data_1AKO # _entry.id 1AKO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AKO pdb_00001ako 10.2210/pdb1ako/pdb WWPDB D_1000170935 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-08-20 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AKO _pdbx_database_status.recvd_initial_deposition_date 1997-05-26 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mol, C.D.' 1 'Kuo, C.-F.' 2 'Thayer, M.M.' 3 'Cunningham, R.P.' 4 'Tainer, J.A.' 5 # _citation.id primary _citation.title 'Structure and function of the multifunctional DNA-repair enzyme exonuclease III.' _citation.journal_abbrev Nature _citation.journal_volume 374 _citation.page_first 381 _citation.page_last 386 _citation.year 1995 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7885481 _citation.pdbx_database_id_DOI 10.1038/374381a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mol, C.D.' 1 ? primary 'Kuo, C.F.' 2 ? primary 'Thayer, M.M.' 3 ? primary 'Cunningham, R.P.' 4 ? primary 'Tainer, J.A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EXONUCLEASE III' 31011.172 1 3.1.11.2 ? ? ? 2 water nat water 18.015 190 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGF PGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC CVETGIDYEIRSMEKPSDHAPVWATFRR ; _entity_poly.pdbx_seq_one_letter_code_can ;MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGF PGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC CVETGIDYEIRSMEKPSDHAPVWATFRR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 PHE n 1 4 VAL n 1 5 SER n 1 6 PHE n 1 7 ASN n 1 8 ILE n 1 9 ASN n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 ALA n 1 14 ARG n 1 15 PRO n 1 16 HIS n 1 17 GLN n 1 18 LEU n 1 19 GLU n 1 20 ALA n 1 21 ILE n 1 22 VAL n 1 23 GLU n 1 24 LYS n 1 25 HIS n 1 26 GLN n 1 27 PRO n 1 28 ASP n 1 29 VAL n 1 30 ILE n 1 31 GLY n 1 32 LEU n 1 33 GLN n 1 34 GLU n 1 35 THR n 1 36 LYS n 1 37 VAL n 1 38 HIS n 1 39 ASP n 1 40 ASP n 1 41 MET n 1 42 PHE n 1 43 PRO n 1 44 LEU n 1 45 GLU n 1 46 GLU n 1 47 VAL n 1 48 ALA n 1 49 LYS n 1 50 LEU n 1 51 GLY n 1 52 TYR n 1 53 ASN n 1 54 VAL n 1 55 PHE n 1 56 TYR n 1 57 HIS n 1 58 GLY n 1 59 GLN n 1 60 LYS n 1 61 GLY n 1 62 HIS n 1 63 TYR n 1 64 GLY n 1 65 VAL n 1 66 ALA n 1 67 LEU n 1 68 LEU n 1 69 THR n 1 70 LYS n 1 71 GLU n 1 72 THR n 1 73 PRO n 1 74 ILE n 1 75 ALA n 1 76 VAL n 1 77 ARG n 1 78 ARG n 1 79 GLY n 1 80 PHE n 1 81 PRO n 1 82 GLY n 1 83 ASP n 1 84 ASP n 1 85 GLU n 1 86 GLU n 1 87 ALA n 1 88 GLN n 1 89 ARG n 1 90 ARG n 1 91 ILE n 1 92 ILE n 1 93 MET n 1 94 ALA n 1 95 GLU n 1 96 ILE n 1 97 PRO n 1 98 SER n 1 99 LEU n 1 100 LEU n 1 101 GLY n 1 102 ASN n 1 103 VAL n 1 104 THR n 1 105 VAL n 1 106 ILE n 1 107 ASN n 1 108 GLY n 1 109 TYR n 1 110 PHE n 1 111 PRO n 1 112 GLN n 1 113 GLY n 1 114 GLU n 1 115 SER n 1 116 ARG n 1 117 ASP n 1 118 HIS n 1 119 PRO n 1 120 ILE n 1 121 LYS n 1 122 PHE n 1 123 PRO n 1 124 ALA n 1 125 LYS n 1 126 ALA n 1 127 GLN n 1 128 PHE n 1 129 TYR n 1 130 GLN n 1 131 ASN n 1 132 LEU n 1 133 GLN n 1 134 ASN n 1 135 TYR n 1 136 LEU n 1 137 GLU n 1 138 THR n 1 139 GLU n 1 140 LEU n 1 141 LYS n 1 142 ARG n 1 143 ASP n 1 144 ASN n 1 145 PRO n 1 146 VAL n 1 147 LEU n 1 148 