HEADER TRANSFERASE(AMINOTRANSFERASE) 10-MAY-94 1AIC TITLE STRUCTURAL BASIS FOR THE CATALYTIC ACTIVITY OF ASPARTATE TITLE 2 AMINOTRANSFERASE K258H LACKING THE PYRIDOXAL-5'-PHOSPHATE BINDING TITLE 3 LYSINE RESIDUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE(AMINOTRANSFERASE) EXPDTA X-RAY DIFFRACTION AUTHOR J.JAEGER,J.N.JANSONIUS REVDAT 4 07-FEB-24 1AIC 1 REMARK SEQADV REVDAT 3 25-JUL-12 1AIC 1 COMPND SEQADV VERSN REVDAT 2 24-FEB-09 1AIC 1 VERSN REVDAT 1 15-OCT-94 1AIC 0 JRNL AUTH V.N.MALASHKEVICH,J.JAGER,M.ZIAK,U.SAUDER,H.GEHRING, JRNL AUTH 2 P.CHRISTEN,J.N.JANSONIUS JRNL TITL STRUCTURAL BASIS FOR THE CATALYTIC ACTIVITY OF ASPARTATE JRNL TITL 2 AMINOTRANSFERASE K258H LACKING THE PYRIDOXAL JRNL TITL 3 5'-PHOSPHATE-BINDING LYSINE RESIDUE. JRNL REF BIOCHEMISTRY V. 34 405 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7819232 JRNL DOI 10.1021/BI00002A004 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 39276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 3.120 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AIC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.95000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A DIMER OF ASPARTATE REMARK 300 AMINOTRANSFERASE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 189 NE2 HIS A 189 CD2 -0.081 REMARK 500 HIS A 258 NE2 HIS A 258 CD2 -0.068 REMARK 500 HIS A 301 NE2 HIS A 301 CD2 -0.069 REMARK 500 ASP B 15 N ASP B 15 CA 0.431 REMARK 500 ASP B 15 C PRO B 16 N -0.197 REMARK 500 ILE B 17 CB ILE B 17 CG1 -0.426 REMARK 500 GLY B 19 N GLY B 19 CA 0.445 REMARK 500 HIS B 143 NE2 HIS B 143 CD2 -0.068 REMARK 500 HIS B 189 NE2 HIS B 189 CD2 -0.067 REMARK 500 HIS B 247 NE2 HIS B 247 CD2 -0.072 REMARK 500 HIS B 258 NE2 HIS B 258 CD2 -0.070 REMARK 500 HIS B 301 NE2 HIS B 301 CD2 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 8 CB - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 ASN A 8 N - CA - CB ANGL. DEV. = -17.9 DEGREES REMARK 500 ALA A 11 N - CA - C ANGL. DEV. = 19.7 DEGREES REMARK 500 GLU A 28 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LYS A 41 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 LYS A 41 CB - CG - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 TYR A 59 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 81 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU A 112 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 129 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TRP A 140 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP A 140 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP A 169 CA - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 ASN A 178 CA - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 TRP A 205 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 205 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 