HEADER FLAVOENZYME 10-APR-97 1AHZ TITLE STRUCTURE OF THE OCTAMERIC FLAVOENZYME VANILLYL-ALCOHOL OXIDASE IN TITLE 2 COMPLEX WITH 4-(1-HEPTENYL)PHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: VANILLYL-ALCOHOL OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.3.13; COMPND 5 OTHER_DETAILS: COVALENT BOND BETWEEN FAD AND HIS 422 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM SIMPLICISSIMUM; SOURCE 3 ORGANISM_TAXID: 69488; SOURCE 4 ATCC: 90172; SOURCE 5 ORGANELLE: PEROXISOMES; SOURCE 6 CELLULAR_LOCATION: INTRACELLULAR; SOURCE 7 OTHER_DETAILS: FUNGUS KEYWDS FLAVOENZYME, OXIDASE, CATALYSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.MATTEVI REVDAT 5 05-JUN-24 1AHZ 1 REMARK LINK REVDAT 4 13-JUL-11 1AHZ 1 VERSN REVDAT 3 24-FEB-09 1AHZ 1 VERSN REVDAT 2 01-APR-03 1AHZ 1 JRNL REVDAT 1 15-OCT-97 1AHZ 0 JRNL AUTH A.MATTEVI,M.W.FRAAIJE,A.MOZZARELLI,L.OLIVI,A.CODA, JRNL AUTH 2 W.J.VAN BERKEL JRNL TITL CRYSTAL STRUCTURES AND INHIBITOR BINDING IN THE OCTAMERIC JRNL TITL 2 FLAVOENZYME VANILLYL-ALCOHOL OXIDASE: THE SHAPE OF THE JRNL TITL 3 ACTIVE-SITE CAVITY CONTROLS SUBSTRATE SPECIFICITY. JRNL REF STRUCTURE V. 5 907 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9261083 JRNL DOI 10.1016/S0969-2126(97)00245-1 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 17633 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2250 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2240 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 8.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1000 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 17633 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 24.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.010 ; 30.000; 9152 REMARK 3 BOND ANGLES (DEGREES) : 2.500 ; 15.000; 12384 REMARK 3 TORSION ANGLES (DEGREES) : 18.200; 180.00; 5296 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.008 ; 100.00; 215 REMARK 3 GENERAL PLANES (A) : 0.006 ; 250.00; 1311 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 8.400 ; 65.000; 9148 REMARK 3 NON-BONDED CONTACTS (A) : 0.039 ; 125.00; 331 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BABINET REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-96 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17633 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : 0.33900 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DENSITY AVERAGING AND REMARK 200 LEAST SQUARES REFINEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BINDING STUDIES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: FROM 6% PEG4000, 100 MM ACETATE BUFFER REMARK 280 PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 