data_1AL5 # _entry.id 1AL5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AL5 pdb_00001al5 10.2210/pdb1al5/pdb WWPDB D_1000170952 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-12-17 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-14 5 'Structure model' 1 4 2021-11-03 6 'Structure model' 1 5 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Source and taxonomy' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' ndb_struct_na_base_pair 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_entity_src_syn 4 4 'Structure model' pdbx_nmr_software 5 4 'Structure model' pdbx_nmr_spectrometer 6 4 'Structure model' pdbx_struct_assembly 7 4 'Structure model' pdbx_struct_assembly_prop 8 4 'Structure model' pdbx_struct_oper_list 9 5 'Structure model' database_2 10 5 'Structure model' pdbx_nmr_software 11 5 'Structure model' pdbx_nmr_spectrometer 12 6 'Structure model' chem_comp_atom 13 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_ndb_struct_na_base_pair.opening' 2 4 'Structure model' '_pdbx_database_status.process_site' 3 4 'Structure model' '_pdbx_nmr_software.authors' 4 4 'Structure model' '_pdbx_nmr_spectrometer.field_strength' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_pdbx_nmr_software.authors' 8 5 'Structure model' '_pdbx_nmr_software.classification' 9 5 'Structure model' '_pdbx_nmr_software.name' 10 5 'Structure model' '_pdbx_nmr_spectrometer.manufacturer' 11 5 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AL5 _pdbx_database_status.recvd_initial_deposition_date 1997-06-11 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Conte, M.R.' 1 'Conn, G.L.' 2 'Brown, T.' 3 'Lane, A.N.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Conformational properties and thermodynamics of the RNA duplex r(CGCAAAUUUGCG)2: comparison with the DNA analogue d(CGCAAATTTGCG)2.' 'Nucleic Acids Res.' 25 2627 2634 1997 NARHAD UK 0305-1048 0389 ? 9185574 10.1093/nar/25.13.2627 1 'Hydration of the RNA Duplex R(Cgcaaauuugcg)2 Determined by NMR' 'Nucleic Acids Res.' 24 3693 ? 1996 NARHAD UK 0305-1048 0389 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Conte, M.R.' 1 ? primary 'Conn, G.L.' 2 ? primary 'Brown, T.' 3 ? primary 'Lane, A.N.' 4 ? 1 'Conte, M.R.' 5 ? 1 'Conn, G.L.' 6 ? 1 'Brown, T.' 7 ? 1 'Lane, A.N.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*CP*GP*CP*AP*AP*AP*UP*UP*UP*GP*CP*G)-3') ; _entity.formula_weight 3812.320 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'A-TRACT RNA' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGCAAAUUUGCG _entity_poly.pdbx_seq_one_letter_code_can CGCAAAUUUGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 A n 1 5 A n 1 6 A n 1 7 U n 1 8 U n 1 9 U n 1 10 G n 1 11 C n 1 12 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ' synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 G 2 2 2 G G B . n B 1 3 C 3 3 3 C C B . n B 1 4 A 4 4 4 A A B . n B 1 5 A 5 5 5 A A B . n B 1 6 A 6 6 6 A A B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 U 9 9 9 U U B . n B 1 10 G 10 10 10 G G B . n B 1 11 C 11 11 11 C C B . n B 1 12 G 12 12 12 G G B . n # _cell.entry_id 1AL5 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AL5 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AL5 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1AL5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AL5 _struct.title 'A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AL5 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA DUPLEX, RIBONUCLEIC ACID, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1AL5 _struct_ref.pdbx_db_accession 1AL5 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AL5 A 1 ? 12 ? 1AL5 1 ? 12 ? 1 12 2 1 1AL5 B 1 ? 12 ? 1AL5 1 ? 12 ? 1 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1170 ? 1 MORE -3 ? 