217 CD1 - CG - CD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 TRP A 217 CG - CD1 - NE1 ANGL. DEV. = -6.8 DEGREES REMARK 500 TRP A 217 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 225 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 230 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 GLY A 231 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 GLU A 238 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU A 250 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 266 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 266 NE - CZ - NH2 ANGL. DEV. = -11.2 DEGREES REMARK 500 LEU A 272 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 VAL A 280 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 VAL A 280 CA - CB - CG1 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG A 316 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP A 319 CD1 - CG - CD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 TRP A 319 CG - CD1 - NE1 ANGL. DEV. = -7.7 DEGREES REMARK 500 TRP A 319 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP A 319 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 GLN A 328 CA - CB - CG ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG A 329 CG - CD - NE ANGL. DEV. = -16.5 DEGREES REMARK 500 ARG A 329 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 329 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 334 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ALA A 346 CA - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG A 348 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LYS A 355 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 THR A 366 CA - CB - OG1 ANGL. DEV. = -12.7 DEGREES REMARK 500 THR A 366 CA - CB - CG2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 372 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 374 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 91 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 -33.44 -32.81 REMARK 500 ALA A 12 121.74 68.90 REMARK 500 GLU A 28 53.30 30.21 REMARK 500 PRO A 30 -116.09 -39.74 REMARK 500 TYR A 70 151.64 -43.53 REMARK 500 PRO A 106 80.62 -67.81 REMARK 500 LYS A 126 -5.33 -160.78 REMARK 500 TYR A 160 -54.05 -153.76 REMARK 500 HIS A 166 60.64 62.42 REMARK 500 GLU A 179 -91.14 71.52 REMARK 500 ALA A 180 69.89 29.21 REMARK 500 GLN A 181 143.90 -8.76 REMARK 500 ALA A 229 -74.07 -93.65 REMARK 500 ARG A 266 82.39 53.98 REMARK 500 ASN A 294 -76.12 -114.31 REMARK 500 SER A 296 -52.23 75.65 REMARK 500 ALA A 346 101.96 -55.57 REMARK 500 ASN A 347 -21.98 -31.35 REMARK 500 PHE A 377 -165.47 -119.38 REMARK 500 PHE B 6 -27.27 67.02 REMARK 500 ALA B 26 -34.45 -176.43 REMARK 500 GLU B 28 63.65 13.87 REMARK 500 PRO B 30 -88.72 -65.99 REMARK 500 PRO B 106 77.90 -64.18 REMARK 500 TYR B 160 -54.00 -153.38 REMARK 500 ARG B 230 -77.62 55.08 REMARK 500 ARG B 266 89.05 61.44 REMARK 500 ASN B 294 -67.56 -109.58 REMARK 500 SER B 296 -57.55 73.13 REMARK 500 PHE B 377 139.67 101.