70.48500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.48500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.72500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 70.48500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.48500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.72500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 70.48500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 70.48500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.72500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 70.48500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 70.48500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.72500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 140.97000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 140.97000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 140.97000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 140.97000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 GLN A 5 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 THR B 4 REMARK 465 GLN B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 ARG A 274 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 ARG B 274 CB CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 29 CG1 CG2 CD1 REMARK 480 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 43 CD CE NZ REMARK 480 HIS A 149 CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 221 CG CD CE NZ REMARK 480 SER A 328 OG REMARK 480 ARG A 350 NH1 NH2 REMARK 480 LYS A 476 CG CD CE NZ REMARK 480 ILE B 29 CG1 CG2 CD1 REMARK 480 ARG B 30 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 43 CD CE NZ REMARK 480 HIS B 149 CG ND1 CD2 CE1 NE2 REMARK 480 LYS B 221 CG CD CE NZ REMARK 480 SER B 328 OG REMARK 480 ARG B 350 NH1 NH2 REMARK 480 LYS B 476 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 503 O4 EPT A 602 2.13 REMARK 500 O GLY A 247 NH2 ARG B 183 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 7 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 LEU A 97 CA - CB - CG ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG A 129 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 187 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 211 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 PHE A 375 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 PRO A 386 C - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 HIS A 422 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 THR A 457 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 ARG A 463 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 PHE B 7 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 LEU B 97 CA - CB - CG ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG B 129 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 ARG B 183 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR B 187 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG B 211 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 PHE B 375 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 PRO B 386 C - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 HIS B 422 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 THR B 457 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 ARG B 463 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 38 114.96 -165.89 REMARK 500 ILE A 46 27.11 -72.15 REMARK 500 HIS A 58 -171.30 -173.16 REMARK 500 HIS A 62 110.78 -36.81 REMARK 500 ASN A 105 31.40 -65.39 REMARK 500 TYR A 108 17.71 -148.44 REMARK 500 PRO A 169 -166.85 -76.96 REMARK 500 ASP A 170 -82.33 -70.94 REMARK 500 ARG A 183 42.18 71.32 REMARK 500 THR A 188 -167.47 -78.21 REMARK 500 SER A 198 115.11 -166.90 REMARK 500 TYR A 276 145.31 -172.59 REMARK 500 GLN A 277 119.49 -169.23 REMARK 500 SER A 326 16.41 -63.60 REMARK 500 TYR A 327 -27.07 -143.10 REMARK 500 ASP A 388 21.08 -61.10 REMARK 500 GLU A 391 25.95 -65.38 REMARK 500 SER A 393 144.01 -37.15 REMARK 500 GLN A 403 17.60 -141.85 REMARK 500 TYR A 408 10.57 -154.79 REMARK 500 PRO A 418 -81.55 -64.54 REMARK 500 LYS A 475 11.19 -60.13 REMARK 500 ALA A 497 6.99 -59.21 REMARK 500 ASN A 498 27.86 -140.40 REMARK 500 ALA A 508 1.83 -64.65 REMARK 500 PHE A 509 11.56 -141.94 REMARK 500 TYR A 517 22.04 -74.62 REMARK 500 ASN A 518 23.05 -71.99 REMARK 500 ASN A 521 40.61 71.15 REMARK 500 ALA A 542 46.24 31.93 REMARK 500 LYS A 559 170.39 -48.37 REMARK 500 GLU B 38 114.94 -165.87 REMARK 500 ILE B 46 27.17 -72.14 REMARK 500 HIS B 58 -171.38 -173.20 REMARK 500 HIS B 62 110.82 -36.87 REMARK 500 ASN B 105 31.38 -65.43 REMARK 500 TYR B 108 17.69 -148.47 REMARK 500 PRO B 169 -166.82 -77.03 REMARK 500 ASP B 170 -82.44 -70.95 REMARK 500 ARG B 183 42.13 71.32 REMARK 500 THR B 188 -167.47 -78.24 REMARK 500 SER B 198 115.15 -166.95 REMARK 500 TYR B 276 145.29 -172.59 REMARK 500 GLN B 277 119.47 -169.21 REMARK 500 SER B 326 16.41 -63.56 REMARK 500 TYR B 327 -27.16 -143.09 REMARK 500 ASP B 388 21.01 -61.08 REMARK 500 GLU B 391 25.91 -65.44 REMARK 500 SER B 393 143.98 -37.16 REMARK 500 GLN B 403 17.59 -141.83 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: FAD REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: COFACTOR. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPT A 602 DBREF 1AHZ A 1 560 UNP P56216 VAOX_PENSI 1 560 DBREF 1AHZ B 1 560 UNP P56216 VAOX_PENSI 1 560 SEQRES 1 A 560 MET SER LYS THR GLN GLU PHE ARG PRO LEU THR LEU PRO SEQRES 2 A 560 PRO LYS LEU SER LEU SER ASP PHE ASN GLU PHE ILE GLN SEQRES 3 A 560 ASP ILE ILE ARG ILE VAL GLY SER GLU ASN VAL GLU VAL SEQRES 4 A 560 ILE SER SER LYS ASP GLN ILE VAL ASP GLY SER TYR MET SEQRES 5 A 560 LYS PRO THR HIS THR HIS ASP PRO HIS HIS VAL MET ASP SEQRES 6 A 560 GLN ASP TYR PHE LEU ALA SER ALA ILE VAL ALA PRO ARG SEQRES 7 A 560 ASN VAL ALA ASP VAL GLN SER ILE VAL GLY LEU ALA ASN SEQRES 8 A 560 LYS PHE SER PHE PRO LEU TRP PRO ILE SER ILE GLY ARG SEQRES 9 A 560 ASN SER GLY TYR GLY GLY ALA ALA PRO ARG VAL SER GLY SEQRES 10 A 560 SER VAL VAL LEU ASP MET GLY LYS ASN MET ASN ARG VAL SEQRES 11 A 560 LEU GLU VAL ASN VAL GLU GLY ALA TYR CYS VAL VAL GLU SEQRES 12 A 560 PRO GLY VAL THR TYR HIS ASP LEU HIS ASN TYR LEU GLU SEQRES 13 A 560 ALA ASN ASN LEU ARG ASP LYS LEU TRP LEU ASP VAL PRO SEQRES 14 A 560 ASP LEU GLY GLY GLY SER VAL LEU GLY ASN ALA VAL GLU SEQRES 15 A 560 ARG GLY VAL GLY TYR THR PRO TYR GLY ASP HIS TRP MET SEQRES 16 A 560 MET HIS SER GLY MET GLU VAL VAL LEU ALA ASN GLY GLU SEQRES 17 A 560 LEU LEU ARG THR GLY MET GLY ALA LEU PRO ASP PRO LYS SEQRES 18 A 560 ARG PRO GLU THR MET GLY LEU LYS PRO GLU ASP GLN PRO SEQRES 19 A 560 TRP SER LYS ILE ALA HIS LEU PHE PRO TYR GLY PHE GLY SEQRES 20 A 560 PRO TYR ILE ASP GLY LEU PHE SER GLN SER ASN MET GLY SEQRES 21 A 560 ILE VAL THR LYS ILE GLY ILE TRP LEU MET PRO ASN PRO SEQRES 22 A 560 ARG GLY TYR GLN SER TYR LEU ILE THR LEU PRO LYS ASP SEQRES 23 A 560 GLY ASP LEU LYS GLN ALA VAL ASP ILE ILE ARG PRO LEU SEQRES 24 A 560 ARG LEU GLY MET ALA LEU GLN ASN VAL PRO THR ILE ARG SEQRES 25 A 560 HIS ILE LEU LEU ASP ALA ALA VAL LEU GLY ASP LYS ARG SEQRES 26 A 560 SER TYR SER SER ARG THR GLU PRO LEU SER ASP GLU GLU SEQRES 27 A 560 LEU ASP LYS ILE ALA LYS GLN LEU ASN LEU GLY ARG TRP SEQRES 28 A 560 ASN PHE TYR GLY ALA LEU TYR GLY PRO GLU PRO ILE ARG SEQRES 29 A 560 ARG VAL LEU TRP GLU THR ILE LYS ASP ALA PHE SER ALA SEQRES 30 A 560 ILE PRO GLY VAL LYS PHE TYR PHE PRO GLU ASP THR PRO SEQRES 31 A 560 GLU ASN SER VAL LEU ARG VAL ARG ASP LYS THR MET GLN SEQRES 32 A 560 GLY ILE PRO THR TYR ASP GLU LEU LYS TRP ILE ASP TRP SEQRES 33 A 560 LEU PRO ASN GLY ALA HIS LEU PHE PHE SER PRO ILE ALA SEQRES 34 A 560 LYS VAL SER GLY GLU ASP ALA MET MET GLN TYR ALA VAL SEQRES 35 A 560 THR LYS LYS ARG CYS GLN GLU ALA GLY LEU ASP PHE ILE SEQRES 36 A 560 GLY THR PHE THR VAL GLY MET ARG GLU MET HIS HIS ILE SEQRES 37 A 560 VAL CYS ILE VAL PHE ASN LYS LYS ASP LEU ILE GLN LYS SEQRES 38 A 560 ARG LYS VAL GLN TRP LEU MET ARG THR LEU ILE ASP ASP SEQRES 39 A 560 CYS ALA ALA ASN GLY TRP GLY GLU TYR ARG THR HIS LEU SEQRES 40 A 560 ALA PHE MET ASP GLN ILE MET GLU THR TYR ASN TRP ASN SEQRES 41 A 560 ASN SER SER PHE LEU ARG PHE ASN GLU VAL LEU LYS ASN SEQRES 42 A 