ILE n 1 149 MET n 1 150 GLY n 1 151 ASP n 1 152 MET n 1 153 ASN n 1 154 ILE n 1 155 SER n 1 156 PRO n 1 157 THR n 1 158 ASP n 1 159 LEU n 1 160 ASP n 1 161 ILE n 1 162 GLY n 1 163 ILE n 1 164 GLY n 1 165 GLU n 1 166 GLU n 1 167 ASN n 1 168 ARG n 1 169 LYS n 1 170 ARG n 1 171 TRP n 1 172 LEU n 1 173 ARG n 1 174 THR n 1 175 GLY n 1 176 LYS n 1 177 CYS n 1 178 SER n 1 179 PHE n 1 180 LEU n 1 181 PRO n 1 182 GLU n 1 183 GLU n 1 184 ARG n 1 185 GLU n 1 186 TRP n 1 187 MET n 1 188 ASP n 1 189 ARG n 1 190 LEU n 1 191 MET n 1 192 SER n 1 193 TRP n 1 194 GLY n 1 195 LEU n 1 196 VAL n 1 197 ASP n 1 198 THR n 1 199 PHE n 1 200 ARG n 1 201 HIS n 1 202 ALA n 1 203 ASN n 1 204 PRO n 1 205 GLN n 1 206 THR n 1 207 ALA n 1 208 ASP n 1 209 ARG n 1 210 PHE n 1 211 SER n 1 212 TRP n 1 213 PHE n 1 214 ASP n 1 215 TYR n 1 216 ARG n 1 217 SER n 1 218 LYS n 1 219 GLY n 1 220 PHE n 1 221 ASP n 1 222 ASP n 1 223 ASN n 1 224 ARG n 1 225 GLY n 1 226 LEU n 1 227 ARG n 1 228 ILE n 1 229 ASP n 1 230 LEU n 1 231 LEU n 1 232 LEU n 1 233 ALA n 1 234 SER n 1 235 GLN n 1 236 PRO n 1 237 LEU n 1 238 ALA n 1 239 GLU n 1 240 CYS n 1 241 CYS n 1 242 VAL n 1 243 GLU n 1 244 THR n 1 245 GLY n 1 246 ILE n 1 247 ASP n 1 248 TYR n 1 249 GLU n 1 250 ILE n 1 251 ARG n 1 252 SER n 1 253 MET n 1 254 GLU n 1 255 LYS n 1 256 PRO n 1 257 SER n 1 258 ASP n 1 259 HIS n 1 260 ALA n 1 261 PRO n 1 262 VAL n 1 263 TRP n 1 264 ALA n 1 265 THR n 1 266 PHE n 1 267 ARG n 1 268 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene XTH _entity_src_gen.gene_src_species 'Escherichia coli' _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line BL21 _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET24A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 MET 41 41 41 MET MET A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 HIS 118 118 118 HIS HIS A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 TYR 129 129 129 TYR TYR A . n A 1 130 GLN 130 130 130 GLN GLN A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 TYR 135 135 135 TYR TYR A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 THR 138 138 138 THR THR A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 ASN 144 144 144 ASN ASN A . n A 1 145 PRO 145 145 145 PRO PRO A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 MET 149 149 149 MET MET A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 MET 152 152 152 MET MET A . n A 1 153 ASN 153 153 153 ASN ASN A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 ARG 170 170 170 ARG ARG A . n A 1 171 TRP 171 171 171 TRP TRP A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 CYS 177 177 177 CYS CYS A . n A 1 178 SER 178 178 178 SER SER A . n A 1 179 PHE 179 179 179 PHE PHE A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 PRO 181 181 181 PRO PRO A . n A 1 182 GLU 182 182 182 GLU GLU A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 ARG 184 184 184 ARG ARG A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 TRP 186 186 186 TRP TRP A . n A 1 187 MET 187 187 187 MET MET A . n A 1 188 ASP 188 188 188 ASP ASP A . n A 1 189 ARG 189 189 189 ARG ARG A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 MET 