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 376 PHE B 377 148.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 329 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 231 -18.92 REMARK 500 ASP B 15 14.17 REMARK 500 TRP B 134 10.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: ACB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMP A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMP B 411 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE NUMBERING USED IN THIS ENTRY CONFORMS TO THE REMARK 999 AMINO ACID SEQUENCE OF THE CHICKEN CYTOSOLIC ISOENZYME. REMARK 999 HENCE, THE RESIDUE NUMBERING STARTS WITH MET 5 AND RESIDUES REMARK 999 127, 128, 130, 131, 132, 153, 232 AND 406 OF BOTH CHAINS REMARK 999 HAVE NOT BEEN INCLUDED. DBREF 1AIC A 5 409 UNP P00509 AAT_ECOLI 1 396 DBREF 1AIC B 5 409 UNP P00509 AAT_ECOLI 1 396 SEQADV 1AIC HIS A 258 UNP P00509 LYS 246 ENGINEERED MUTATION SEQADV 1AIC HIS B 258 UNP P00509 LYS 246 ENGINEERED MUTATION SEQRES 1 A 396 MET PHE GLU ASN ILE THR ALA ALA PRO ALA ASP PRO ILE SEQRES 2 A 396 LEU GLY LEU ALA ASP LEU PHE ARG ALA ASP GLU ARG PRO SEQRES 3 A 396 GLY LYS ILE ASN LEU GLY ILE GLY VAL TYR LYS ASP GLU SEQRES 4 A 396 THR GLY LYS THR PRO VAL LEU THR SER VAL LYS LYS ALA SEQRES 5 A 396 GLU GLN TYR LEU LEU GLU ASN GLU THR THR LYS ASN TYR SEQRES 6 A 396 LEU GLY ILE ASP GLY ILE PRO GLU PHE GLY ARG CYS THR SEQRES 7 A 396 GLN GLU LEU LEU PHE GLY LYS GLY SER ALA LEU ILE ASN SEQRES 8 A 396 ASP LYS ARG ALA ARG THR ALA GLN THR PRO GLY GLY THR SEQRES 9 A 396 GLY ALA LEU ARG VAL ALA ALA ASP PHE LEU ALA LYS ASN SEQRES 10 A 396 THR SER VAL LYS ARG VAL TRP VAL SER ASN PRO SER TRP SEQRES 11 A 396 PRO ASN HIS LYS SER VAL PHE ASN SER ALA GLY LEU GLU SEQRES 12 A 396 VAL ARG GLU TYR ALA TYR TYR ASP ALA GLU ASN HIS THR SEQRES 13 A 396 LEU ASP PHE ASP ALA LEU ILE ASN SER LEU ASN GLU ALA SEQRES 14 A 396 GLN ALA GLY ASP VAL VAL LEU PHE HIS GLY CYS CYS HIS SEQRES 15 A 396 ASN PRO THR GLY ILE ASP PRO THR LEU GLU GLN TRP GLN SEQRES 16 A 396 THR LEU ALA GLN LEU SER VAL GLU LYS GLY TRP LEU PRO SEQRES 17 A 396 LEU PHE ASP PHE ALA TYR GLN GLY PHE ALA ARG GLY LEU SEQRES 18 A 396 GLU GLU ASP ALA GLU GLY LEU ARG ALA PHE ALA ALA MET SEQRES 19 A 396 HIS LYS GLU LEU ILE VAL ALA SER SER TYR SER HIS ASN SEQRES 20 A 396 PHE GLY LEU TYR ASN GLU ARG VAL GLY ALA CYS THR LEU SEQRES 21 A 396 VAL ALA ALA ASP SER GLU THR VAL ASP ARG ALA PHE SER SEQRES 22 A 396 GLN MET LYS ALA ALA ILE ARG ALA ASN TYR SER ASN PRO SEQRES 23 A 396 PRO ALA HIS GLY ALA SER VAL VAL ALA THR ILE LEU SER SEQRES 24 A 396 ASN ASP ALA LEU ARG ALA ILE TRP GLU GLN GLU