HEADER GROWTH FACTOR 25-MAR-97 1AGQ TITLE GLIAL CELL-DERIVED NEUROTROPHIC FACTOR FROM RAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLIAL CELL-DERIVED NEUROTROPHIC FACTOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: GDNF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: BRAIN; SOURCE 6 CELL: GLIA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GROWTH FACTOR, NEUROTROPHIC FACTOR, CYSTINE KNOT EXPDTA X-RAY DIFFRACTION AUTHOR C.EIGENBROT,N.GERBER REVDAT 2 24-FEB-09 1AGQ 1 VERSN REVDAT 1 05-JUN-97 1AGQ 0 JRNL AUTH C.EIGENBROT,N.GERBER JRNL TITL X-RAY STRUCTURE OF GLIAL CELL-DERIVED NEUROTROPHIC JRNL TITL 2 FACTOR AT 1.9 A RESOLUTION AND IMPLICATIONS FOR JRNL TITL 3 RECEPTOR BINDING. JRNL REF NAT.STRUCT.BIOL. V. 4 435 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9187648 JRNL DOI 10.1038/NSB0697-435 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.D.SUN,D.R.DAVIES REMARK 1 TITL THE CYSTINE-KNOT GROWTH-FACTOR SUPERFAMILY REMARK 1 REF ANNU.REV.BIOPHYS.BIOMOL. V. 24 269 1995 REMARK 1 REF 2 STRUCT. REMARK 1 REFN ISSN 1056-8700 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.F.LIN,D.H.DOHERTY,J.D.LILE,S.BEKTESH,F.COLLINS REMARK 1 TITL A GLIAL CELL LINE-DERIVED NEUROTROPHIC FACTOR FOR REMARK 1 TITL 2 MIDBRAIN DOPAMINERGIC NEURONS REMARK 1 REF SCIENCE V. 260 1130 1993 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 43042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4402 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3258 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 347 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2941 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.47 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.79 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.050 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.980 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.170 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 9.100 ; 9.000 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESOLUTION-DEPENDENT WEIGHTING REMARK 3 SCHEME USED. BULK SOLVENT MODEL USED. THERE ARE 139 ATOMS REMARK 3 ASSIGNED ZERO OCCUPANCY. SOME OF THESE WERE USED WITH UNIT REMARK 3 OCCUPANCY AT SOME STAGE OF REFINEMENT, BUT ARE NOW ASSIGNED REMARK 3 ZERO OCCUPANCY. THE SEGMENT C 116 - C 120 IS POORLY MODELED REMARK 3 USING A SINGLE MAIN CHAIN CONFORMATION. THERE IS RESIDUAL REMARK 3 ELECTRON DENSITY SUGGESTING ADDITIONAL CONFORMATION(S), BUT NO REMARK 3 ATTEMPT TO MODEL THEM HAS BEEN MADE. ALL RESIDUE NUMBERS IN REMARK 3 THIS ENTRY ARE GREATER (BY ONE) THAN THOSE USED IN THE JOURNAL REMARK 3 ARTICLE DESCRIBING THIS