191 191 191 MET MET A . n A 1 192 SER 192 192 192 SER SER A . n A 1 193 TRP 193 193 193 TRP TRP A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 VAL 196 196 196 VAL VAL A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 PHE 199 199 199 PHE PHE A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 HIS 201 201 201 HIS HIS A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 PRO 204 204 204 PRO PRO A . n A 1 205 GLN 205 205 205 GLN GLN A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 ALA 207 207 207 ALA ALA A . n A 1 208 ASP 208 208 208 ASP ASP A . n A 1 209 ARG 209 209 209 ARG ARG A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 SER 211 211 211 SER SER A . n A 1 212 TRP 212 212 212 TRP TRP A . n A 1 213 PHE 213 213 213 PHE PHE A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 TYR 215 215 215 TYR TYR A . n A 1 216 ARG 216 216 216 ARG ARG A . n A 1 217 SER 217 217 217 SER SER A . n A 1 218 LYS 218 218 218 LYS LYS A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 PHE 220 220 220 PHE PHE A . n A 1 221 ASP 221 221 221 ASP ASP A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 ASN 223 223 223 ASN ASN A . n A 1 224 ARG 224 224 224 ARG ARG A . n A 1 225 GLY 225 225 225 GLY GLY A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 ARG 227 227 227 ARG ARG A . n A 1 228 ILE 228 228 228 ILE ILE A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 LEU 231 231 231 LEU LEU A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 SER 234 234 234 SER SER A . n A 1 235 GLN 235 235 235 GLN GLN A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 ALA 238 238 238 ALA ALA A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 CYS 240 240 240 CYS CYS A . n A 1 241 CYS 241 241 241 CYS CYS A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 GLU 243 243 243 GLU GLU A . n A 1 244 THR 244 244 244 THR THR A . n A 1 245 GLY 245 245 245 GLY GLY A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 ASP 247 247 247 ASP ASP A . n A 1 248 TYR 248 248 248 TYR TYR A . n A 1 249 GLU 249 249 249 GLU GLU A . n A 1 250 ILE 250 250 250 ILE ILE A . n A 1 251 ARG 251 251 251 ARG ARG A . n A 1 252 SER 252 252 252 SER SER A . n A 1 253 MET 253 253 253 MET MET A . n A 1 254 GLU 254 254 254 GLU GLU A . n A 1 255 LYS 255 255 255 LYS LYS A . n A 1 256 PRO 256 256 256 PRO PRO A . n A 1 257 SER 257 257 257 SER SER A . n A 1 258 ASP 258 258 258 ASP ASP A . n A 1 259 HIS 259 259 259 HIS HIS A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 PRO 261 261 261 PRO PRO A . n A 1 262 VAL 262 262 262 VAL VAL A . n A 1 263 TRP 263 263 263 TRP TRP A . n A 1 264 ALA 264 264 264 ALA ALA A . n A 1 265 THR 265 265 265 THR THR A . n A 1 266 PHE 266 266 266 PHE PHE A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 ARG 268 268 268 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 269 1 HOH HOH A . B 2 HOH 2 270 2 HOH HOH A . B 2 HOH 3 271 3 HOH HOH A . B 2 HOH 4 272 4 HOH HOH A . B 2 HOH 5 273 5 HOH HOH A . B 2 HOH 6 274 6 HOH HOH A . B 2 HOH 7 275 7 HOH HOH A . B 2 HOH 8 276 8 HOH HOH A . B 2 HOH 9 277 9 HOH HOH A . B 2 HOH 10 278 10 HOH HOH A . B 2 HOH 11 279 11 HOH HOH A . B 2 HOH 12 280 12 HOH