LEU THR SEQRES 25 A 396 ASP MET ARG GLN ARG ILE GLN ARG MET ARG GLN LEU PHE SEQRES 26 A 396 VAL ASN THR LEU GLN GLU LYS GLY ALA ASN ARG ASP PHE SEQRES 27 A 396 SER PHE ILE ILE LYS GLN ASN GLY MET PHE SER PHE SER SEQRES 28 A 396 GLY LEU THR LYS GLU GLN VAL LEU ARG LEU ARG GLU GLU SEQRES 29 A 396 PHE GLY VAL TYR ALA VAL ALA SER GLY ARG VAL ASN VAL SEQRES 30 A 396 ALA GLY MET THR PRO ASP ASN MET ALA PRO LEU CYS GLU SEQRES 31 A 396 ALA ILE VAL ALA VAL LEU SEQRES 1 B 396 MET PHE GLU ASN ILE THR ALA ALA PRO ALA ASP PRO ILE SEQRES 2 B 396 LEU GLY LEU ALA ASP LEU PHE ARG ALA ASP GLU ARG PRO SEQRES 3 B 396 GLY LYS ILE ASN LEU GLY ILE GLY VAL TYR LYS ASP GLU SEQRES 4 B 396 THR GLY LYS THR PRO VAL LEU THR SER VAL LYS LYS ALA SEQRES 5 B 396 GLU GLN TYR LEU LEU GLU ASN GLU THR THR LYS ASN TYR SEQRES 6 B 396 LEU GLY ILE ASP GLY ILE PRO GLU PHE GLY ARG CYS THR SEQRES 7 B 396 GLN GLU LEU LEU PHE GLY LYS GLY SER ALA LEU ILE ASN SEQRES 8 B 396 ASP LYS ARG ALA ARG THR ALA GLN THR PRO GLY GLY THR SEQRES 9 B 396 GLY ALA LEU ARG VAL ALA ALA ASP PHE LEU ALA LYS ASN SEQRES 10 B 396 THR SER VAL LYS ARG VAL TRP VAL SER ASN PRO SER TRP SEQRES 11 B 396 PRO ASN HIS LYS SER VAL PHE ASN SER ALA GLY LEU GLU SEQRES 12 B 396 VAL ARG GLU TYR ALA TYR TYR ASP ALA GLU ASN HIS THR SEQRES 13 B 396 LEU ASP PHE ASP ALA LEU ILE ASN SER LEU ASN GLU ALA SEQRES 14 B 396 GLN ALA GLY ASP VAL VAL LEU PHE HIS GLY CYS CYS HIS SEQRES 15 B 396 ASN PRO THR GLY ILE ASP PRO THR LEU GLU GLN TRP GLN SEQRES 16 B 396 THR LEU ALA GLN LEU SER VAL GLU LYS GLY TRP LEU PRO SEQRES 17 B 396 LEU PHE ASP PHE ALA TYR GLN GLY PHE ALA ARG GLY LEU SEQRES 18 B 396 GLU GLU ASP ALA GLU GLY LEU ARG ALA PHE ALA ALA MET SEQRES 19 B 396 HIS LYS GLU LEU ILE VAL ALA SER SER TYR SER HIS ASN SEQRES 20 B 396 PHE GLY LEU TYR ASN GLU ARG VAL GLY ALA CYS THR LEU SEQRES 21 B 396 VAL ALA ALA ASP SER GLU THR VAL ASP ARG ALA PHE SER SEQRES 22 B 396 GLN MET LYS ALA ALA ILE ARG ALA ASN TYR SER ASN PRO SEQRES 23 B 396 PRO ALA HIS GLY ALA SER VAL VAL ALA THR ILE LEU SER SEQRES 24 B 396 ASN ASP ALA LEU ARG ALA ILE TRP GLU GLN GLU LEU THR SEQRES 25 B 396 ASP MET ARG GLN ARG ILE GLN ARG MET ARG GLN LEU PHE SEQRES 26 B 396 VAL ASN THR LEU GLN GLU LYS GLY ALA ASN ARG ASP PHE SEQRES 27 B 396 SER PHE ILE ILE LYS GLN ASN GLY MET PHE SER PHE SER SEQRES 28 B 396 GLY LEU THR LYS GLU GLN VAL LEU ARG LEU ARG GLU GLU SEQRES 29 B 396 PHE GLY VAL TYR ALA VAL ALA SER GLY ARG VAL ASN VAL SEQRES 30 B 396 ALA GLY MET THR PRO ASP ASN MET ALA PRO LEU CYS GLU SEQRES 31 B 396 ALA ILE VAL ALA VAL LEU HET SO4 A 412 5 HET SO4 A 413 5 HET PMP A 411 16 HET PMP B 411 16 HETNAM SO4 SULFATE ION HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 PMP 2(C8 H13 N2 O5 P) HELIX 1 A1 PRO A 16 ALA A 26 1 11 HELIX 2 A2 THR A 51 ASN A 63 1 13 HELIX 3 A3 PRO A 77 PHE A 88 1 