WORK (JRNL RECORD). REMARK 4 REMARK 4 1AGQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : PRINCETON 2K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46219 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22800 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: XSIGHT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.8 M LICL, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.77500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 12 REMARK 465 ARG A 13 REMARK 465 GLU A 14 REMARK 465 ARG A 15 REMARK 465 ASN A 16 REMARK 465 ARG A 17 REMARK 465 GLN A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 PRO A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 SER A 27 REMARK 465 ARG A 28 REMARK 465 GLY A 29 REMARK 465 LYS A 30 REMARK 465 GLY A 31 REMARK 465 ARG A 32 REMARK 465 ARG A 33 REMARK 465 GLY A 34 REMARK 465 GLN A 35 REMARK 465 ARG A 36 REMARK 465 GLY A 37 REMARK 465 LYS A 38 REMARK 465 ARG A 92 REMARK 465 LEU A 93 REMARK 465 THR A 94 REMARK 465 SER A 95 REMARK 465 ASP A 96 REMARK 465 LYS A 97 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 ALA B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 LEU B 10 REMARK 465 PRO B 11 REMARK 465 ARG B 12 REMARK 465 ARG B 13 REMARK 465 GLU B 14 REMARK 465 ARG B 15 REMARK 465 ASN B 16 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 ALA B 19 REMARK 465 ALA B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 PRO B 24 REMARK 465 GLU B 25 REMARK 465 ASN B 26 REMARK 465 SER B 27 REMARK 465 ARG B 28 REMARK 465 GLY B 29 REMARK 465 LYS B 30 REMARK 465 GLY B 31 REMARK 465 ARG B 32 REMARK 465 ARG B 33 REMARK 465 GLY B 34 REMARK 465 GLN B 35 REMARK 465 ARG B 36 REMARK 465 GLY B 37 REMARK 465 ASP B 96 REMARK 465 LYS B 97 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 PRO C 3 REMARK 465 ASP C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 ALA C 7 REMARK 465 ALA C 8 REMARK 465 ALA C 9 REMARK 465 LEU C 10 REMARK 465 PRO C 11 REMARK 465 ARG C 12 REMARK 465 ARG C 13 REMARK 465 GLU C 14 REMARK 465 ARG C 15 REMARK 465 ASN C 16 REMARK 465 ARG C 17 REMARK 465 GLN C 18 REMARK 465 ALA C 19 REMARK 465 ALA C 20 REMARK 465 ALA C 21 REMARK 465 ALA C 22 REMARK 465 SER C 23 REMARK 465 PRO C 24 REMARK 465 GLU C 25 REMARK 465 ASN C 26 REMARK 465 SER C 27 REMARK 465 ARG C 28 REMARK 465 GLY C 29 REMARK 465 LYS C 30 REMARK 465 GLY C 31 REMARK 465 ARG C 32 REMARK 465 ARG C 33 REMARK 465 GLY C 34 REMARK 465 GLN C 35 REMARK 465 ARG C 36 REMARK 465 GLY C 37 REMARK 465 LYS C 38 REMARK 465 ASN C 39 REMARK 465 ARG C 40 REMARK 465 THR C 94 REMARK 465 SER C 95 REMARK 465 ASP C 96 REMARK 465 LYS C 97 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 