HOH A . B 2 HOH 13 281 14 HOH HOH A . B 2 HOH 14 282 15 HOH HOH A . B 2 HOH 15 283 16 HOH HOH A . B 2 HOH 16 284 17 HOH HOH A . B 2 HOH 17 285 18 HOH HOH A . B 2 HOH 18 286 19 HOH HOH A . B 2 HOH 19 287 20 HOH HOH A . B 2 HOH 20 288 21 HOH HOH A . B 2 HOH 21 289 22 HOH HOH A . B 2 HOH 22 290 23 HOH HOH A . B 2 HOH 23 291 24 HOH HOH A . B 2 HOH 24 292 25 HOH HOH A . B 2 HOH 25 293 26 HOH HOH A . B 2 HOH 26 294 27 HOH HOH A . B 2 HOH 27 295 28 HOH HOH A . B 2 HOH 28 296 29 HOH HOH A . B 2 HOH 29 297 30 HOH HOH A . B 2 HOH 30 298 31 HOH HOH A . B 2 HOH 31 299 32 HOH HOH A . B 2 HOH 32 300 33 HOH HOH A . B 2 HOH 33 301 34 HOH HOH A . B 2 HOH 34 302 35 HOH HOH A . B 2 HOH 35 303 36 HOH HOH A . B 2 HOH 36 304 37 HOH HOH A . B 2 HOH 37 305 38 HOH HOH A . B 2 HOH 38 306 39 HOH HOH A . B 2 HOH 39 307 40 HOH HOH A . B 2 HOH 40 308 41 HOH HOH A . B 2 HOH 41 309 42 HOH HOH A . B 2 HOH 42 310 43 HOH HOH A . B 2 HOH 43 311 44 HOH HOH A . B 2 HOH 44 312 45 HOH HOH A . B 2 HOH 45 313 46 HOH HOH A . B 2 HOH 46 314 47 HOH HOH A . B 2 HOH 47 315 48 HOH HOH A . B 2 HOH 48 316 49 HOH HOH A . B 2 HOH 49 317 50 HOH HOH A . B 2 HOH 50 318 51 HOH HOH A . B 2 HOH 51 319 52 HOH HOH A . B 2 HOH 52 320 53 HOH HOH A . B 2 HOH 53 321 54 HOH HOH A . B 2 HOH 54 322 55 HOH HOH A . B 2 HOH 55 323 56 HOH HOH A . B 2 HOH 56 324 57 HOH HOH A . B 2 HOH 57 325 58 HOH HOH A . B 2 HOH 58 326 59 HOH HOH A . B 2 HOH 59 327 60 HOH HOH A . B 2 HOH 60 328 61 HOH HOH A . B 2 HOH 61 329 62 HOH HOH A . B 2 HOH 62 330 63 HOH HOH A . B 2 HOH 63 331 64 HOH HOH A . B 2 HOH 64 332 65 HOH HOH A . B 2 HOH 65 333 66 HOH HOH A . B 2 HOH 66 334 67 HOH HOH A . B 2 HOH 67 335 68 HOH HOH A . B 2 HOH 68 336 69 HOH HOH A . B 2 HOH 69 337 70 HOH HOH A . B 2 HOH 70 338 71 HOH HOH A . B 2 HOH 71 339 72 HOH HOH A . B 2 HOH 72 340 73 HOH HOH A . B 2 HOH 73 341 74 HOH HOH A . B 2 HOH 74 342 75 HOH HOH A . B 2 HOH 75 343 76 HOH HOH A . B 2 HOH 76 344 77 HOH HOH A . B 2 HOH 77 345 78 HOH HOH A . B 2 HOH 78 346 79 HOH HOH A . B 2 HOH 79 347 80 HOH HOH A . B 2 HOH 80 348 81 HOH HOH A . B 2 HOH 81 349 82 HOH HOH A . B 2 HOH 82 350 83 HOH HOH A . B 2 HOH 83 351 84 HOH HOH A . B 2 HOH 84 352 85 HOH HOH A . B 2 HOH 85 353 86 HOH HOH A . B 2 HOH 86 354 87 HOH HOH A . B 2 HOH 87 355 88 HOH HOH A . B 2 HOH 88 356 89 HOH HOH A . B 2 HOH 89 357 90 HOH HOH A . B 2 HOH 90 358 91 HOH HOH A . B 2 HOH 91 359 92 HOH HOH A . B 2 HOH 92 360 93 HOH HOH A . B 2 HOH 93 361 94 HOH HOH A . B 2 HOH 94 362 95 HOH HOH A . B 2 HOH 95 363 96 HOH HOH A . B 2 HOH 96 364 97 HOH HOH A . B 2 HOH 97 365 98 HOH HOH A . B 2 HOH 98 366 99 HOH HOH A . B 2 HOH 99 367 100 HOH HOH A . B 2 HOH 100 368 101 HOH HOH A . B 2 HOH 101 369 102 HOH HOH A . B 2 HOH 102 370 103 HOH HOH A . B 2 HOH 103 371 104 HOH HOH A . B 2 HOH 104 372 105 HOH HOH A . B 2 HOH 105 373 106 HOH HOH A . B 2 HOH 106 374 107 HOH HOH A . B 2 HOH 107 375 108 HOH HOH A . B 2 HOH 108 376 109 HOH HOH A . B 2 HOH 109 377 110 HOH HOH A . B 2 HOH 110 378 111 HOH HOH A . B 2 HOH 111 379 112 HOH HOH A . B 2 HOH 112 380 113 HOH HOH A . B 2 HOH 113 381 114 HOH HOH A . B 2 HOH 114 382 115 HOH HOH A . B 2 HOH 115 383 116 HOH HOH A . B 2 HOH 