12 HELIX 4 A4 ALA A 93 ASP A 97 1 5 HELIX 5 A5 GLY A 107 ASN A 122 1 16 HELIX 6 A6 ASN A 142 ALA A 150 1 9 HELIX 7 A7 PHE A 170 LEU A 177 1 8 HELIX 8 A8 LEU A 202 LYS A 215 1 14 HELIX 9 A9 GLU A 238 MET A 246 1 9 HELIX 10 A11 SER A 277 ASN A 294 1 18 HELIX 11 A12 ALA A 300 SER A 311 1 12 HELIX 12 A13 ASP A 313 GLU A 343 1 31 HELIX 13 A14 SER A 351 LYS A 355 1 5 HELIX 14 A15 LYS A 367 PHE A 377 1 11 HELIX 15 A16 ASP A 395 ALA A 407 1 12 HELIX 16 B1 PRO B 16 ALA B 26 1 11 HELIX 17 B2 THR B 51 ASN B 63 1 13 HELIX 18 B3 PRO B 77 PHE B 88 1 12 HELIX 19 B4 ALA B 93 ASP B 97 1 5 HELIX 20 B5 GLY B 107 ASN B 122 1 16 HELIX 21 B6 ASN B 142 ALA B 150 1 9 HELIX 22 B7 PHE B 170 LEU B 177 1 8 HELIX 23 B8 LEU B 202 LYS B 215 1 14 HELIX 24 B9 GLU B 238 MET B 246 1 9 HELIX 25 B11 SER B 277 ASN B 294 1 18 HELIX 26 B12 ALA B 300 SER B 311 1 12 HELIX 27 B13 ASP B 313 GLU B 343 1 31 HELIX 28 B14 SER B 351 LYS B 355 1 5 HELIX 29 B15 LYS B 367 PHE B 377 1 11 HELIX 30 B16 ASP B 395 ALA B 407 1 12 SHEET 1 S1A 7 ALA A 100 PRO A 106 0 SHEET 2 S1A 7 VAL A 267 VAL A 273 -1 SHEET 3 S1A 7 LEU A 250 SER A 255 -1 SHEET 4 S1A 7 LEU A 218 PHE A 223 1 SHEET 5 S1A 7 VAL A 185 HIS A 189 1 SHEET 6 S1A 7 ARG A 129 ASN A 137 1 SHEET 7 S1A 7 GLU A 154 ALA A 159 1 SHEET 1 S2A 2 ILE A 33 LEU A 35 0 SHEET 2 S2A 2 GLY A 378 TYR A 380 1 SHEET 1 S3A 2 MET A 359 PHE A 362 0 SHEET 2 S3A 2 ARG A 386 VAL A 389 -1 SHEET 1 S1B 7 ALA B 100 PRO B 106 0 SHEET 2 S1B 7 VAL B 267 VAL B 273 -1 SHEET 3 S1B 7 LEU B 250 SER B 255 -1 SHEET 4 S1B 7 LEU B 218 PHE B 223 1 SHEET 5 S1B 7 VAL B 185 HIS B 189 1 SHEET 6 S1B 7 ARG B 129 ASN B 137 1 SHEET 7 S1B 7 GLU B 154 ALA B 159 1 SHEET 1 S2B 2 ILE B 33 LEU B 35 0 SHEET 2 S2B 2 GLY B 378 TYR B 380 1 SHEET 1 S3B 2 MET B 359 PHE B 362 0 SHEET 2 S3B 2 ARG B 386 VAL B 389 -1 CISPEP 1 ASN A 137 PRO A 138 0 -6.02 CISPEP 2 ASN A 194 PRO A 195 0 14.08 CISPEP 3 ASN B 137 PRO B 138 0 -7.54 CISPEP 4 ASN B 194 PRO B 195 0 11.96 SITE 1 ACA 3 HIS A 258 ARG B 292 ARG A 386 SITE 1 ACB 3 HIS B 258 ARG A 292 ARG B 386 SITE 1 AC1 4 ILE A 17 TRP A 140 PMP A 411 ARG B 292 SITE 1 AC2 4 TYR A 70 ARG A 292 TRP B 140 PMP B 411 SITE 1 AC3 12 GLY A 108 THR A 109 TRP A 140 ASN A 194 SITE 2 AC3 12 ASP A 222 ALA A 224 TYR A 225 SER A 255 SITE 3 AC3 12 SER A 257 ARG A 266 SO4 A 412 TYR B 70 SITE 1 AC4 11 TYR A 70 SO4 A 413 GLY B 108 THR B 109 SITE 2 AC4 11 TRP B 140 ASN B 194 ASP B 222 TYR B 225 SITE 3 AC4 11 SER B 255 SER B 257 ARG B 266 CRYST1 87.200 79.900 89.600 90.00 119.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011468 0.000000 0.006383 0.00000 SCALE2 0.000000 0.012516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012773 0.00000 MTRIX1 1 -0.999990 -0.000930 -0.000480 0.11180 1 MTRIX2 1 0.000930 -0.999990 -0.000640 83.71300 1 MTRIX3 1 -0.000480 -0.000640 0.999990 0.01010 1