HEADER DNA 23-APR-97 1AIO TITLE CRYSTAL STRUCTURE OF A DOUBLE-STRANDED DNA CONTAINING THE MAJOR ADDUCT TITLE 2 OF THE ANTICANCER DRUG CISPLATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*CP*(BRU)P*CP*TP*[PT(NH3)2(GP*GP) COMPND 3 ]*TP*CP*TP*CP*C)-3'); COMPND 4 CHAIN: A, C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3'); COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 MOL_ID: 2 KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA EXPDTA X-RAY DIFFRACTION AUTHOR P.M.TAKAHARA,A.C.ROSENZWEIG,C.A.FREDERICK,S.J.LIPPARD REVDAT 8 07-FEB-24 1AIO 1 REMARK LINK REVDAT 7 13-JUL-11 1AIO 1 VERSN REVDAT 6 23-JUN-10 1AIO 1 FORMUL REVDAT 5 24-FEB-09 1AIO 1 VERSN REVDAT 4 01-APR-03 1AIO 1 JRNL REVDAT 3 28-JUN-02 1AIO 1 REMARK REVDAT 2 27-NOV-00 1AIO 5 REVDAT 1 24-APR-97 1AIO 0 SPRSDE 15-MAY-97 1AIO 1GPG JRNL AUTH P.M.TAKAHARA,A.C.ROSENZWEIG,C.A.FREDERICK,S.J.LIPPARD JRNL TITL CRYSTAL STRUCTURE OF DOUBLE-STRANDED DNA CONTAINING THE JRNL TITL 2 MAJOR ADDUCT OF THE ANTICANCER DRUG CISPLATIN. JRNL REF NATURE V. 377 649 1995 JRNL REFN ISSN 0028-0836 JRNL PMID 7566180 JRNL DOI 10.1038/377649A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.M.TAKAHARA,C.A.FREDERICK,S.J.LIPPARD REMARK 1 TITL CRYSTAL STRUCTURE OF THE ANTICANCER DRUG CISPLATIN BOUND TO REMARK 1 TITL 2 DUPLEX DNA REMARK 1 REF J.AM.CHEM.SOC. V. 118 12309 1996 REMARK 1 REFN ISSN 0002-7863 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 5797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 579 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 972 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000170864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-95 REMARK 200 TEMPERATURE (KELVIN) : 277.00 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 54 O HOH A 85 0.00 REMARK 500 O HOH A 55 O HOH A 86 0.00 REMARK 500 O HOH A 58 O HOH A 89 0.00 REMARK 500 O HOH A 60 O HOH A 91 0.00 REMARK 500 O HOH A 62 O HOH A 93 0.00 REMARK 500 O HOH A 66 O HOH A 97 0.00 REMARK 500 O HOH A 68 O HOH A 99 0.00 REMARK 500 O HOH A 80 O HOH A 111 0.00 REMARK 500 O HOH B 51 O HOH B 82 0.00 REMARK 500 O HOH B 52 O HOH B 83 0.00 REMARK 500 O HOH B 53 O HOH B 84 0.00 REMARK 500 O HOH B 56 O HOH B 87 0.00 REMARK 500 O HOH B 59 O HOH B 90 0.00 REMARK 500 O HOH B 61 O HOH B 92 0.00 REMARK 500 O HOH B 63 O HOH B 94 0.00 REMARK 500 O HOH B 69 O HOH B 100 0.00 REMARK 500 O HOH B 76 O HOH B 107 0.00 REMARK 500 O HOH B 79 O HOH B 110 0.00 REMARK 500 O HOH C 67 O HOH C 98 0.00 REMARK 500 O HOH C 72 O HOH C 103 0.00 REMARK 500 O HOH C 73 O HOH C 104 0.00 REMARK 500 O HOH C 75 O HOH C 106 0.00 REMARK 500 O HOH C 78 O HOH C 109 0.00 REMARK 500 O HOH C 81 O HOH C 112 0.00 REMARK 500 O HOH D 57 O HOH D 88 0.00 REMARK 500 O HOH D 64 O HOH D 95 0.00 REMARK 500 O HOH D 65 O HOH D 96 0.00 REMARK 500 O HOH D 70 O HOH D 101 0.00 REMARK 500 O HOH D 71 O HOH D 102 0.00 REMARK 500 O HOH D 74 O HOH D 105 0.00 REMARK 500 O HOH D 77 O HOH D 108 0.