116 384 117 HOH HOH A . B 2 HOH 117 385 118 HOH HOH A . B 2 HOH 118 386 119 HOH HOH A . B 2 HOH 119 387 120 HOH HOH A . B 2 HOH 120 388 121 HOH HOH A . B 2 HOH 121 389 122 HOH HOH A . B 2 HOH 122 390 123 HOH HOH A . B 2 HOH 123 391 124 HOH HOH A . B 2 HOH 124 392 125 HOH HOH A . B 2 HOH 125 393 126 HOH HOH A . B 2 HOH 126 394 127 HOH HOH A . B 2 HOH 127 395 128 HOH HOH A . B 2 HOH 128 396 129 HOH HOH A . B 2 HOH 129 397 130 HOH HOH A . B 2 HOH 130 398 131 HOH HOH A . B 2 HOH 131 399 132 HOH HOH A . B 2 HOH 132 400 133 HOH HOH A . B 2 HOH 133 401 134 HOH HOH A . B 2 HOH 134 402 135 HOH HOH A . B 2 HOH 135 403 136 HOH HOH A . B 2 HOH 136 404 137 HOH HOH A . B 2 HOH 137 405 138 HOH HOH A . B 2 HOH 138 406 139 HOH HOH A . B 2 HOH 139 407 140 HOH HOH A . B 2 HOH 140 408 141 HOH HOH A . B 2 HOH 141 409 142 HOH HOH A . B 2 HOH 142 410 143 HOH HOH A . B 2 HOH 143 411 144 HOH HOH A . B 2 HOH 144 412 145 HOH HOH A . B 2 HOH 145 413 146 HOH HOH A . B 2 HOH 146 414 147 HOH HOH A . B 2 HOH 147 415 148 HOH HOH A . B 2 HOH 148 416 149 HOH HOH A . B 2 HOH 149 417 150 HOH HOH A . B 2 HOH 150 418 151 HOH HOH A . B 2 HOH 151 419 152 HOH HOH A . B 2 HOH 152 420 153 HOH HOH A . B 2 HOH 153 421 154 HOH HOH A . B 2 HOH 154 422 155 HOH HOH A . B 2 HOH 155 423 156 HOH HOH A . B 2 HOH 156 424 157 HOH HOH A . B 2 HOH 157 425 158 HOH HOH A . B 2 HOH 158 426 159 HOH HOH A . B 2 HOH 159 427 160 HOH HOH A . B 2 HOH 160 428 161 HOH HOH A . B 2 HOH 161 429 162 HOH HOH A . B 2 HOH 162 430 163 HOH HOH A . B 2 HOH 163 431 164 HOH HOH A . B 2 HOH 164 432 165 HOH HOH A . B 2 HOH 165 433 166 HOH HOH A . B 2 HOH 166 434 167 HOH HOH A . B 2 HOH 167 435 168 HOH HOH A . B 2 HOH 168 436 169 HOH HOH A . B 2 HOH 169 437 170 HOH HOH A . B 2 HOH 170 438 171 HOH HOH A . B 2 HOH 171 439 172 HOH HOH A . B 2 HOH 172 440 173 HOH HOH A . B 2 HOH 173 441 174 HOH HOH A . B 2 HOH 174 442 175 HOH HOH A . B 2 HOH 175 443 176 HOH HOH A . B 2 HOH 176 444 177 HOH HOH A . B 2 HOH 177 445 178 HOH HOH A . B 2 HOH 178 446 179 HOH HOH A . B 2 HOH 179 447 180 HOH HOH A . B 2 HOH 180 448 181 HOH HOH A . B 2 HOH 181 449 182 HOH HOH A . B 2 HOH 182 450 183 HOH HOH A . B 2 HOH 183 451 184 HOH HOH A . B 2 HOH 184 452 185 HOH HOH A . B 2 HOH 185 453 186 HOH HOH A . B 2 HOH 186 454 187 HOH HOH A . B 2 HOH 187 455 188 HOH HOH A . B 2 HOH 188 456 189 HOH HOH A . B 2 HOH 189 457 190 HOH HOH A . B 2 HOH 190 458 191 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASES phasing . ? 1 X-PLOR 'model building' 3.8 ? 2 X-PLOR refinement 3.8 ? 3 XENGEN 'data reduction' 'V. 1.3' ? 4 XENGEN 'data scaling' 'V. 1.3' ? 5 X-PLOR phasing 3.8 ? 6 # _cell.entry_id 1AKO _cell.length_a 107.800 _cell.length_b 107.800 _cell.length_c 42.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AKO _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # _exptl.entry_id 1AKO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 47. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '13% PEG 4000, 1.0 M IMIDAZOLE/ MALATE, PH 7.0' # _diffrn.id 1 _diffrn.ambient_temp 292 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type XENTRONICS _diffrn_detector.pdbx_collection_date 1992-05 _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AKO _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.7 _reflns.number_obs 28817 _reflns.number_all ? _reflns.percent_possible_obs 92. _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0850000 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.9 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.78 _reflns_shell.percent_possible_all 62. _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1AKO _refine.ls_number_reflns_obs 27067 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 100000. _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.7 _refine.ls_percent_reflns_obs 86.9 _refine.ls_R_factor_obs 0.1690000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1690000 _refine.ls_R_factor_R_free 0.2020000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10. _refine.ls_number_reflns_R_free 2769 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 17.7 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'A POSTERIORI' _refine.details ;AN OVERALL BULK SOLVENT CORRECTION WAS APPLIED USNG X-PLOR V3.8 AND LOW RESOLUTION DATA INCLUDED TO 20 ANGSTROMS THE THREE RAMACHANDRAN OUTLIER RESIDUES (TYR 63, GLU 114, AND SER 178) ALL RESIDE IN LOOPS ON THE DNA BINDING SURFACE OF THE ENZYME AND MAY PLAY ROLES IN ENZYME FUNCTION. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MULTIPLE ISOMORPHOUS REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2183 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 190 _refine_hist.number_atoms_total 2373 _refine_hist.d_res_high 1.7 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.391 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.19 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.181 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.47 ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.23 ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 3.37 ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 5.25 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.78 _refine_ls_shell.number_reflns_R_work 2112 _refine_ls_shell.R_factor_R_work 0.3140000 _refine_ls_shell.percent_reflns_obs 62.0 _refine_ls_shell.R_factor_R_free 0.3120000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 7.0 _refine_ls_shell.number_reflns_R_free 270 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM19.SOL TOPH19.SOL 'X-RAY DIFFRACTION' 3 ? TOPH19.PEP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1AKO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AKO _struct.title 'EXONUCLEASE III FROM ESCHERICHIA COLI' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AKO _struct_keywords.pdbx_keywords NUCLEASE _struct_keywords.text 'NUCLEASE, EXONUCLEASE, AP-ENDONUCLEASE, DNA REPAIR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EX3_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P09030 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGF PGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC CVETGIDYEIRSMEKPSDHAPVWATFRR ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1AKO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 268 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P09030 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 268 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 268 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 11 ? ALA A 13 ? LEU A 11 ALA A 13 5 ? 