HEADER ANTIBIOTIC 11-JUN-97 1AL4 TITLE GRAMICIDIN D FROM BACILLUS BREVIS (N-PROPANOL SOLVATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRAMICIDIN D; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS BREVIS; SOURCE 3 ORGANISM_TAXID: 1393 KEYWDS ANTIBIOTIC, ANTIFUNGAL, ANTIBACTERIAL, LINEAR GRAMICIDIN, MEMBRANE KEYWDS 2 ION CHANNEL EXPDTA X-RAY DIFFRACTION AUTHOR B.M.BURKHART,R.M.GASSMAN,W.A.PANGBORN,W.L.DUAX REVDAT 6 15-NOV-23 1AL4 1 LINK ATOM REVDAT 5 02-AUG-23 1AL4 1 REMARK SEQADV LINK REVDAT 4 27-JUL-11 1AL4 1 ATOM DBREF HETATM REMARK REVDAT 4 2 1 SEQRES REVDAT 3 13-JUL-11 1AL4 1 VERSN REVDAT 2 24-FEB-09 1AL4 1 VERSN REVDAT 1 04-MAR-98 1AL4 0 JRNL AUTH B.M.BURKHART,R.M.GASSMAN,D.A.LANGS,W.A.PANGBORN,W.L.DUAX JRNL TITL HETERODIMER FORMATION AND CRYSTAL NUCLEATION OF GRAMICIDIN D JRNL REF BIOPHYS.J. V. 75 2135 1998 JRNL REFN ISSN 0006-3495 JRNL PMID 9788907 JRNL DOI 10.1016/S0006-3495(98)77656-8 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : 5% OF REFLECTIONS IN THIN REMARK 3 RESOLUTION SHELLS. REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.087 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.085 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.121 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 563 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 9571 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.086 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.084 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.120 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 545 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 9165 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 292 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 316.72 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 369.47 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 8 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 3746 REMARK 3 NUMBER OF RESTRAINTS : 7423 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 ANGLE DISTANCES (A) : 0.033 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.411 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.166 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.105 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.005 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.028 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.029 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER (G = 0.5373 U = 0.7755) REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: MODIFIED ENGH AND HUBER FOR ETHANOLAMINE BASED ON REMARK 3 SERINE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : SEP-96 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67561 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 47.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.06500 REMARK 200 R SYM FOR SHELL (I) : 0.06500 REMARK 200 FOR SHELL : 13.