data_1AL9 # _entry.id 1AL9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AL9 pdb_00001al9 10.2210/pdb1al9/pdb WWPDB D_1000170956 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-09-17 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AL9 _pdbx_database_status.recvd_initial_deposition_date 1997-06-12 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1AMD _pdbx_database_related.details 'MINIMIZED AVERAGE STRUCTURE' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Robinson, H.' 1 'Wang, A.H.-J.' 2 # _citation.id primary _citation.title 'Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy.' _citation.journal_abbrev Biochemistry _citation.journal_volume 36 _citation.page_first 8663 _citation.page_last 8670 _citation.year 1997 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9289011 _citation.pdbx_database_id_DOI 10.1021/bi970842j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Robinson, H.' 1 ? primary 'Priebe, W.' 2 ? primary 'Chaires, J.B.' 3 ? primary 'Wang, A.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') ; 2426.617 2 ? ? ? 'WP631 IS AN INTERCALATOR' 2 non-polymer syn '4-METHYLBENZYL-N-BIS[DAUNOMYCIN]' 1159.189 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(DG)(DT)(DA)(DC)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ACGTACGT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '4-METHYLBENZYL-N-BIS[DAUNOMYCIN]' _pdbx_entity_nonpoly.comp_id BDA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BDA non-polymer . '4-METHYLBENZYL-N-BIS[DAUNOMYCIN]' WP631 'C62 H66 N2 O20 2' 1159.189 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DT 8 8 8 DT T A . n B 1 1 DA 1 9 9 DA A B . n B 1 2 DC 2 10 10 DC C B . n B 1 3 DG 3 11 11 DG G B . n B 1 4 DT 4 12 12 DT T B . n B 1 5 DA 5 13 13 DA A B . n B 1 6 DC 6 14 14 DC C B . n B 1 7 DG 7 15 15 DG G B . n B 1 8 DT 8 16 16 DT T B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id BDA _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 17 _pdbx_nonpoly_scheme.auth_seq_num 17 _pdbx_nonpoly_scheme.pdb_mon_id BDA _pdbx_nonpoly_scheme.auth_mon_id DM1 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _cell.entry_id 1AL9 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AL9 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AL9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1AL9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AL9 _struct.title ;NMR STUDY OF DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN, MINIMIZED AVERAGE STRUCTURE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AL9 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'COMPLEX (DEOXYRIBONUCLEIC ACID-DRUG), BIS-INTERCALATOR, DAUNORUBICIN, DNA, DEOXYRIBONUCLEIC ACID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1AL9 _struct_ref.pdbx_db_accession 1AL9 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AL9 A 1 ? 8 ? 1AL9 1 ? 8 ? 1 8 2 1 1AL9 B 1 ? 8 ? 1AL9 9 ? 16 ? 9 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 1 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 1 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 4 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 4 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 7 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 7 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 7 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 8 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 8 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BDA _struct_site.pdbx_auth_seq_id 17 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE BDA A 17' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DC A 2 ? DC A 2 . ? 1_555 ? 2 AC1 12 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 12 DT A 4 ? DT A 4 . ? 1_555 ? 4 AC1 12 DA A 5 ? DA A 5 . ? 1_555 ? 5 AC1 12 DC A 6 ? DC A 6 . ? 1_555 ? 6 AC1 12 DG A 7 ? DG A 7 . ? 1_555 ? 7 AC1 12 DC B 2 ? DC B 10 . ? 1_555 ? 8 AC1 12 DG B 3 ? DG B 11 . ? 1_555 ? 9 AC1 12 DT B 4 ? DT B 12 . ? 1_555 ? 10 AC1 12 DA B 5 ? DA B 13 . ? 1_555 ? 11 AC1 12 DC B 6 ? DC B 14 . ? 1_555 ? 12 AC1 12 DG B 7 ? DG B 15 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C5 _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 12 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C7 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 12 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.533 _pdbx_validate_rmsd_bond.bond_target_value 1.496 _pdbx_validate_rmsd_bond.bond_deviation 0.037 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? "C3'" A DA 1 ? ? 