD NE CZ NH1 NH2 REMARK 480 ASN L 26 CB CG OD1 ND2 REMARK 480 ASN L 27 O CB CG OD1 ND2 REMARK 480 ILE L 28 O REMARK 480 SER L 30 C O CB OG REMARK 480 GLN L 42 CB CG CD OE1 NE2 REMARK 480 SER L 52 OG REMARK 480 ILE L 58 CD1 REMARK 480 ASN L 69 CB CG OD1 ND2 REMARK 480 THR L 70 O REMARK 480 SER L 76 CB OG REMARK 480 ARG L 77 CB CG CD NE CZ NH1 NH2 REMARK 480 VAL L 90 CG2 REMARK 480 SER L 93 CB OG REMARK 480 SER L 94 CB OG REMARK 480 HIS L 95B CB CG ND1 CD2 CE1 NE2 REMARK 480 GLY L 107 CA C O REMARK 480 GLN L 108 CB CG CD OE1 NE2 REMARK 480 LYS L 110 O CG CD CE NZ REMARK 480 ALA L 111 N CB REMARK 480 THR L 116 CG2 REMARK 480 PRO L 119 CB REMARK 480 GLU L 123 CB CG CD OE1 OE2 REMARK 480 GLU L 124 C O CB CG CD OE1 OE2 REMARK 480 LEU L 125 CB CG CD1 CD2 REMARK 480 GLN L 126 CB CG CD OE1 NE2 REMARK 480 LYS L 129 CB CG CD CE NZ REMARK 480 VAL L 133 CG1 CG2 REMARK 480 ASP L 138 OD2 REMARK 480 TYR L 140 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR L 140 OH REMARK 480 ALA L 143 CB REMARK 480 ALA L 150 CB REMARK 480 SER L 153 OG REMARK 480 VAL L 155 CB CG1 CG2 REMARK 480 LYS L 156 CG CD CE NZ REMARK 480 GLU L 160 CG CD OE1 OE2 REMARK 480 THR L 163 OG1 CG2 REMARK 480 LYS L 166 CG CD CE NZ REMARK 480 SER L 168 N CB OG REMARK 480 ASN L 170 CB CG OD1 ND2 REMARK 480 TYR L 173 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 SER L 180 CB OG REMARK 480 GLU L 184 CD OE1 OE2 REMARK 480 GLN L 185 CB CG CD OE1 NE2 REMARK 480 GLN L 195 OE1 REMARK 480 THR L 208 CB OG1 CG2 REMARK 480 GLN H 13 CB CG CD OE1 NE2 REMARK 480 ARG H 16 CB CG CD NE CZ NH1 NH2 REMARK 480 SER H 25 CB OG REMARK 480 LYS H 43 CB CG CD CE NZ REMARK 480 GLU H 46 CB CG CD OE1 OE2 REMARK 480 SER H 52 OG REMARK 480 THR H 54 OG1 CG2 REMARK 480 VAL H 63 CG1 REMARK 480 LYS H 64 C O CD CE NZ REMARK 480 ALA H 88 CB REMARK 480 GLN H 105 CB CG CD OE1 NE2 REMARK 480 ILE H 107 CG2 CD1 REMARK 480 SER H 113 OG REMARK 480 SER H 115 CA REMARK 480 ALA H 116 CA CB REMARK 480 SER H 117 OG REMARK 480 ALA H 118 CA C O CB REMARK 480 THR H 120 N CG2 REMARK 480 LEU H 121 CG CD1 CD2 REMARK 480 SER H 126 CA C O CB OG REMARK 480 VAL H 140 CG1 REMARK 480 GLN H 145 CB CG CD OE1 NE2 REMARK 480 ASP H 146 N CB CG OD1 OD2 REMARK 480 LEU H 148 CB CG CD1 CD2 REMARK 480 ASP H 150 C O CG OD2 REMARK 480 SER H 151 N CB OG REMARK 480 ILE H 152 CG1 CG2 CD1 REMARK 480 THR H 153 CB OG1 CG2 REMARK 480 PHE H 154 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 SER H 156 CB OG REMARK 480 LYS H 158 CA C O CB CG CD CE REMARK 480 LYS H 158 NZ REMARK 480 SER H 169 O CB OG REMARK 480 ARG H 172 CG CD NE CZ NH1 NH2 REMARK 480 VAL H 177 CG2 REMARK 480 LEU H 178 C O REMARK 480 TYR H 185 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR H 185 OH REMARK 480 ALA H 186 CB REMARK 480 SER H 189 OG REMARK 480 GLN H 190 CG CD OE1 NE2 REMARK 480 LEU H 192 CG CD1 CD2 REMARK 480 LEU H 193 C O CB CG CD1 CD2 REMARK 480 VAL H 207 CG1 CG2 REMARK 480 LYS H 209 CB CG CD CE NZ REMARK 480 GLN H 212 CB CG CD