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR PLACEMENT; REMARK 200 DIFFERENCE MAPS REMARK 200 SOFTWARE USED: SHELXL-97 REMARK 200 STARTING MODEL: PDB ENTRY 1ALZ REMARK 200 REMARK 200 REMARK: ISOMORPHOUS TO 1ALZ REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED BY BATCH METHODS FROM A REMARK 280 SATURATED SOLUTION OF GRAMICIDIN D IN N-PROPANOL, PH 7.0, BATCH REMARK 280 METHOD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.21700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 12.07400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.23050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 12.07400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.21700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 16.23050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS REMARK 400 INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM REMARK 400 BACILLUS BREVIS AND CALLED COLLECTIVELY GRAMICIDIN D. REMARK 400 HERE, GRAMICIDIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 THE GRAMICIDIN D IS POLYPEPTIDE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: GRAMICIDIN D REMARK 400 CHAIN: A, B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: GRAMICIDIN D IS A HEXADECAMERIC HELICAL PEPTIDE WITH REMARK 400 ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS REMARK 400 FORMYLATED (RESIDUE 1). THE C-TERM IS CAPPED WITH REMARK 400 ETHANOLAMINE (RESIDUE 16). REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE1 TRP A 15 HO POL A 502 1.10 REMARK 500 H DLE B 4 H12 POL B 504 1.28 REMARK 500 HE1 TRP A 9 HO POL A 507 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 5 86.90 -160.27 REMARK 500 TRP A 9 106.14 -160.82 REMARK 500 TRP A 13 86.25 -157.75 REMARK 500 TRP A 15 64.13 -157.44 REMARK 500 TRP A 15 77.52 -157.44 REMARK 500 TRP B 13 88.62 -161.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN A OF GRAMICIDIN D REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF GRAMICIDIN D REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TK2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN S COMPLEXED WITH ALKALINE REMARK 900 PROTEINASE SAVINASE REMARK 900 RELATED ID: 2XDC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN A FROM CRYSTALS GROWN IN A LIPID REMARK 900 CUBIC PHASE. REMARK 900 RELATED ID: 1AV2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE REMARK 900 RELATED ID: 1BDW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN A FROM BACILLUS BREVIS REMARK 900 RELATED ID: 1C4D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE REMARK 900 RELATED ID: 1GMK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLRXED WITH POTASSIUM REMARK 900 THIOCYANATE REMARK 900 RELATED ID: 1GRM RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE GRAMICIDIN A REMARK 900 RELATED ID: 1JNO RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GRAMICIDIN A IN SODIUM DODECYL SULFATE REMARK 900 MICELLES REMARK 900 RELATED ID: 1KQE RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A IN BENZENE/ REMARK 900 ACETONE 10:1 REMARK 900 RELATED ID: 1MAG RELATED DB: PDB REMARK 900 SOLID STATE NMR STRUCTURE OF GRAMICIDIN A IN HYDRATED DMPC BILAYERS, REMARK 900 RELATED ID: 1MIC RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GRAMICIDIN A IN METHANOL IN THE PRESENCE OF REMARK 900 CACL REMARK 900 RELATED ID: 1NG8 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GRAMICIDIN A (W15G) IN SODIUM DODECYL SULFATE REMARK 900 MICELLES REMARK 900 RELATED ID: 1NRM RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE REMARK 900 MICELLES REMARK 900 RELATED ID: 1NRU RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE REMARK 900 MICELLES