560 ALA VAL ASP PRO ASN GLY ILE ILE ALA PRO GLY LYS SER SEQRES 43 A 560 GLY VAL TRP PRO SER GLN TYR SER HIS VAL THR TRP LYS SEQRES 44 A 560 LEU SEQRES 1 B 560 MET SER LYS THR GLN GLU PHE ARG PRO LEU THR LEU PRO SEQRES 2 B 560 PRO LYS LEU SER LEU SER ASP PHE ASN GLU PHE ILE GLN SEQRES 3 B 560 ASP ILE ILE ARG ILE VAL GLY SER GLU ASN VAL GLU VAL SEQRES 4 B 560 ILE SER SER LYS ASP GLN ILE VAL ASP GLY SER TYR MET SEQRES 5 B 560 LYS PRO THR HIS THR HIS ASP PRO HIS HIS VAL MET ASP SEQRES 6 B 560 GLN ASP TYR PHE LEU ALA SER ALA ILE VAL ALA PRO ARG SEQRES 7 B 560 ASN VAL ALA ASP VAL GLN SER ILE VAL GLY LEU ALA ASN SEQRES 8 B 560 LYS PHE SER PHE PRO LEU TRP PRO ILE SER ILE GLY ARG SEQRES 9 B 560 ASN SER GLY TYR GLY GLY ALA ALA PRO ARG VAL SER GLY SEQRES 10 B 560 SER VAL VAL LEU ASP MET GLY LYS ASN MET ASN ARG VAL SEQRES 11 B 560 LEU GLU VAL ASN VAL GLU GLY ALA TYR CYS VAL VAL GLU SEQRES 12 B 560 PRO GLY VAL THR TYR HIS ASP LEU HIS ASN TYR LEU GLU SEQRES 13 B 560 ALA ASN ASN LEU ARG ASP LYS LEU TRP LEU ASP VAL PRO SEQRES 14 B 560 ASP LEU GLY GLY GLY SER VAL LEU GLY ASN ALA VAL GLU SEQRES 15 B 560 ARG GLY VAL GLY TYR THR PRO TYR GLY ASP HIS TRP MET SEQRES 16 B 560 MET HIS SER GLY MET GLU VAL VAL LEU ALA ASN GLY GLU SEQRES 17 B 560 LEU LEU ARG THR GLY MET GLY ALA LEU PRO ASP PRO LYS SEQRES 18 B 560 ARG PRO GLU THR MET GLY LEU LYS PRO GLU ASP GLN PRO SEQRES 19 B 560 TRP SER LYS ILE ALA HIS LEU PHE PRO TYR GLY PHE GLY SEQRES 20 B 560 PRO TYR ILE ASP GLY LEU PHE SER GLN SER ASN MET GLY SEQRES 21 B 560 ILE VAL THR LYS ILE GLY ILE TRP LEU MET PRO ASN PRO SEQRES 22 B 560 ARG GLY TYR GLN SER TYR LEU ILE THR LEU PRO LYS ASP SEQRES 23 B 560 GLY ASP LEU LYS GLN ALA VAL ASP ILE ILE ARG PRO LEU SEQRES 24 B 560 ARG LEU GLY MET ALA LEU GLN ASN VAL PRO THR ILE ARG SEQRES 25 B 560 HIS ILE LEU LEU ASP ALA ALA VAL LEU GLY ASP LYS ARG SEQRES 26 B 560 SER TYR SER SER ARG THR GLU PRO LEU SER ASP GLU GLU SEQRES 27 B 560 LEU ASP LYS ILE ALA LYS GLN LEU ASN LEU GLY ARG TRP SEQRES 28 B 560 ASN PHE TYR GLY ALA LEU TYR GLY PRO GLU PRO ILE ARG SEQRES 29 B 560 ARG VAL LEU TRP GLU THR ILE LYS ASP ALA PHE SER ALA SEQRES 30 B 560 ILE PRO GLY VAL LYS PHE TYR PHE PRO GLU ASP THR PRO SEQRES 31 B 560 GLU ASN SER VAL LEU ARG VAL ARG ASP LYS THR MET GLN SEQRES 32 B 560 GLY ILE PRO THR TYR ASP GLU LEU LYS TRP ILE ASP TRP SEQRES 33 B 560 LEU PRO ASN GLY ALA HIS LEU PHE PHE SER PRO ILE ALA SEQRES 34 B 560 LYS VAL SER GLY GLU ASP ALA MET MET GLN TYR ALA VAL SEQRES 35 B 560 THR LYS LYS ARG CYS GLN GLU ALA GLY LEU ASP PHE ILE SEQRES 36 B 560 GLY THR PHE THR VAL GLY MET ARG GLU MET HIS HIS ILE SEQRES 37 B 560 VAL CYS ILE VAL PHE ASN LYS LYS ASP LEU ILE GLN LYS SEQRES 38 B 560 ARG LYS VAL GLN TRP