HEADER DNA 31-MAR-97 1AG3 TITLE DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING PROPANODEOXYGUANOSINE OPPOSITE TITLE 2 A TWO-BASE DELETION, NMR, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*TP*CP*GP*CP*PP*CP*GP*GP*CP*AP*TP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING COMPND 6 PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE DELETION; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*AP*TP*GP*CP*CP*GP*CP*GP*AP*T)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING COMPND 12 PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE DELETION SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES KEYWDS DNA ADDUCTS, DNA CONFORMATION, NMR SPECTROSCOPY, STRUCTURAL KEYWDS 2 REFINEMENT, PROPANODEOXYGUANOSINE, SALMONELLA TYPHIMURIUM HISD3052, KEYWDS 3 DEOXYRIBONUCLEIC ACID, DNA EXPDTA SOLUTION NMR AUTHOR J.P.WEISENSEEL,M.P.STONE REVDAT 4 22-MAY-24 1AG3 1 REMARK REVDAT 3 16-FEB-22 1AG3 1 REMARK SEQRES LINK REVDAT 2 24-FEB-09 1AG3 1 VERSN REVDAT 1 07-JUL-97 1AG3 0 JRNL AUTH J.P.WEISENSEEL,J.G.MOE,G.R.REDDY,L.J.MARNETT,M.P.STONE JRNL TITL STRUCTURE OF A DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING JRNL TITL 2 PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE DELETION IN THE JRNL TITL 3 (CPG)3 FRAME SHIFT HOTSPOT OF SALMONELLA TYPHIMURIUM JRNL TITL 4 HISD3052 DETERMINED BY 1H NMR AND RESTRAINED MOLECULAR JRNL TITL 5 DYNAMICS. JRNL REF BIOCHEMISTRY V. 34 50 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7819223 JRNL DOI 10.1021/BI00001A007 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.G.MOE,G.R.REDDY,L.J.MARNETT,M.P.STONE REMARK 1 TITL 1H NMR CHARACTERIZATION OF A DUPLEX OLIGODEOXYNUCLEOTIDE REMARK 1 TITL 2 CONTAINING PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE REMARK 1 TITL 3 DELETION IN THE (CPG)3 FRAMESHIFT HOTSPOT OF SALMONELLA REMARK 1 TITL 4 TYPHIMURIUM HISD3052 REMARK 1 REF CHEM.RES.TOXICOL. V. 7 319 1994 REMARK 1 REFN ISSN 0893-228X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1AG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170772. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; 2QF-COSY; AND TOCSY; : REMARK 210 NOESY; ANDANO; ` OPP REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, X-PLOR, MARDIGRAS, CORMA REMARK 210 METHOD USED : NOE-RESTRAINED MOLECULAR REMARK 210 DYNAMICS/SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : CROMA BEST FIT REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A -2 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA A -2 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT A -1 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG A 2 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG A 6 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG A 6 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 DG A 7 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 7 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG A 7 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 DC A 8 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA A 9 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT A 10 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG A 11 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG A 11 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG A 11 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 DC B 12 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA B 13 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA B 13 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT B 14 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 15 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG B 15 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG B 15 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 DC B 16 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC B 17 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG B 18 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG B 18 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG B 18 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 DC B 19 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG B 20 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B 20 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG B 20 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 DA B 21 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA B 21 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT B 22 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 1AG3 A -2 11 PDB 1AG3 1AG3 -2 11 DBREF 1AG3 B 12 22 PDB 1AG3 1AG3 12 22 SEQRES 1 A 13 DA DT DC DG DC P DC DG DG DC DA DT DG SEQRES 1 B 11 DC DA DT DG DC DC DG DC DG DA DT MODRES 1AG3 P A 4 DG HET P A 4 40 HETNAM P 2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE FORMUL 1 P C13 H18 N5 O7 P LINK O3' DC A 3 P P A 4 1555 1555 1.61 LINK O3' P A 4 P DC A 5 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000