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 2 C5' DC A 2 C4' 0.043 REMARK 500 DC A 4 N1 DC A 4 C6 -0.038 REMARK 500 DT A 5 N3 DT A 5 C4 -0.049 REMARK 500 DG A 7 C5' DG A 7 C4' 0.059 REMARK 500 DG A 7 C8 DG A 7 N9 0.051 REMARK 500 DT A 8 C3' DT A 8 C2' -0.061 REMARK 500 DT A 10 N3 DT A 10 C4 -0.049 REMARK 500 DT A 10 C6 DT A 10 N1 -0.045 REMARK 500 DC A 11 P DC A 11 O5' 0.080 REMARK 500 DC A 11 C3' DC A 11 C2' -0.059 REMARK 500 DG B 16 C5' DG B 16 C4' 0.063 REMARK 500 DG B 16 O3' DG B 16 C3' -0.036 REMARK 500 DG B 16 C6 DG B 16 N1 -0.048 REMARK 500 DC B 18 C3' DC B 18 C2' -0.049 REMARK 500 DC B 19 C3' DC B 19 C2' -0.060 REMARK 500 DC B 19 N1 DC B 19 C6 -0.043 REMARK 500 DA B 22 C4 DA B 22 C5 -0.048 REMARK 500 DA B 22 C5 DA B 22 N7 -0.037 REMARK 500 DA B 22 C8 DA B 22 N9 -0.052 REMARK 500 DA B 22 N9 DA B 22 C4 -0.037 REMARK 500 DG B 23 C6 DG B 23 N1 -0.044 REMARK 500 DG B 24 C6 DG B 24 N1 -0.051 REMARK 500 DG B 24 C8 DG B 24 N9 -0.049 REMARK 500 DT C 29 C3' DT C 29 C2' -0.067 REMARK 500 DG C 30 N1 DG C 30 C2 -0.051 REMARK 500 DG C 31 C5' DG C 31 C4' 0.061 REMARK 500 DG C 31 C4' DG C 31 C3' -0.067 REMARK 500 DG C 31 C8 DG C 31 N9 0.059 REMARK 500 DT C 32 C5' DT C 32 C4' 0.058 REMARK 500 DT C 34 C5' DT C 34 C4' 0.067 REMARK 500 DT C 34 N3 DT C 34 C4 -0.049 REMARK 500 DT C 34 C5 DT C 34 C7 0.040 REMARK 500 DC C 36 P DC C 36 O5' 0.084 REMARK 500 DG D 37 C5' DG D 37 C4' 0.057 REMARK 500 DA D 41 C5' DA D 41 C4' 0.050 REMARK 500 DC D 43 N1 DC D 43 C2 -0.065 REMARK 500 DA D 44 C6 DA D 44 N1 -0.052 REMARK 500 DG D 48 C6 DG D 48 N1 -0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 C4' - C3' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC A 4 C4' - C3' - C2' ANGL. DEV. = -4.5 DEGREES REMARK 500 DT A 5 C4' - C3' - C2' ANGL. DEV. = -8.4 DEGREES REMARK 500 DT A 5 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT A 5 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG A 6 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 6 C4 - C5 - N7 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 6 C5 - N7 - C8 ANGL. DEV. = -3.5 DEGREES REMARK 500 DG A 7 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DG A 7 C4' - C3' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG A 7 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG A 7 C4 - C5 - N7 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG A 7 C5 - N7 - C8 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG A 7 C8 - N9 - C1' ANGL. DEV. = 9.1 DEGREES REMARK 500 DT A 8 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DT A 8 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT A 10 O4' - C4' - C3' ANGL. DEV. = 3.8 DEGREES REMARK 500 DT A 10 N1 - C2 - N3 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT A 10 C4 - C5 - C6 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT A 10 C5 - C6 - N1 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT A 10 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT A 10 C5 - C4 - O4 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT A 10 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC A 11 O4' - C4' - C3' ANGL. DEV. = 4.6 DEGREES REMARK 500 DC A 11 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC A 11 N1 - C2 - O2 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC A 11 N3 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG B 13 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG B 14 P - O5' - C5' ANGL. DEV. = -9.7 DEGREES REMARK 500 DG B 14 O4' - C1' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 DA B 15 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 16 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG B 16 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG B 16 N1 - C6 - O6 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA B 17 C4' - C3' - C2' ANGL. DEV. = -7.9 DEGREES REMARK 500 DC B 18 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC B 19 