1 'SSA (A^2)' 4610 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 1 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 1 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 1 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 3 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 3 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 3 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 9 N3 ? ? A A 4 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 9 O4 ? ? A A 4 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 5 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 5 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 6 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 6 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 6 N1 ? ? A U 7 B A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 6 N6 ? ? A U 7 B A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 8 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 8 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 9 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 9 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 10 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 10 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 10 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 12 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 12 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 12 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.92 108.50 4.42 0.70 N 2 1 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.41 108.50 4.91 0.70 N 3 1 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.09 108.50 4.59 0.70 N 4 1 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 112.71 108.50 4.21 0.70 N 5 1 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.16 108.50 4.66 0.70 N 6 1 "O4'" B U 7 ? ? "C1'" B U 7 ? ? N1 B U 7 ? ? 112.84 108.50 4.34 0.70 N 7 1 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.00 108.50 4.50 0.70 N 8 1 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 112.87 108.50 4.37 0.70 N 9 2 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.40 108.50 4.90 0.70 N 10 2 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.23 108.50 4.73 0.70 N 11 2 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.37 108.50 4.87 0.70 N 12 2 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 113.15 108.50 4.65 0.70 N 13 2 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.20 108.50 4.70 0.70 N 14 2 "O4'" B U 7 ? ? "C1'" B U 7 ? ? N1 B U 7 ? ? 112.97 108.50 4.47 0.70 N 15 2 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.25 108.50 4.75 0.70 N 16 3 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.20 108.50 4.70 0.70 N 17 3 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.23 108.50 4.73 0.70 N 18 3 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.13 108.50 4.63 0.70 N 19 3 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 112.93 108.50 4.43 0.70 N 20 3 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.03 108.50 4.53 0.70 N 21 3 "O4'" B U 7 ? ? "C1'" B U 7 ? ? N1 B U 7 ? ? 112.86 108.50 4.36 0.70 N 22 3 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.02 108.50 4.52 0.70 N 23 4 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.00 108.50 4.50 0.70 N 24 4 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.34 108.50 4.84 0.70 N 25 4 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.38 108.50 4.88 0.70 N 26 4 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 112.93 108.50 4.43 0.70 N 27 4 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.08 108.50 4.58 0.70 N 28 4 "O4'" B U 7 ? ? "C1'" B U 7 ? ? N1 B U 7 ? ? 