IN THE PRESENCE OF EXCESS NA+ REMARK 900 RELATED ID: 1NT5 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GRAMICIDIN A (V1F) IN SODIUM DODECYL SULFATE REMARK 900 MICELLES REMARK 900 RELATED ID: 1JO3 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GRAMICIDIN B IN SODIUM DODECYL SULFATE REMARK 900 MICELLES REMARK 900 RELATED ID: 1JO4 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GRAMICIDIN C IN SODIUM DODECYL SULFATE REMARK 900 MICELLES REMARK 900 RELATED ID: 1NT6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE REMARK 900 MICELLES REMARK 900 RELATED ID: 1TKQ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN A IN A REMARK 900 MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE, IN THE PRESENCE OF CSCL REMARK 900 RELATED ID: 1W5U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL REMARK 900 RELATED ID: 2IZQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH KI IN METHANOL REMARK 900 RELATED ID: 3L8L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH NAI REMARK 900 RELATED ID: 1ALX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN D IN METHANOL REMARK 900 RELATED ID: 1ALZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL DBREF 1AL4 A 1 16 NOR NOR00243 NOR00243 1 16 DBREF 1AL4 B 1 16 NOR NOR00243 NOR00243 1 16 SEQADV 1AL4 QIL A 1 NOR NOR00243 FVA 1 MICROHETEROGENEITY SEQADV 1AL4 QIL B 1 NOR NOR00243 FVA 1 MICROHETEROGENEITY SEQRES 1 A 16 FVA GLY ALA DLE ALA DVA VAL DVA TRP DLE TRP DLE TRP SEQRES 2 A 16 DLE TRP ETA SEQRES 1 B 16 FVA GLY ALA DLE ALA DVA VAL DVA TRP DLE TRP DLE TRP SEQRES 2 B 16 DLE TRP ETA HET FVA A 1 19 HET QIL A 1 22 HET DLE A 4 19 HET DVA A 6 16 HET DVA A 8 16 HET DLE A 10 19 HET DLE A 12 19 HET DLE A 14 19 HET ETA A 16 30 HET FVA B 1 19 HET QIL B 1 22 HET DLE B 4 19 HET DVA B 6 16 HET DVA B 8 26 HET DLE B 10 19 HET DLE B 12 19 HET DLE B 14 19 HET ETA B 16 10 HET POL A 502 24 HET POL A 503 36 HET POL A 506 48 HET POL A 507 24 HET POL A 508 24 HET POL A 509 24 HET POL B 501 12 HET POL B 504 24 HET POL B 505 24 HET POL B 510 24 HETNAM FVA N-FORMYL-L-VALINE HETNAM QIL N-FORMYL-L-ISOLEUCINE HETNAM DLE D-LEUCINE HETNAM DVA D-VALINE HETNAM ETA ETHANOLAMINE HETNAM POL N-PROPANOL HETSYN POL 1-PROPONOL FORMUL 1 FVA 2(C6 H11 N O3) FORMUL 1 QIL 2(C7 H13 N O3) FORMUL 1 DLE 8(C6 H13 N O2) FORMUL 1 DVA 4(C5 H11 N O2) FORMUL 1 ETA 2(C2 H7 N O) FORMUL 3 POL 10(C3 H8 O) SHEET 1 AA 2 GLY A 2 DLE A 14 0 SHEET 2 AA 2 GLY B 2 DLE B 14 -1 O ALA B 3 N TRP A 13 LINK C AFVA A 1 N GLY A 2 1555 1555 1.31 LINK C BQIL A 1 N GLY A 2 1555 1555 1.31 LINK C ALA A 3 N DLE A 4 1555 1555 1.32 LINK C DLE A 4 N ALA A 5 1555 1555 1.32 LINK C ALA A 5 N DVA A 6 1555 1555 1.33 LINK C DVA A 6 N VAL A 7 1555 1555 1.34 LINK C VAL A 7 N DVA A 8 1555 1555 1.31 LINK C DVA A 8 N TRP A 9 1555 1555 1.33 LINK C TRP A 9 N DLE A 10 1555 1555 1.32 LINK C DLE A 10 N TRP A 11 1555 1555 1.34 LINK C TRP A 11 N DLE A 12 1555 1555 1.33 LINK C DLE A 12 N TRP A 13 1555 1555 1.34 LINK C TRP A 13 N DLE A 14 1555 1555 1.35 LINK C DLE A 14 N TRP A 15 1555 1555 1.32 LINK C TRP A 15 N BETA A 16 1555 1555 1.36 LINK C TRP A 15 N CETA A 16 1555 1555 1.32 LINK C TRP A 15 N AETA A 16 1555 1555 1.33 LINK C AFVA B 1 N GLY B 2 1555 1555 1.34 LINK C BQIL B 1 N GLY B 2 1555 1555 1.34 LINK C ALA B 3 N DLE B 4 1555 1555 