OE1 NE2 REMARK 480 LYS H 218 CB CG CD CE NZ REMARK 480 GLU H 220 CB CG CD OE1 OE2 REMARK 480 LYS H 221 CG CD CE NZ REMARK 480 ASP H 222 CG OD1 OD2 REMARK 480 VAL H 223 CB CG1 CG2 REMARK 480 PRO H 223A CB CG CD REMARK 480 LEU H 223B CB CG CD1 CD2 OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 265 76.73 64.84 REMARK 500 GLU A 269 -125.65 -177.37 REMARK 500 PRO A 271 35.63 -72.51 REMARK 500 ASP A 280 51.89 34.13 REMARK 500 HIS A 285 -68.25 62.80 REMARK 500 ALA A 287 -129.63 58.90 REMARK 500 PRO A 291 87.06 -66.15 REMARK 500 ARG A 292 86.09 -68.12 REMARK 500 GLU A 293 89.72 -55.66 REMARK 500 ASN A 297 -95.63 70.37 REMARK 500 TYR A 300 115.53 174.93 REMARK 500 HIS A 310 -63.34 -26.89 REMARK 500 ASN A 325 148.00 -173.22 REMARK 500 LYS A 326 81.75 -67.99 REMARK 500 ALA A 339 98.75 -52.74 REMARK 500 SER A 383 -105.81 -94.64 REMARK 500 ASP A 401 10.28 -68.59 REMARK 500 THR A 437 144.04 -175.90 REMARK 500 ASP L 51 -58.91 75.27 REMARK 500 ARG L 61 -9.87 -58.54 REMARK 500 ALA L 84 -169.58 -169.77 REMARK 500 ALA L 143 119.01 -164.96 REMARK 500 GLN L 167 -74.78 52.37 REMARK 500 SER L 168 -32.02 -167.34 REMARK 500 ASN L 171 -50.31 74.53 REMARK 500 SER L 188 30.71 -93.94 REMARK 500 HIS L 198 77.24 -104.26 REMARK 500 GLU L 199 79.37 61.83 REMARK 500 PRO L 211 -5.57 -57.07 REMARK 500 SER H 7 -86.24 -129.44 REMARK 500 PRO H 14 152.60 -44.43 REMARK 500 PRO H 41 88.98 -45.18 REMARK 500 THR H 54 -14.73 71.13 REMARK 500 VAL H 63 -27.83 -145.95 REMARK 500 ARG H 96 84.34 -156.37 REMARK 500 SER H 113 -79.30 -79.19 REMARK 500 SER H 115 -84.98 -81.86 REMARK 500 SER H 126 -96.44 -106.48 REMARK 500 SER H 130 -57.35 -173.74 REMARK 500 ALA H 139 -115.53 54.55 REMARK 500 ASP H 150 -116.14 -54.82 REMARK 500 SER H 163 90.08 -69.58 REMARK 500 ASP H 164 -72.76 -56.68 REMARK 500 SER H 195 179.27 62.21 REMARK 500 GLN H 200 -62.55 72.06 REMARK 500 HIS H 205 139.49 -172.19 REMARK 500 ASN H 215 95.89 67.35 REMARK 500 PRO H 223A -161.81 -64.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 1ADQ A 238 443 UNP P01861 IGHG4_HUMAN 118 323 DBREF 1ADQ L 2 215 PDB 1ADQ 1ADQ 2 215 DBREF 1ADQ H 1 223B PDB 1ADQ 1ADQ 1 223 SEQADV 1ADQ GLN A 272 UNP P01861 GLU 152 CONFLICT SEQADV 1ADQ GLN A 283 UNP P01861 GLU 163 CONFLICT SEQADV 1ADQ GLN A 294 UNP P01861 GLU 174 CONFLICT SEQADV 1ADQ ASN A 312 UNP P01861 ASP 192 CONFLICT SEQADV 1ADQ ASP A 315 UNP P01861 ASN 195 CONFLICT SEQRES 1 A 206 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 2 A 206 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 3 A 206 VAL ASP VAL SER GLN GLU ASP PRO GLN VAL GLN PHE ASN SEQRES 4 A 206 TRP TYR VAL ASP GLY VAL GLN VAL HIS ASN ALA LYS THR SEQRES 5 A 206 LYS PRO ARG GLU GLN GLN PHE ASN SER THR TYR ARG VAL SEQRES 6 A 206 VAL SER VAL LEU THR VAL LEU HIS GLN ASN TRP LEU ASP SEQRES 7 A 206 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS GLY LEU SEQRES 8 A 206 PRO SER SER ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 9 A 206 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 