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC B 19 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC B 19 N3 - C2 - O2 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG B 21 C4' - C3' - C2' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG B 21 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG B 21 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG B 23 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES REMARK 500 DG B 23 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG B 24 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 24 N1 - C6 - O6 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC C 25 C4' - C3' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 DC C 26 N1 - C2 - O2 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC C 28 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 92 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C 30 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 49 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 N7 REMARK 620 2 CPT A 49 N1 83.2 REMARK 620 3 CPT A 49 N2 154.9 98.5 REMARK 620 4 DG A 6 C8 24.9 83.0 178.4 REMARK 620 5 DG A 6 C5 23.3 101.8 135.8 43.4 REMARK 620 6 DG A 7 N7 99.5 160.4 70.9 107.6 77.2 REMARK 620 7 DG A 7 C8 83.9 164.1 97.1 81.4 68.4 32.7 REMARK 620 8 DG A 7 C5 94.4 150.6 71.8 106.8 71.3 11.0 40.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT C 50 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 30 N7 REMARK 620 2 CPT C 50 N1 88.1 REMARK 620 3 CPT C 50 N2 155.2 91.8 REMARK 620 4 DG C 30 C8 25.5 87.8 179.2 REMARK 620 5 DG C 30 C5 21.2 104.2 138.3 42.5 REMARK 620 6 DG C 31 N7 99.9 157.1 72.0 108.6 79.8 REMARK 620 7 DG C 31 C8 84.2 169.5 98.2 82.2 70.3 32.6 REMARK 620 8 DG C 31 C5 93.3 146.2 73.4 107.3 72.2 13.8 41.8 REMARK 620 N 1 2 3 4 5 6 7 DBREF 1AIO A 1 12 PDB 1AIO 1AIO 1 12 DBREF 1AIO B 13 24 PDB 1AIO 1AIO 13 24 DBREF 1AIO C 25 36 PDB 1AIO 1AIO 25 36 DBREF 1AIO D 37 48 PDB 1AIO 1AIO 37 48 SEQRES 1 A 12 DC DC BRU DC DT DG DG DT DC DT DC DC SEQRES 1 B 12 DG DG DA DG DA DC DC DA DG DA DG DG SEQRES 1 C 12 DC DC BRU DC DT DG DG DT DC DT DC DC SEQRES 1 D 12 DG DG DA DG DA DC DC DA DG DA DG DG MODRES 1AIO BRU A 3 DU MODRES 1AIO BRU C 27 DU HET BRU A 3 20 HET BRU C 27 20 HET CPT A 49 3 HET CPT C 50 3 HETNAM BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM CPT CISPLATIN HETSYN CPT DIAMMINE(DICHLORO)PLATINUM FORMUL 1 BRU 2(C9 H12 BR N2 O8 P) FORMUL 5 CPT 2(CL2 H6 N2 PT) FORMUL 7 HOH *62(H2 O) LINK O3' DC A 2 P BRU A 3 1555 1555 1.62 LINK O3' BRU A 3 P DC A 4 1555 1555 1.56 LINK O3' DC C 26 P BRU C 27 1555 1555 1.61 LINK O3' BRU C 27 P DC C 28 1555 1555 1.56 LINK N7 DG A 6 PT1 CPT A 49 1555 1555 1.86 LINK C8 DG A 6 PT1 CPT A 49 1555 1555 2.71 LINK C5 DG A 6 PT1 CPT A 49 1555 1555 2.92 LINK N7 DG A 7 PT1 CPT A 49 1555 1555 1.93 LINK C8 DG A 7 PT1 CPT A 49 1555 1555 2.45 LINK C5 DG A 7 PT1 CPT A 49 1555 1555 3.26 LINK N7 DG C 30 PT1 CPT C 50 1555 1555 1.91 LINK C8 DG C 30 PT1 CPT C 50 1555 1555 2.71 LINK C5 DG C 30 PT1 CPT C 50 1555 1555 2.99 LINK N7 DG C 31 PT1 CPT C 50 1555 1555 1.90 LINK C8 DG C 31 PT1 CPT C 50 1555 1555 2.46 LINK C5 DG C 31 PT1 CPT C 50 1555 1555 3.19 SITE 1 AC1 3 DT A 5 DG A 6 DG A 7 SITE 1 AC2 3 DT C 29 DG C 30 DG C 31 CRYST1 31.270 35.460 47.010 79.81 84.75 82.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031980 -0.004046 -0.002294 0.00000 SCALE2 0.000000 0.028426 -0.004829 0.00000 SCALE3 0.000000 0.000000 0.021668 0.00000