3 HELX_P HELX_P2 2 PRO A 15 ? HIS A 25 ? PRO A 15 HIS A 25 1 ? 11 HELX_P HELX_P3 3 ASP A 39 ? MET A 41 ? ASP A 39 MET A 41 5 ? 3 HELX_P HELX_P4 4 LEU A 44 ? LYS A 49 ? LEU A 44 LYS A 49 1 ? 6 HELX_P HELX_P5 5 GLU A 85 ? ARG A 89 ? GLU A 85 ARG A 89 1 ? 5 HELX_P HELX_P6 6 LYS A 121 ? GLU A 139 ? LYS A 121 GLU A 139 1 ? 19 HELX_P HELX_P7 7 ASP A 158 ? ASP A 160 ? ASP A 158 ASP A 160 5 ? 3 HELX_P HELX_P8 8 GLU A 165 ? THR A 174 ? GLU A 165 THR A 174 1 ? 10 HELX_P HELX_P9 9 PRO A 181 ? GLY A 194 ? PRO A 181 GLY A 194 1 ? 14 HELX_P HELX_P10 10 THR A 198 ? ALA A 202 ? THR A 198 ALA A 202 1 ? 5 HELX_P HELX_P11 11 GLY A 219 ? ASP A 222 ? GLY A 219 ASP A 222 1 ? 4 HELX_P HELX_P12 12 GLN A 235 ? CYS A 240 ? GLN A 235 CYS A 240 1 ? 6 HELX_P HELX_P13 13 TYR A 248 ? SER A 252 ? TYR A 248 SER A 252 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 53 ? HIS A 57 ? ASN A 53 HIS A 57 A 2 VAL A 65 ? THR A 69 ? VAL A 65 THR A 69 A 3 VAL A 29 ? GLN A 33 ? VAL A 29 GLN A 33 A 4 LYS A 2 ? ASN A 7 ? LYS A 2 ASN A 7 A 5 VAL A 262 ? PHE A 266 ? VAL A 262 PHE A 266 A 6 CYS A 241 ? ILE A 246 ? CYS A 241 ILE A 246 B 1 ALA A 75 ? ARG A 78 ? ALA A 75 ARG A 78 B 2 ILE A 91 ? SER A 98 ? ILE A 91 SER A 98 B 3 GLY A 101 ? TYR A 109 ? GLY A 101 TYR A 109 B 4 VAL A 146 ? ASP A 151 ? VAL A 146 ASP A 151 B 5 ASP A 229 ? SER A 234 ? ASP A 229 SER A 234 B 6 LEU A 195 ? ASP A 197 ? LEU A 195 ASP A 197 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 53 ? O ASN A 53 N THR A 69 ? N THR A 69 A 2 3 O ALA A 66 ? O ALA A 66 N LEU A 32 ? N LEU A 32 A 3 4 O VAL A 29 ? O VAL A 29 N VAL A 4 ? N VAL A 4 A 4 5 O PHE A 3 ? O PHE A 3 N ALA A 264 ? N ALA A 264 A 5 6 O TRP A 263 ? O TRP A 263 N GLY A 245 ? N GLY A 245 B 1 2 O ALA A 75 ? O ALA A 75 N GLU A 95 ? N GLU A 95 B 2 3 O ILE A 92 ? O ILE A 92 N ASN A 107 ? N ASN A 107 B 3 4 O THR A 104 ? O THR A 104 N LEU A 147 ? N LEU A 147 B 4 5 O ILE A 148 ? O ILE A 148 N LEU A 232 ? N LEU A 232 B 5 6 O ALA A 233 ? O ALA A 233 N VAL A 196 ? N VAL A 196 # _struct_site.id MG1 _struct_site.pdbx_evidence_code Unknown _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'MG BINDING SITE.' # _struct_site_gen.id 1 _struct_site_gen.site_id MG1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id GLU _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 34 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id GLU _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 34 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 63 ? ? 49.78 -145.84 2 1 GLU A 114 ? ? 65.56 -71.57 3 1 SER A 178 ? ? 139.85 -45.50 4 1 PHE A 179 ? ? -142.22 34.28 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 1AKO _atom_sites.fract_transf_matrix[1][1] 0.009276 _atom_sites.fract_transf_matrix[1][2] 0.005356 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010712 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023364 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_