PRO D 3 REMARK 465 ASP D 4 REMARK 465 LYS D 5 REMARK 465 GLN D 6 REMARK 465 ALA D 7 REMARK 465 ALA D 8 REMARK 465 ALA D 9 REMARK 465 LEU D 10 REMARK 465 PRO D 11 REMARK 465 ARG D 12 REMARK 465 ARG D 13 REMARK 465 GLU D 14 REMARK 465 ARG D 15 REMARK 465 ASN D 16 REMARK 465 ARG D 17 REMARK 465 GLN D 18 REMARK 465 ALA D 19 REMARK 465 ALA D 20 REMARK 465 ALA D 21 REMARK 465 ALA D 22 REMARK 465 SER D 23 REMARK 465 PRO D 24 REMARK 465 GLU D 25 REMARK 465 ASN D 26 REMARK 465 SER D 27 REMARK 465 ARG D 28 REMARK 465 GLY D 29 REMARK 465 LYS D 30 REMARK 465 GLY D 31 REMARK 465 ARG D 32 REMARK 465 ARG D 33 REMARK 465 GLY D 34 REMARK 465 GLN D 35 REMARK 465 ARG D 36 REMARK 465 GLY D 37 REMARK 465 LYS D 38 REMARK 465 ASN D 39 REMARK 465 ARG D 40 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP D 96 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 61 CG CD CE NZ REMARK 480 SER A 72 OG REMARK 480 GLU A 74 CG CD OE1 OE2 REMARK 480 LYS A 85 CG CD CE NZ REMARK 480 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 480 VAL A 98 CB CG1 CG2 REMARK 480 ARG A 125 NE CZ NH1 NH2 REMARK 480 LYS A 130 NZ REMARK 480 LYS B 38 CG CD CE NZ REMARK 480 GLU B 59 CG CD OE1 OE2 REMARK 480 LYS B 61 CG CD CE NZ REMARK 480 SER B 72 OG REMARK 480 GLU B 74 CG CD OE1 OE2 REMARK 480 ARG B 89 CG CD NE CZ NH1 NH2 REMARK 480 THR B 94 CA REMARK 480 SER B 95 OG REMARK 480 VAL B 98 CG1 CG2 REMARK 480 LYS B 126 CE NZ REMARK 480 GLU C 59 CG CD OE1 OE2 REMARK 480 LYS C 61 CG CD CE NZ REMARK 480 GLU C 74 CD OE1 OE2 REMARK 480 GLU C 77 CG CD OE1 OE2 REMARK 480 LYS C 82 CD CE NZ REMARK 480 LYS C 85 CG CD CE NZ REMARK 480 SER C 88 OG REMARK 480 ARG C 89 NE CZ NH1 NH2 REMARK 480 ARG C 91 CG CD NE CZ NH1 NH2 REMARK 480 ARG C 92 CG CD NE CZ NH1 NH2 REMARK 480 GLU D 59 CG CD OE1 OE2 REMARK 480 LYS D 61 CG CD CE NZ REMARK 480 GLU D 77 CG CD OE1 OE2 REMARK 480 LYS D 82 CG CD CE NZ REMARK 480 LYS D 85 CG CD CE NZ REMARK 480 ARG D 89 CG CD NE CZ NH1 NH2 REMARK 480 LYS D 97 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 89 -8.14 -58.29 REMARK 500 LEU B 93 94.58 -162.52 REMARK 500 ARG C 91 19.54 58.22 REMARK 500 ASP C 117 38.00 -87.89 REMARK 500 SER D 95 131.82 -39.83 REMARK 500 ASP D 96 -87.26 -19.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 1AGQ A 2 135 UNP Q07731 GDNF_RAT 78 211 DBREF 1AGQ B 2 135 UNP Q07731 GDNF_RAT 78 211 DBREF 1AGQ C 2 135 UNP Q07731 GDNF_RAT 78 211 DBREF 1AGQ D 2 135 UNP Q07731 GDNF_RAT 78 211 SEQRES 1 A 135 MET SER PRO ASP LYS GLN ALA ALA ALA LEU PRO ARG ARG SEQRES 2 A 135 GLU ARG ASN ARG GLN ALA ALA ALA ALA SER PRO GLU ASN SEQRES 3 A 135 SER ARG GLY LYS GLY ARG ARG GLY GLN ARG GLY