HEADER RNA 06-MAY-97 1AJL TITLE FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*GP*GP*UP*AP*AP*UP*AP*AP*GP*CP*UP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FIVE-NUCLEOTIDE BULGE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*GP*AP*GP*UP*AP*CP*C)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: FIVE-NUCLEOTIDE BULGE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRAHYMENA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 5911; SOURCE 4 OTHER_DETAILS: IN VITRO TRANSCRIPT FROM OLIGONUCLEOTIDE TEMPLATE SOURCE 5 USING T7 RNA POLYMERASE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: TETRAHYMENA THERMOPHILA; SOURCE 8 ORGANISM_TAXID: 5911; SOURCE 9 OTHER_DETAILS: IN VITRO TRANSCRIPT FROM OLIGONUCLEOTIDE TEMPLATE SOURCE 10 USING T7 RNA POLYMERASE KEYWDS RNA BULGE LOOP, GROUP I INTRON, RIBONUCLEIC ACID, RNA EXPDTA SOLUTION NMR AUTHOR K.J.LUEBKE,S.M.LANDRY,I.TINOCO JUNIOR REVDAT 4 22-MAY-24 1AJL 1 REMARK REVDAT 3 16-FEB-22 1AJL 1 REMARK REVDAT 2 24-FEB-09 1AJL 1 VERSN REVDAT 1 07-JUL-97 1AJL 0 JRNL AUTH K.J.LUEBKE,S.M.LANDRY,I.TINOCO JRNL TITL SOLUTION CONFORMATION OF A FIVE-NUCLEOTIDE RNA BULGE LOOP JRNL TITL 2 FROM A GROUP I INTRON. JRNL REF BIOCHEMISTRY V. 36 10246 1997 JRNL PUBL UNIVERSITY OF CALIFORNIA, BERKELEY (THESIS) JRNL REFN ISSN 0006-2960 JRNL PMID 9254623 JRNL DOI 10.1021/BI9701540 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1AJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170896. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; DQF-COSY; HMQC; TOCSY; REMARK 210 TOCSY-NOESY; H-P CORRELATED REMARK 210 SPECTROMETER FIELD STRENGTH : 300 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX300; AMX600; GN500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; GE REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX230, X-PLOR2.2 REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO2' A A 9 OP2 G A 10 1.50 REMARK 500 O2 U A 4 H61 A B 22 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AJT RELATED DB: PDB REMARK 900 1 STRUCTURE DBREF 1AJL A 2 13 PDB 1AJL 1AJL 2 13 DBREF 1AJL B 18 24 PDB 1AJL 1AJL 18 24 SEQRES 1 A 12 G G U A A U A A G C U C SEQRES 1 B 7 G A G U A C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000