10 A 206 GLN GLU GLU MET THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 11 A 206 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 12 A 206 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 13 A 206 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 14 A 206 TYR SER ARG LEU THR VAL ASP LYS SER ARG TRP GLN GLU SEQRES 15 A 206 GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 16 A 206 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SEQRES 1 L 213 TYR VAL LEU THR GLN PRO PRO SER VAL SER VAL ALA PRO SEQRES 2 L 213 GLY GLN THR ALA ARG ILE THR CYS GLY GLY ASN ASN ILE SEQRES 3 L 213 GLY SER LYS SER VAL HIS TRP TYR GLN GLN LYS PRO GLY SEQRES 4 L 213 GLN ALA PRO VAL LEU VAL VAL TYR ASP ASP SER ASP ARG SEQRES 5 L 213 PRO PRO GLY ILE PRO GLU ARG PHE SER GLY SER ASN SER SEQRES 6 L 213 GLY ASN THR ALA THR LEU THR ILE SER ARG VAL GLU ALA SEQRES 7 L 213 GLY ASP GLU ALA ASP TYR TYR CYS GLN VAL TRP ASP SER SEQRES 8 L 213 SER SER ASP HIS ALA VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 213 THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 L 213 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 L 213 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 L 213 ALA VAL THR VAL ALA TRP LYS ALA ASP GLY SER PRO VAL SEQRES 13 L 213 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 L 213 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 L 213 PRO GLU GLN TRP LYS SER HIS LYS SER TYR SER CYS GLN SEQRES 16 L 213 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 L 213 PRO THR GLU CYS SER SEQRES 1 H 225 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 225 PRO GLY ARG SER LEU ARG LEU SER CYS VAL THR SER GLY SEQRES 3 H 225 PHE THR PHE ASP ASP TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 225 SER PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE SER SEQRES 5 H 225 TRP ASN THR GLY THR ILE ILE TYR ALA ASP SER VAL LYS SEQRES 6 H 225 GLY ARG PHE ILE ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 225 LEU TYR LEU GLN MET ASN SER LEU ARG VAL GLU ASP THR SEQRES 8 H 225 ALA LEU TYR TYR CYS ALA LYS THR ARG SER TYR VAL VAL SEQRES 9 H 225 ALA ALA GLU TYR TYR PHE HIS TYR TRP GLY GLN GLY ILE SEQRES 10 H 225 LEU VAL THR VAL SER SER GLY SER ALA SER ALA PRO THR SEQRES 11 H 225 LEU PHE PRO LEU VAL SER CYS GLU ASN SER ASN PRO SER SEQRES 12 H 225 SER THR VAL ALA VAL GLY CYS LEU ALA GLN ASP PHE LEU SEQRES 13 H 225 PRO ASP SER ILE THR PHE SER TRP LYS TYR LYS ASN ASN SEQRES 14 H 225 SER ASP ILE SER SER THR ARG GLY PHE PRO SER VAL LEU SEQRES 15 H 225 ARG GLY GLY LYS TYR ALA ALA THR SER GLN VAL LEU LEU SEQRES 16 H 225 PRO SER LYS ASP VAL MET GLN GLY THR ASN GLU HIS VAL SEQRES 17 H 225 VAL CYS LYS VAL GLN HIS PRO ASN GLY ASN LYS GLU LYS SEQRES 18 H 225 ASP VAL PRO LEU HELIX 1 1 PRO A 247 LEU A 251 1 5 HELIX 2 2 HIS A 310 LEU A 314 1 5 HELIX 3 3 GLU A 357 THR A 359 5 3 HELIX 4 4 LYS A 414 GLN A 418 1 5 HELIX 5 5 ILE L 28 SER L 30 5 3 HELIX 6 6 ALA L 80 