LYS ASN SEQRES 4 A 135 ARG GLY CYS VAL LEU THR ALA ILE HIS LEU ASN VAL THR SEQRES 5 A 135 ASP LEU GLY LEU GLY TYR GLU THR LYS GLU GLU LEU ILE SEQRES 6 A 135 PHE ARG TYR CYS SER GLY SER CYS GLU ALA ALA GLU THR SEQRES 7 A 135 MET TYR ASP LYS ILE LEU LYS ASN LEU SER ARG SER ARG SEQRES 8 A 135 ARG LEU THR SER ASP LYS VAL GLY GLN ALA CYS CYS ARG SEQRES 9 A 135 PRO VAL ALA PHE ASP ASP ASP LEU SER PHE LEU ASP ASP SEQRES 10 A 135 SER LEU VAL TYR HIS ILE LEU ARG LYS HIS SER ALA LYS SEQRES 11 A 135 ARG CYS GLY CYS ILE SEQRES 1 B 135 MET SER PRO ASP LYS GLN ALA ALA ALA LEU PRO ARG ARG SEQRES 2 B 135 GLU ARG ASN ARG GLN ALA ALA ALA ALA SER PRO GLU ASN SEQRES 3 B 135 SER ARG GLY LYS GLY ARG ARG GLY GLN ARG GLY LYS ASN SEQRES 4 B 135 ARG GLY CYS VAL LEU THR ALA ILE HIS LEU ASN VAL THR SEQRES 5 B 135 ASP LEU GLY LEU GLY TYR GLU THR LYS GLU GLU LEU ILE SEQRES 6 B 135 PHE ARG TYR CYS SER GLY SER CYS GLU ALA ALA GLU THR SEQRES 7 B 135 MET TYR ASP LYS ILE LEU LYS ASN LEU SER ARG SER ARG SEQRES 8 B 135 ARG LEU THR SER ASP LYS VAL GLY GLN ALA CYS CYS ARG SEQRES 9 B 135 PRO VAL ALA PHE ASP ASP ASP LEU SER PHE LEU ASP ASP SEQRES 10 B 135 SER LEU VAL TYR HIS ILE LEU ARG LYS HIS SER ALA LYS SEQRES 11 B 135 ARG CYS GLY CYS ILE SEQRES 1 C 135 MET SER PRO ASP LYS GLN ALA ALA ALA LEU PRO ARG ARG SEQRES 2 C 135 GLU ARG ASN ARG GLN ALA ALA ALA ALA SER PRO GLU ASN SEQRES 3 C 135 SER ARG GLY LYS GLY ARG ARG GLY GLN ARG GLY LYS ASN SEQRES 4 C 135 ARG GLY CYS VAL LEU THR ALA ILE HIS LEU ASN VAL THR SEQRES 5 C 135 ASP LEU GLY LEU GLY TYR GLU THR LYS GLU GLU LEU ILE SEQRES 6 C 135 PHE ARG TYR CYS SER GLY SER CYS GLU ALA ALA GLU THR SEQRES 7 C 135 MET TYR ASP LYS ILE LEU LYS ASN LEU SER ARG SER ARG SEQRES 8 C 135 ARG LEU THR SER ASP LYS VAL GLY GLN ALA CYS CYS ARG SEQRES 9 C 135 PRO VAL ALA PHE ASP ASP ASP LEU SER PHE LEU ASP ASP SEQRES 10 C 135 SER LEU VAL TYR HIS ILE LEU ARG LYS HIS SER ALA LYS SEQRES 11 C 135 ARG CYS GLY CYS ILE SEQRES 1 D 135 MET SER PRO ASP LYS GLN ALA ALA ALA LEU PRO ARG ARG SEQRES 2 D 135 GLU ARG ASN ARG GLN ALA ALA ALA ALA SER PRO GLU ASN SEQRES 3 D 135 SER ARG GLY LYS GLY ARG ARG GLY GLN ARG GLY LYS ASN SEQRES 4 D 135 ARG GLY CYS VAL LEU THR ALA ILE HIS LEU ASN VAL THR SEQRES 5 D 135 ASP LEU GLY LEU GLY TYR GLU THR LYS GLU GLU LEU ILE SEQRES 6 D 135 PHE ARG TYR CYS SER GLY SER CYS GLU ALA ALA GLU THR SEQRES 7 D 135 MET TYR ASP LYS ILE LEU LYS ASN LEU SER ARG SER ARG SEQRES 8 D 135 ARG LEU THR SER ASP LYS VAL GLY GLN ALA CYS CYS ARG SEQRES 9 D 135 PRO VAL ALA PHE ASP ASP ASP LEU SER PHE LEU ASP ASP SEQRES 10 D 135 SER LEU VAL TYR HIS ILE LEU ARG LYS HIS SER ALA LYS SEQRES 11 D 135 ARG CYS GLY CYS ILE