112.77 108.50 4.27 0.70 N 29 4 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.88 108.50 4.38 0.70 N 30 5 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.04 108.50 4.54 0.70 N 31 5 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 112.86 108.50 4.36 0.70 N 32 5 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.24 108.50 4.74 0.70 N 33 5 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.84 108.50 4.34 0.70 N 34 6 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.20 108.50 4.70 0.70 N 35 6 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 112.85 108.50 4.35 0.70 N 36 6 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.26 108.50 4.76 0.70 N 37 6 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.92 108.50 4.42 0.70 N 38 7 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.93 108.50 4.43 0.70 N 39 7 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 113.15 108.50 4.65 0.70 N 40 7 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.70 108.50 5.20 0.70 N 41 7 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.03 108.50 4.53 0.70 N 42 8 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.93 108.50 4.43 0.70 N 43 8 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 113.15 108.50 4.65 0.70 N 44 8 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.70 108.50 5.20 0.70 N 45 8 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.03 108.50 4.53 0.70 N 46 9 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.10 108.50 4.60 0.70 N 47 9 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 112.90 108.50 4.40 0.70 N 48 9 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.79 108.50 4.29 0.70 N 49 10 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.17 108.50 4.67 0.70 N 50 10 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 112.93 108.50 4.43 0.70 N 51 10 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.93 108.50 4.43 0.70 N 52 11 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.79 108.50 4.29 0.70 N 53 11 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 113.04 108.50 4.54 0.70 N 54 11 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.19 108.50 4.69 0.70 N 55 11 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 112.78 108.50 4.28 0.70 N 56 12 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.18 108.50 4.68 0.70 N 57 12 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 113.08 108.50 4.58 0.70 N 58 12 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 112.98 108.50 4.48 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 8 ? ? 0.083 'SIDE CHAIN' 2 1 G A 10 ? ? 0.071 'SIDE CHAIN' 3 1 G B 10 ? ? 0.074 'SIDE CHAIN' 4 2 G A 2 ? ? 0.066 'SIDE CHAIN' 5 2 A A 6 ? ? 0.063 'SIDE CHAIN' 6 2 G A 10 ? ? 0.072 'SIDE CHAIN' 7 2 G B 2 ? ? 0.077 'SIDE CHAIN' 8 2 G B 10 ? ? 0.101 'SIDE CHAIN' 9 3 G A 10 ? ? 0.074 'SIDE CHAIN' 10 3 G B 2 ? ? 0.075 'SIDE CHAIN' 11 3 G B 10 ? ? 0.084 'SIDE CHAIN' 12 4 G A 2 ? ? 0.074 'SIDE CHAIN' 13 4 G A 10 ? ? 0.088 'SIDE CHAIN' 14 4 G B 10 ? ? 0.087 'SIDE CHAIN' 15 5 G A 2 ? ? 0.076 'SIDE CHAIN' 16 5 G A 10 ? ? 0.084 'SIDE CHAIN' 17 5 G B 2 ? ? 0.076 'SIDE CHAIN' 18 5 G B 10 ? ? 0.082 'SIDE CHAIN' 19 6 A A 4 ? ? 0.062 'SIDE CHAIN' 20 6 G A 10 ? ? 0.069 'SIDE CHAIN' 21 6 G B 10 ? ? 0.079 'SIDE CHAIN' 22 7 G A 10 ? ? 0.061 'SIDE CHAIN' 23 7 G B 2 ? ? 0.069 'SIDE CHAIN' 24 7 G B 10 ? ? 0.077 'SIDE CHAIN' 25 8 G A 10 ? ? 0.061 'SIDE CHAIN' 26 8 G B 2 ? ? 0.069 'SIDE CHAIN' 27 8 G B 10 ? ? 0.077 'SIDE CHAIN' 28 9 G A 2 ? ? 0.069 'SIDE CHAIN' 29 9 G A 10 ? ? 0.084 'SIDE CHAIN' 30 9 G B 2 ? ? 0.071 'SIDE CHAIN' 31 9 U B 9 ? ? 0.066 'SIDE CHAIN' 32 9 G B 10 ? ? 0.078 'SIDE CHAIN' 33 10 G A 10 ? ? 0.086 'SIDE CHAIN' 34 10 G B 2 ? ? 0.069 'SIDE CHAIN' 35 10 G B 10 ? ? 0.079 'SIDE CHAIN' 36 11 G A 2 ? ? 0.071 'SIDE CHAIN' 37 11 G A 10 ? ? 0.083 'SIDE CHAIN' 38 11 G B 2 ? ? 0.067 'SIDE CHAIN' 39 11 A B 4 ? ? 0.060 'SIDE CHAIN' 40 11 G B 10 ? ? 0.076 'SIDE CHAIN' 41 12 G A 2 ? ? 0.075 'SIDE CHAIN' 42 12 G A 10 ? ? 0.084 'SIDE CHAIN' 43 12 G B 10 ? ? 0.066 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1AL5 _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 12 _pdbx_nmr_ensemble.conformer_selection_criteria 'MINIMAL RESTRAINT VIOLATIONS, LOW ENERGY, GOOD STEREOCHEMISTRY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? _pdbx_nmr_exptl_sample_conditions.pH_units ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 DQF-COSY 1 3 1 H-INADEQUATE 1 4 1 31P 1 # _pdbx_nmr_refine.entry_id 1AL5 _pdbx_nmr_refine.method 'DIRECT REFINEMENT AND RMD' _pdbx_nmr_refine.details 'SEE REFERENCES FOR DETAILS.