ASP L 82 5 3 HELIX 7 7 SER L 122 GLN L 126 1 5 HELIX 8 8 PRO L 183 SER L 188 1 6 HELIX 9 9 PHE H 29 ASP H 31 5 3 HELIX 10 10 ASN H 73 LYS H 75 5 3 HELIX 11 11 VAL H 84 ASP H 86 5 3 SHEET 1 A 3 SER A 239 PHE A 243 0 SHEET 2 A 3 GLU A 258 VAL A 264 -1 N VAL A 264 O SER A 239 SHEET 3 A 3 VAL A 302 THR A 307 -1 N LEU A 306 O VAL A 259 SHEET 1 B 3 ILE A 332 ILE A 336 0 SHEET 2 B 3 TYR A 319 LYS A 326 -1 N VAL A 323 O ILE A 332 SHEET 3 B 3 ASP A 270 PHE A 275 -1 N GLN A 274 O SER A 324 SHEET 1 C 4 GLN A 347 LEU A 351 0 SHEET 2 C 4 GLN A 362 PHE A 372 -1 N LYS A 370 O GLN A 347 SHEET 3 C 4 PHE A 404 ASP A 413 -1 N VAL A 412 O VAL A 363 SHEET 4 C 4 TYR A 391 THR A 393 -1 N LYS A 392 O ARG A 409 SHEET 1 D 3 ALA A 378 GLU A 382 0 SHEET 2 D 3 PHE A 423 MET A 428 -1 N MET A 428 O ALA A 378 SHEET 3 D 3 THR A 437 LEU A 441 -1 N LEU A 441 O PHE A 423 SHEET 1 E 3 LEU L 4 GLN L 6 0 SHEET 2 E 3 ALA L 19 GLY L 25 -1 N GLY L 24 O THR L 5 SHEET 3 E 3 THR L 70 ILE L 75 -1 N ILE L 75 O ALA L 19 SHEET 1 F 2 SER L 9 ALA L 14 0 SHEET 2 F 2 LYS L 103 LEU L 106A 1 N LYS L 103 O VAL L 11 SHEET 1 G 4 HIS L 95B PHE L 98 0 SHEET 2 G 4 ASP L 85 ASP L 92 -1 N ASP L 92 O HIS L 95B SHEET 3 G 4 HIS L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 4 G 4 VAL L 45 VAL L 48 -1 N VAL L 48 O TRP L 35 SHEET 1 H 4 SER L 114 PHE L 118 0 SHEET 2 H 4 ALA L 130 SER L 137 -1 N SER L 137 O SER L 114 SHEET 3 H 4 ALA L 175 LEU L 181 -1 N LEU L 181 O ALA L 130 SHEET 4 H 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 178 SHEET 1 I 3 THR L 145 ALA L 150 0 SHEET 2 I 3 TYR L 192 HIS L 198 -1 N THR L 197 O THR L 145 SHEET 3 I 3 SER L 203 VAL L 209 -1 N VAL L 209 O TYR L 192 SHEET 1 J 4 GLN H 3 GLU H 6 0 SHEET 2 J 4 LEU H 18 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 J 4 SER H 77 MET H 82 -1 N MET H 82 O LEU H 18 SHEET 4 J 4 PHE H 67 ASP H 72 -1 N ASP H 72 O SER H 77 SHEET 1 K 5 ILE H 107 VAL H 109 0 SHEET 2 K 5 ALA H 88 LYS H 94 -1 N TYR H 90 O ILE H 107 SHEET 3 K 5 MET H 34 SER H 40 -1 N GLN H 39 O LEU H 89 SHEET 4 K 5 LEU H 45 ILE H 51 -1 N ILE H 51 O MET H 34 SHEET 5 K 5 ILE H 57 TYR H 59 -1 N ILE H 58 O GLY H 50 SHEET 1 L 4 THR H 120 VAL H 125 0 SHEET 2 L 4 VAL H 140 PHE H 147 -1 N GLN H 145 O THR H 120 SHEET 3 L 4 LYS H 184 VAL H 191 -1 N VAL H 191 O VAL H 140 SHEET 4 L 4 VAL H 177 ARG H 179 -1 N ARG H 179 O LYS H 184 SHEET 1 M 3 ILE H 152 LYS H 158 0 SHEET 2 M 3 VAL H 206 HIS H 213 -1 N GLN H 212 O THR H 153 SHEET 3 M 3 LYS H 218 VAL H 223 -1 N VAL H 223 O VAL H 206 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.03 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 6 CYS H 142 CYS H 208 1555 1555 2.03 CISPEP 1 TYR A 373 PRO A 374 0 0.51 CISPEP 2 TYR L 140 PRO L 141 0 -0.03 CISPEP 3 LEU H 148 PRO H 149 0 -0.35 CRYST1 160.350 81.950 64.240 90.00 98.27 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006236 0.000000 0.000906 0.00000 SCALE2 0.000000 0.012203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015730 0.00000