LEU MET ARG THR LEU ILE ASP ASP SEQRES 39 B 560 CYS ALA ALA ASN GLY TRP GLY GLU TYR ARG THR HIS LEU SEQRES 40 B 560 ALA PHE MET ASP GLN ILE MET GLU THR TYR ASN TRP ASN SEQRES 41 B 560 ASN SER SER PHE LEU ARG PHE ASN GLU VAL LEU LYS ASN SEQRES 42 B 560 ALA VAL ASP PRO ASN GLY ILE ILE ALA PRO GLY LYS SER SEQRES 43 B 560 GLY VAL TRP PRO SER GLN TYR SER HIS VAL THR TRP LYS SEQRES 44 B 560 LEU HET CL A 601 1 HET FAD A 600 53 HET EPT A 602 14 HET CL B 601 1 HET FAD B 600 53 HETNAM CL CHLORIDE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EPT HEPTANYL-P-PHENOL FORMUL 3 CL 2(CL 1-) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 EPT C13 H20 O HELIX 1 1 LEU A 18 VAL A 32 1 15 HELIX 2 2 LYS A 43 GLN A 45 5 3 HELIX 3 3 VAL A 80 PHE A 93 1 14 HELIX 4 4 TYR A 148 ALA A 157 1 10 HELIX 5 5 LEU A 160 ASP A 162 5 3 HELIX 6 6 VAL A 176 GLU A 182 1 7 HELIX 7 7 GLY A 213 ALA A 216 5 4 HELIX 8 8 PRO A 223 THR A 225 5 3 HELIX 9 9 PRO A 230 ASP A 232 5 3 HELIX 10 10 ILE A 250 PHE A 254 5 5 HELIX 11 11 GLY A 287 LEU A 301 5 15 HELIX 12 12 ILE A 314 LEU A 321 1 8 HELIX 13 13 ASP A 336 LEU A 346 1 11 HELIX 14 14 GLU A 361 ALA A 377 1 17 HELIX 15 15 VAL A 394 GLN A 403 1 10 HELIX 16 16 ASP A 409 ASP A 415 5 7 HELIX 17 17 GLY A 433 GLU A 449 1 17 HELIX 18 18 LEU A 478 ASN A 498 1 21 HELIX 19 19 LEU A 507 TYR A 517 5 11 HELIX 20 20 TRP A 519 VAL A 535 1 17 HELIX 21 21 LYS A 545 GLY A 547 5 3 HELIX 22 22 HIS A 555 TRP A 558 1 4 HELIX 23 23 LEU B 18 VAL B 32 1 15 HELIX 24 24 LYS B 43 GLN B 45 5 3 HELIX 25 25 VAL B 80 PHE B 93 1 14 HELIX 26 26 TYR B 148 ALA B 157 1 10 HELIX 27 27 LEU B 160 ASP B 162 5 3 HELIX 28 28 VAL B 176 GLU B 182 1 7 HELIX 29 29 GLY B 213 ALA B 216 5 4 HELIX 30 30 PRO B 223 THR B 225 5 3 HELIX 31 31 PRO B 230 ASP B 232 5 3 HELIX 32 32 ILE B 250 PHE B 254 5 5 HELIX 33 33 GLY B 287 LEU B 301 5 15 HELIX 34 34 ILE B 314 LEU B 321 1 8 HELIX 35 35 ASP B 336 LEU B 346 1 11 HELIX 36 36 GLU B 361 ALA B 377 1 17 HELIX 37 37 VAL B 394 GLN B 403 1 10 HELIX 38 38 ASP B 409 ASP B 415 5 7 HELIX 39 39 GLY B 433 GLU B 449 1 17 HELIX 40 40 LEU B 478 ASN B 498 1 21 HELIX 41 41 LEU B 507 TYR B 517 5 11 HELIX 42 42 TRP B 519 VAL B 535 1 17 HELIX 43 43 LYS B 545 GLY B 547 5 3 HELIX 44 44 HIS B 555 TRP B 558 1 4 SHEET 1 A 4 VAL A 37 VAL A 39 0 SHEET 2 A 4 ALA A 73 VAL A 75 -1 N ILE A 74 O GLU A 38 SHEET 3 A 4 VAL A 119 ASP A 122 1 N VAL A 120 O ALA A 73 SHEET 4 A 4 LEU A 97 ILE A 100 1 N TRP A 98 O VAL A 119 SHEET 1 B 5 VAL A 130 ASN A 134 0 SHEET 2 B 5 TYR A 139 GLU A 143 -1 N VAL A 141 O LEU A 131 SHEET 3 B 5 ILE A 261 TRP A 268 -1 N ILE A 267 O CYS A 140 SHEET 4 B 5 MET A 200 VAL A 203 -1 N VAL A 203 O ILE A 261 SHEET 5 B 5 LEU A 209 ARG A 211 -1 N LEU A 210 