1.31 LINK C DLE B 4 N ALA B 5 1555 1555 1.33 LINK C ALA B 5 N DVA B 6 1555 1555 1.31 LINK C DVA B 6 N VAL B 7 1555 1555 1.35 LINK C VAL B 7 N DVA B 8 1555 1555 1.32 LINK C DVA B 8 N TRP B 9 1555 1555 1.35 LINK C TRP B 9 N DLE B 10 1555 1555 1.33 LINK C DLE B 10 N BTRP B 11 1555 1555 1.33 LINK C DLE B 10 N ATRP B 11 1555 1555 1.33 LINK C BTRP B 11 N DLE B 12 1555 1555 1.32 LINK C ATRP B 11 N DLE B 12 1555 1555 1.33 LINK C DLE B 12 N TRP B 13 1555 1555 1.32 LINK C TRP B 13 N DLE B 14 1555 1555 1.32 LINK C DLE B 14 N TRP B 15 1555 1555 1.32 LINK C TRP B 15 N ETA B 16 1555 1555 1.31 SITE 1 AC1 8 VAL A 7 DVA A 8 TRP A 9 TRP A 15 SITE 2 AC1 8 POL A 506 DVA B 8 DLE B 12 POL B 501 SITE 1 AC2 7 TRP A 9 DLE A 10 TRP A 13 POL A 507 SITE 2 AC2 7 POL A 508 POL A 509 GLY B 2 SITE 1 AC3 10 DLE A 4 TRP A 9 TRP A 15 ETA A 16 SITE 2 AC3 10 POL A 502 TRP B 13 DLE B 14 ETA B 16 SITE 3 AC3 10 POL B 501 POL B 505 SITE 1 AC4 5 DLE A 4 TRP A 9 DLE A 10 TRP A 13 SITE 2 AC4 5 POL A 503 SITE 1 AC5 5 GLY A 2 TRP A 9 POL A 503 POL A 509 SITE 2 AC5 5 TRP B 11 SITE 1 AC6 4 GLY A 2 POL A 503 POL A 508 GLY B 2 SITE 1 AC7 6 ETA A 16 POL A 502 POL A 506 DLE B 4 SITE 2 AC7 6 TRP B 13 POL B 510 SITE 1 AC8 5 ETA A 16 ALA B 3 DLE B 4 TRP B 15 SITE 2 AC8 5 POL B 510 SITE 1 AC9 8 DLE A 4 ALA A 5 TRP A 11 ETA A 16 SITE 2 AC9 8 POL A 506 TRP B 9 TRP B 13 TRP B 15 SITE 1 BC1 5 ETA A 16 TRP B 9 TRP B 13 POL B 501 SITE 2 BC1 5 POL B 504 SITE 1 BC2 25 POL A 502 POL A 503 POL A 506 POL A 507 SITE 2 BC2 25 POL A 508 POL A 509 GLY B 2 ALA B 3 SITE 3 BC2 25 DLE B 4 ALA B 5 DVA B 6 VAL B 7 SITE 4 BC2 25 DVA B 8 TRP B 9 DLE B 10 TRP B 11 SITE 5 BC2 25 DLE B 12 TRP B 13 DLE B 14 TRP B 15 SITE 6 BC2 25 ETA B 16 POL B 501 POL B 504 POL B 505 SITE 7 BC2 25 POL B 510 SITE 1 BC3 25 GLY A 2 ALA A 3 DLE A 4 ALA A 5 SITE 2 BC3 25 DVA A 6 VAL A 7 DVA A 8 TRP A 9 SITE 3 BC3 25 DLE A 10 TRP A 11 DLE A 12 TRP A 13 SITE 4 BC3 25 DLE A 14 TRP A 15 ETA A 16 POL A 502 SITE 5 BC3 25 POL A 503 POL A 506 POL A 507 POL A 508 SITE 6 BC3 25 POL A 509 POL B 501 POL B 504 POL B 505 SITE 7 BC3 25 POL B 510 CRYST1 32.434 32.461 24.148 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.030806 0.000000 0.00000 SCALE3 0.000000 0.000000 0.041411 0.00000 MTRIX1 1 0.847240 0.150640 0.509400 -8.19000 1 MTRIX2 1 0.151640 -0.987630 0.039850 65.16000 1 MTRIX3 1 0.509100 0.043480 -0.859610 10.19000 1 HETATM 1 C AFVA A 1 25.624 20.401 10.883 0.70 7.76 C ANISOU 1 C AFVA A 1 996 784 1168 51 -57 60 C HETATM 2 N AFVA A 1 24.720 18.982 9.180 0.70 7.96 N ANISOU 2 N AFVA A 1 955 795 1273 71 27 -4 N HETATM 3 O AFVA A 1 24.856 21.296 10.611 0.70 10.13 O ANISOU 3 O AFVA A 1 1557 910 1383 316 -284 -33 O HETATM 4 CA AFVA A 1 25.941 19.320 9.854 0.70 8.39 C ANISOU 4 CA AFVA A 1 1012 921 1256 60 33 -25 C HETATM 5 CB AFVA A 1 27.016 19.811 8.821 0.70 8.82 C ANISOU 5 CB AFVA A 1 982 1050 1318 -8 28 -121 C HETATM 6 CG1AFVA A 1 27.410 18.682 7.870 0.70 11.25 C ANISOU 6 CG1AFVA A 1 1604 1336 1336 -146 337 -296 C HETATM 7 CG2AFVA A 1 26.701 21.074 8.046 0.70 10.92 C ANISOU 7 CG2AFVA A 1 1360 1274 1515 -192 165 189 C HETATM 8 H AFVA A 1 24.222 19.645 8.883 0.70 9.55 H ANISOU 8 H AFVA A 1 1210 1210 1210 0 0 0 H HETATM 9 HA AFVA A 1 26.288 18.510 10.327 0.70 10.07 H ANISOU 9 HA AFVA A 1 1275 1275 1275 0 0 0 H