FORMUL 5 HOH *285(H2 O) HELIX 1 1 VAL A 51 LEU A 54 5 4 HELIX 2 2 MET A 79 SER A 90 1 12 HELIX 3 3 VAL B 51 LEU B 54 5 4 HELIX 4 4 MET B 79 ARG B 89 1 11 HELIX 5 5 VAL C 51 LEU C 54 5 4 HELIX 6 6 MET C 79 ARG C 89 1 11 HELIX 7 7 VAL D 51 LEU D 54 5 4 HELIX 8 8 MET D 79 ARG D 89 1 11 SHEET 1 A 2 VAL A 43 ASN A 50 0 SHEET 2 A 2 GLU A 63 SER A 70 -1 N SER A 70 O VAL A 43 SHEET 1 B 2 LEU A 112 LEU A 115 0 SHEET 2 B 2 TYR A 121 LEU A 124 -1 N LEU A 124 O LEU A 112 SHEET 1 C 2 VAL B 43 ASN B 50 0 SHEET 2 C 2 GLU B 63 SER B 70 -1 N SER B 70 O VAL B 43 SHEET 1 D 2 LEU B 112 LEU B 115 0 SHEET 2 D 2 TYR B 121 LEU B 124 -1 N LEU B 124 O LEU B 112 SHEET 1 E 2 VAL C 43 ASN C 50 0 SHEET 2 E 2 GLU C 63 SER C 70 -1 N SER C 70 O VAL C 43 SHEET 1 F 2 LEU C 112 LEU C 115 0 SHEET 2 F 2 TYR C 121 LEU C 124 -1 N LEU C 124 O LEU C 112 SHEET 1 G 2 VAL D 43 ASN D 50 0 SHEET 2 G 2 GLU D 63 SER D 70 -1 N SER D 70 O VAL D 43 SHEET 1 H 2 LEU D 112 LEU D 115 0 SHEET 2 H 2 TYR D 121 LEU D 124 -1 N LEU D 124 O LEU D 112 SHEET 1 I 2 CYS A 102 ALA A 107 0 SHEET 2 I 2 ARG A 131 ILE A 135 -1 N ILE A 135 O CYS A 102 SHEET 1 J 2 CYS B 102 ALA B 107 0 SHEET 2 J 2 ARG B 131 ILE B 135 -1 N ILE B 135 O CYS B 102 SHEET 1 K 2 CYS C 102 ALA C 107 0 SHEET 2 K 2 ARG C 131 ILE C 135 -1 N ILE C 135 O CYS C 102 SHEET 1 L 2 CYS D 103 ALA D 107 0 SHEET 2 L 2 ARG D 131 CYS D 134 -1 N GLY D 133 O ARG D 104 SSBOND 1 CYS A 42 CYS A 103 1555 1555 2.02 SSBOND 2 CYS A 69 CYS A 132 1555 1555 2.04 SSBOND 3 CYS A 73 CYS A 134 1555 1555 2.03 SSBOND 4 CYS A 102 CYS B 102 1555 1555 1.99 SSBOND 5 CYS B 42 CYS B 103 1555 1555 2.03 SSBOND 6 CYS B 69 CYS B 132 1555 1555 2.04 SSBOND 7 CYS B 73 CYS B 134 1555 1555 2.02 SSBOND 8 CYS C 42 CYS C 103 1555 1555 2.03 SSBOND 9 CYS C 69 CYS C 132 1555 1555 2.04 SSBOND 10 CYS C 73 CYS C 134 1555 1555 2.02 SSBOND 11 CYS C 102 CYS D 102 1555 1555 2.04 SSBOND 12 CYS D 42 CYS D 103 1555 1555 2.02 SSBOND 13 CYS D 69 CYS D 132 1555 1555 2.03 SSBOND 14 CYS D 73 CYS D 134 1555 1555 2.03 CRYST1 67.850 67.550 71.400 90.00 115.94 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014738 0.000000 0.007169 0.00000 SCALE2 0.000000 0.014804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015575 0.00000 MTRIX1 1 0.131915 0.517078 -0.845712 24.84780 1 MTRIX2 1 0.528292 -0.758579 -0.381400 38.88020 1 MTRIX3 1 -0.838753 -0.396470 -0.373237 58.13580 1 MTRIX1 2 0.559989 0.039033 0.827580 3.89620 1 MTRIX2 2 0.087061 -0.996132 -0.011928 15.99100 1 MTRIX3 2 0.823913 0.078730 -0.561221 2.57190 1 MTRIX1 3 -0.756660 -0.611477 0.231434 38.83200 1 MTRIX2 3 -0.215165 0.567151 0.795012 29.26620 1 MTRIX3 3 -0.617389 0.551757 -0.560709 44.48680 1