O VAL A 202 SHEET 1 C 7 LYS A 382 TYR A 384 0 SHEET 2 C 7 TYR A 276 LEU A 283 -1 N THR A 282 O LYS A 382 SHEET 3 C 7 TRP A 351 TYR A 358 -1 N LEU A 357 O GLN A 277 SHEET 4 C 7 THR A 310 HIS A 313 -1 N ARG A 312 O ASN A 352 SHEET 5 C 7 GLY A 456 VAL A 460 -1 N PHE A 458 O ILE A 311 SHEET 6 C 7 GLU A 464 CYS A 470 -1 N ILE A 468 O THR A 457 SHEET 7 C 7 PHE A 424 LYS A 430 -1 N ALA A 429 O MET A 465 SHEET 1 D 4 VAL B 37 VAL B 39 0 SHEET 2 D 4 ALA B 73 VAL B 75 -1 N ILE B 74 O GLU B 38 SHEET 3 D 4 VAL B 119 ASP B 122 1 N VAL B 120 O ALA B 73 SHEET 4 D 4 LEU B 97 ILE B 100 1 N TRP B 98 O VAL B 119 SHEET 1 E 5 VAL B 130 ASN B 134 0 SHEET 2 E 5 TYR B 139 GLU B 143 -1 N VAL B 141 O LEU B 131 SHEET 3 E 5 ILE B 261 TRP B 268 -1 N ILE B 267 O CYS B 140 SHEET 4 E 5 MET B 200 VAL B 203 -1 N VAL B 203 O ILE B 261 SHEET 5 E 5 LEU B 209 ARG B 211 -1 N LEU B 210 O VAL B 202 SHEET 1 F 7 LYS B 382 TYR B 384 0 SHEET 2 F 7 TYR B 276 LEU B 283 -1 N THR B 282 O LYS B 382 SHEET 3 F 7 TRP B 351 TYR B 358 -1 N LEU B 357 O GLN B 277 SHEET 4 F 7 THR B 310 HIS B 313 -1 N ARG B 312 O ASN B 352 SHEET 5 F 7 GLY B 456 VAL B 460 -1 N PHE B 458 O ILE B 311 SHEET 6 F 7 GLU B 464 CYS B 470 -1 N ILE B 468 O THR B 457 SHEET 7 F 7 PHE B 424 LYS B 430 -1 N ALA B 429 O MET B 465 LINK NE2 HIS A 422 C8M FAD A 600 1555 1555 1.36 LINK CE1 HIS A 422 C8M FAD A 600 1555 1555 2.03 LINK NE2 HIS B 422 C8M FAD B 600 1555 1555 1.36 LINK CE1 HIS B 422 C8M FAD B 600 1555 1555 2.03 SITE 1 FAD 2 FAD A 600 FAD B 600 SITE 1 AC1 2 LEU A 171 FAD A 600 SITE 1 AC2 2 LEU B 171 FAD B 600 SITE 1 AC3 25 PRO A 99 SER A 101 ILE A 102 GLY A 103 SITE 2 AC3 25 ARG A 104 ASN A 105 PRO A 169 ASP A 170 SITE 3 AC3 25 LEU A 171 SER A 175 ASN A 179 GLU A 182 SITE 4 AC3 25 GLY A 184 VAL A 185 TYR A 187 GLY A 260 SITE 5 AC3 25 ILE A 261 VAL A 262 TRP A 413 HIS A 422 SITE 6 AC3 25 PHE A 424 ARG A 504 LYS A 545 CL A 601 SITE 7 AC3 25 EPT A 602 SITE 1 AC4 24 PRO B 99 SER B 101 ILE B 102 GLY B 103 SITE 2 AC4 24 ARG B 104 ASN B 105 PRO B 169 ASP B 170 SITE 3 AC4 24 LEU B 171 SER B 175 ASN B 179 GLU B 182 SITE 4 AC4 24 GLY B 184 VAL B 185 TYR B 187 GLY B 260 SITE 5 AC4 24 ILE B 261 VAL B 262 TRP B 413 HIS B 422 SITE 6 AC4 24 PHE B 424 ARG B 504 LYS B 545 CL B 601 SITE 1 AC5 12 TYR A 108 ASP A 170 TYR A 187 ARG A 312 SITE 2 AC5 12 ARG A 398 GLU A 410 PHE A 424 THR A 457 SITE 3 AC5 12 ILE A 468 TYR A 503 ARG A 504 FAD A 600 CRYST1 140.970 140.970 133.450 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007094 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007493 0.00000 MTRIX1 1 0.306020 -0.950980 0.044650 113.27222 1 MTRIX2 1 -0.951240 -0.307330 -0.026240 160.32828 1 MTRIX3 1 0.038680 -0.034450 -0.998660 108.80533 1