HETATM 10 HB AFVA A 1 27.835 20.016 9.356 0.70 10.58 H ANISOU 10 HB AFVA A 1 1340 1340 1340 0 0 0 H HETATM 11 HG11AFVA A 1 26.824 17.911 8.018 0.70 16.88 H ANISOU 11 HG11AFVA A 1 2138 2138 2138 0 0 0 H HETATM 12 HG12AFVA A 1 27.320 18.988 6.944 0.70 16.88 H ANISOU 12 HG12AFVA A 1 2138 2138 2138 0 0 0 H HETATM 13 HG13AFVA A 1 28.340 18.422 8.039 0.70 16.88 H ANISOU 13 HG13AFVA A 1 2138 2138 2138 0 0 0 H HETATM 14 O1 AFVA A 1 24.903 16.736 9.202 0.70 11.13 O ANISOU 14 O1 AFVA A 1 1075 821 2331 44 13 23 O HETATM 15 HG21AFVA A 1 25.793 21.372 8.262 0.70 16.37 H ANISOU 15 HG21AFVA A 1 2073 2073 2073 0 0 0 H HETATM 16 CN AFVA A 1 24.284 17.742 8.969 0.70 9.32 C ANISOU 16 CN AFVA A 1 1058 817 1666 -48 0 121 C HETATM 17 HG22AFVA A 1 27.341 21.775 8.289 0.70 16.37 H ANISOU 17 HG22AFVA A 1 2073 2073 2073 0 0 0 H HETATM 18 HG23AFVA A 1 26.765 20.892 7.085 0.70 16.37 H ANISOU 18 HG23AFVA A 1 2073 2073 2073 0 0 0 H HETATM 19 HN AFVA A 1 23.412 17.643 8.605 0.70 11.19 H ANISOU 19 HN AFVA A 1 1417 1417 1417 0 0 0 H HETATM 20 C BQIL A 1 25.624 20.401 10.883 0.30 7.76 C ANISOU 20 C BQIL A 1 996 784 1168 51 -57 60 C HETATM 21 N BQIL A 1 24.720 18.982 9.180 0.30 7.96 N ANISOU 21 N BQIL A 1 955 795 1273 71 27 -4 N HETATM 22 O BQIL A 1 24.856 21.296 10.611 0.30 10.13 O ANISOU 22 O BQIL A 1 1557 910 1383 316 -284 -33 O HETATM 23 CA BQIL A 1 25.941 19.320 9.854 0.30 8.39 C ANISOU 23 CA BQIL A 1 1012 921 1256 60 33 -25 C HETATM 24 CB BQIL A 1 27.186 19.900 9.132 0.30 9.99 C ANISOU 24 CB BQIL A 1 1052 1173 1570 -36 124 -81 C HETATM 25 CD1BQIL A 1 28.468 19.265 7.123 0.30 12.62 C ANISOU 25 CD1BQIL A 1 1121 2226 1447 -9 105 -34 C HETATM 26 CG1BQIL A 1 27.539 18.736 8.186 0.30 10.84 C ANISOU 26 CG1BQIL A 1 1154 1501 1466 100 186 -156 C HETATM 27 CG2BQIL A 1 28.430 20.338 9.900 0.30 11.54 C ANISOU 27 CG2BQIL A 1 978 1331 2074 12 57 -220 C HETATM 28 CN BQIL A 1 24.284 17.742 8.969 0.30 9.32 C ANISOU 28 CN BQIL A 1 1058 817 1666 -48 0 121 C HETATM 29 O1 BQIL A 1 24.903 16.736 9.202 0.30 11.13 O ANISOU 29 O1 BQIL A 1 1075 821 2331 44 13 23 O HETATM 30 H BQIL A 1 24.222 19.645 8.883 0.30 9.55 H ANISOU 30 H BQIL A 1 1210 1210 1210 0 0 0 H HETATM 31 HA BQIL A 1 26.288 18.510 10.327 0.30 10.07 H ANISOU 31 HA BQIL A 1 1275 1275 1275 0 0 0 H HETATM 32 HB BQIL A 1 26.885 20.671 8.571 0.30 11.99 H ANISOU 32 HB BQIL A 1 1519 1519 1519 0 0 0 H HETATM 33 HD11BQIL A 1 28.025 19.990 6.633 0.30 18.93 H ANISOU 33 HD11BQIL A 1 2398 2398 2398 0 0 0 H HETATM 34 HD12BQIL A 1 29.284 19.607 7.543 0.30 18.93 H ANISOU 34 HD12BQIL A 1 2398 2398 2398 0 0 0 H HETATM 35 HD13BQIL A 1 28.698 18.544 6.501 0.30 18.93 H ANISOU 35 HD13BQIL A 1 2398 2398 2398 0 0 0 H HETATM 36 HG12BQIL A 1 26.717 18.375 7.770 0.30 13.01 H ANISOU 36 HG12BQIL A 1 1648 1648 1648 0 0 0 H HETATM 37 HG13BQIL A 1 27.981 18.009 8.691 0.30 13.01 H ANISOU 37 HG13BQIL A 1 1648 1648 1648 0 0 0 H HETATM 38 HG21BQIL A 1 28.746 19.598 10.460 0.30 17.30 H ANISOU 38 HG21BQIL A 1 2191 2191 2191 0 0 0 H HETATM 39 HG22BQIL A 1 29.133 20.591 9.266 0.30 17.30 H ANISOU 39 HG22BQIL A 1 2191 2191 2191 0 0 0 H HETATM 40 HG23BQIL A 1 28.210 21.106 10.467 0.30 17.30 H ANISOU 40 HG23BQIL A 1 2191 2191 2191 0 0 0 H HETATM 41 HN BQIL A 1 23.412 17.643 8.605 0.30 11.19 H ANISOU 41 HN BQIL A 1 1417 1417 1417 0 0 0 H