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement Discover ? BIOSYM 1 'structure calculation' Discover ? BIOSYM 2 'structure calculation' NUCFIT ? Lane 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _ndb_struct_conf_na.entry_id 1AL5 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 12 1_555 0.101 -0.078 0.040 9.123 -26.547 -1.331 1 A_C1:G12_B A 1 ? B 12 ? 19 1 1 A G 2 1_555 B C 11 1_555 -0.400 -0.149 0.122 1.243 -22.633 -1.092 2 A_G2:C11_B A 2 ? B 11 ? 19 1 1 A C 3 1_555 B G 10 1_555 0.310 -0.111 -0.006 3.003 -24.008 -0.087 3 A_C3:G10_B A 3 ? B 10 ? 19 1 1 A A 4 1_555 B U 9 1_555 0.221 -0.012 0.240 -3.374 -13.777 -2.059 4 A_A4:U9_B A 4 ? B 9 ? 20 1 1 A A 5 1_555 B U 8 1_555 0.300 -0.016 0.340 -0.761 -16.335 -5.018 5 A_A5:U8_B A 5 ? B 8 ? 20 1 1 A A 6 1_555 B U 7 1_555 0.243 -0.027 0.332 1.294 -23.618 -4.998 6 A_A6:U7_B A 6 ? B 7 ? 20 1 1 A U 7 1_555 B A 6 1_555 0.083 -0.082 0.278 0.141 -26.807 -5.196 7 A_U7:A6_B A 7 ? B 6 ? 20 1 1 A U 8 1_555 B A 5 1_555 -0.178 -0.033 0.351 2.909 -18.841 -3.792 8 A_U8:A5_B A 8 ? B 5 ? 20 1 1 A U 9 1_555 B A 4 1_555 -0.146 -0.009 -0.061 11.190 -21.191 -3.025 9 A_U9:A4_B A 9 ? B 4 ? 20 1 1 A G 10 1_555 B C 3 1_555 -0.424 -0.149 0.049 1.713 -23.182 -0.255 10 A_G10:C3_B A 10 ? B 3 ? 19 1 1 A C 11 1_555 B G 2 1_555 0.114 -0.072 -0.090 7.140 -24.800 -0.332 11 A_C11:G2_B A 11 ? B 2 ? 19 1 1 A G 12 1_555 B C 1 1_555 -0.296 -0.109 -0.059 -7.946 -27.217 0.364 12 A_G12:C1_B A 12 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 12 1_555 A G 2 1_555 B C 11 1_555 0.059 -1.747 3.113 -1.733 21.065 29.804 -5.123 -0.287 1.572 35.839 2.948 36.399 1 AA_C1G2:C11G12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A G 2 1_555 B C 11 1_555 A C 3 1_555 B G 10 1_555 0.196 -1.598 3.078 1.426 2.105 35.212 -2.924 -0.128 2.986 3.474 -2.353 35.300 2 AA_G2C3:G10C11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A C 3 1_555 B G 10 1_555 A A 4 1_555 B U 9 1_555 0.093 -1.895 3.157 -0.762 13.673 30.170 -5.285 -0.273 2.120 24.729 1.379 33.067 3 AA_C3A4:U9G10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A A 4 1_555 B U 9 1_555 A A 5 1_555 B U 8 1_555 0.128 -1.998 3.041 1.641 0.233 31.595 -3.705 0.047 3.029 0.428 -3.012 31.637 4 AA_A4A5:U8U9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A A 5 1_555 B U 8 1_555 A A 6 1_555 B U 7 1_555 -0.201 -2.200 3.057 -0.135 3.517 28.969 -5.053 0.373 2.777 6.998 0.268 29.178 5 AA_A5A6:U7U8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A A 6 1_555 B U 7 1_555 A U 7 1_555 B A 6 1_555 -0.126 -1.978 3.122 -0.077 -0.353 32.178 -3.508 0.213 3.143 -0.637 0.139 32.180 6 AA_A6U7:A6U7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A U 7 1_555 B A 6 1_555 A U 8 1_555 B A 5 1_555 -0.018 -1.816 3.057 -1.201 3.564 30.436 -4.067 -0.180 2.830 6.756 2.276 30.662 7 AA_U7U8:A5A6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A U 8 1_555 B A 5 1_555 A U 9 1_555 B A 4 1_555 -0.089 -1.397 2.913 1.410 1.204 31.361 -2.780 0.398 2.852 2.224 -2.605 31.414 8 AA_U8U9:A4A5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A U 9 1_555 B A 4 1_555 A G 10 1_555 B C 3 1_555 0.126 -1.646 3.236 -2.476 18.621 30.140 -5.053 -0.520 1.913 32.181 4.279 35.399 9 AA_U9G10:C3A4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A G 10 1_555 B C 3 1_555 A C 11 1_555 B G 2 1_555 -0.108 -1.496 3.024 -0.184 1.330 34.031 -2.748 0.157 2.966 2.272 0.315 34.056 10 AA_G10C11:G2C3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A C 11 1_555 B G 2 1_555 A G 12 1_555 B C 1 1_555 -0.006 -1.734 3.317 -0.752 23.594 29.030 -5.348 -0.075 1.529 39.800 1.268 37.255 11 AA_C11G12:C1G2_BB A 11 ? B 2 ? A 12 ? B 1 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AM Bruker 400 ? 2 UNITYPLUS Varian 500 ? 3 UNITY Varian 600 ? # _atom_sites.entry_id 1AL5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_