110.48 106.00 4.48 0.60 N 2 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 102.98 108.00 -5.02 0.70 N 3 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 100.75 105.90 -5.15 0.80 N 4 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.10 108.30 4.80 0.30 N 5 1 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 109.63 106.00 3.63 0.60 N 6 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.89 106.40 -2.51 0.40 N 7 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.64 108.30 4.34 0.30 N 8 1 "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? 97.83 102.20 -4.37 0.70 N 9 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.59 108.30 2.29 0.30 N 10 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.93 108.30 2.63 0.30 N 11 1 "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 111.26 106.00 5.26 0.60 N 12 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.65 122.90 -5.25 0.60 N 13 1 "O4'" B DA 9 ? ? "C4'" B DA 9 ? ? "C3'" B DA 9 ? ? 110.52 106.00 4.52 0.60 N 14 1 "O4'" B DA 9 ? ? "C1'" B DA 9 ? ? N9 B DA 9 ? ? 103.05 108.00 -4.95 0.70 N 15 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? "C2'" B DC 10 ? ? 100.76 105.90 -5.14 0.80 N 16 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 113.15 108.30 4.85 0.30 N 17 1 "O4'" B DG 11 ? ? "C4'" B DG 11 ? ? "C3'" B DG 11 ? ? 109.72 106.00 3.72 0.60 N 18 1 C8 B DG 11 ? ? N9 B DG 11 ? ? C4 B DG 11 ? ? 103.92 106.40 -2.48 0.40 N 19 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 112.39 108.30 4.09 0.30 N 20 1 "C4'" B DA 13 ? ? "C3'" B DA 13 ? ? "C2'" B DA 13 ? ? 97.76 102.20 -4.44 0.70 N 21 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 110.61 108.30 2.31 0.30 N 22 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.92 108.30 2.62 0.30 N 23 1 "O4'" B DG 15 ? ? "C4'" B DG 15 ? ? "C3'" B DG 15 ? ? 110.85 106.00 4.85 0.60 N 24 1 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.11 122.90 -3.79 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 4 ? ? 0.085 'SIDE CHAIN' 2 1 DC A 6 ? ? 0.092 'SIDE CHAIN' 3 1 DT B 12 ? ? 0.085 'SIDE CHAIN' 4 1 DC B 14 ? ? 0.092 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1AL9 _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'MINIMIZED AVERAGE' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 275 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 TOCSY 1 # _pdbx_nmr_details.entry_id 1AL9 _pdbx_nmr_details.text 'IONIC_STRENGTH: 20 MM PRESSURE: NULL SOLVENT SYSTEM: H2O' # _pdbx_nmr_refine.entry_id 1AL9 _pdbx_nmr_refine.method NOE-RMD _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR ? BRUNGER 1 'structure solution' X-PLOR ? ? 2 'structure solution' SPEDREF ? ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BDA C1 C Y N 1 BDA C2 C Y N 2 BDA C3 C Y N 3 BDA C4 C Y N 4 BDA O4 O N N 5 BDA C5 C Y N 6 BDA C6 C N N 7 BDA O6 O N N 8 BDA C7 C Y N 9 BDA C8 C Y N 10 BDA O8 O N N 11 BDA C9 C Y N 12 BDA C10 C N S 13 BDA O10 O N N 14 BDA C11 C N N 15 BDA C12 C N S 16 BDA O12 O N N 17 BDA C13 C N N 18 BDA O13 O N N 19 BDA C14 C N N 20 BDA C15 C N N 21 BDA C16 C Y N 22 BDA C17 C Y N 23 BDA O17 O N N 24 BDA C18 C Y N 25 BDA C19 C N N 26 BDA O19 O N N 27 BDA C20 C Y N 28 BDA C21 C N N 29 BDA "C1'" C N R 30 BDA "C2'" C N N 31 BDA "C3'" C N S 32 BDA "N3'" N N N 33 BDA "C4'" C N S 34 BDA "O4'" O N N 35 BDA "C5'" C N S 36 BDA "O5'" O N N 37 BDA "C6'" C N N 38 BDA "C7'" C N N 39 BDA "C8'" C Y N 40 BDA C9A C Y N 41 BDA C9B C Y N 42 BDA C1B C Y N 43 BDA C2B C Y N 44 BDA C3B C Y N 45 BDA C4B C Y N 46 BDA O4B O N N 47 BDA C5B C Y N 48 BDA C6B C N N 49 BDA "O6'" O N N 50 BDA C7B C Y N 51 BDA C8B C Y N 52 BDA "O8'" O N N 53 BDA "C9'" C Y N 54 BDA "CA'" C N S 55 BDA "OA'" O N N 56 BDA "CB'" C N N 57 BDA "CC'" C N S 58 BDA "OC'" O N N 59 BDA "CD'" C N N 60 BDA "OD'" O N N 61 BDA "CE'" C N N 62 BDA "CF'" C N N 63 BDA "CG'" C Y N 64 BDA "CH'" C Y N 65 BDA "OH'" O N N 66 BDA "CI'" C Y N 67 BDA "CJ'" C N N 68 BDA "OJ'" O N N 69 BDA "CK'" C Y N 70 BDA "CL'" C N N 71 BDA C1D C N R 72 BDA C2D C N N 73 BDA C3D C N S 74 BDA N3D N N N 75 BDA C4D C N S 76 BDA O4D O N N 77 BDA C5D C N S 78 BDA O5D O N N 79 BDA C6D C N N 80 BDA C7D C N N 81 BDA C8D C Y N 82 BDA C1A C Y N 83 BDA C1C C Y N 84 BDA H1 H N N 85 BDA H2 H N N 86 BDA H3 H N N 87 BDA HO8 H N N 88 BDA H10 H N N 89 BDA H111 H N N 90 BDA H112 H N N 91 BDA H12 H N N 92 BDA H141 H N N 93 BDA H142 H N N 94 BDA H143 H N N 95 BDA H151 H N N 96 BDA H152 H N N 97 BDA H17 H N N 98 BDA H211 H N N 99 BDA H212 H N N 100 BDA H213 H N N 101 BDA H1B H N N 102 BDA "H2'1" H N N 103 BDA "H2'2" H N N 104 BDA H3B H N N 105 BDA "HN'1" H N N 106 BDA "HN'2" H N N 107 BDA "H4'" H N N 108 BDA "HO4'" H N N 109 BDA "H5'" H N N 110 BDA "H6'1" H N N 111 BDA "H6'2" H N N 112 BDA "H6'3" H N N 113 BDA "H7'1" H N N 114 BDA "H7'2" H N N 115 BDA H9A H N N 116 BDA H9B H N N 117 BDA "H1'" H N N 118 BDA "H2'" H N N 119 BDA "H3'" H N N 120 BDA "HO8'" H N N 121 BDA "H10'" H N N 122 BDA "HL'1" H N N 123 BDA "HL'2" H N N 124 BDA "H12'" H N N 125 BDA "HK'1" H N N 126 BDA "HK'2" H N N 127 BDA "HK'3" H N N 128 BDA "HJ'1" H N N 129 BDA "HJ'2" H N N 130 BDA "H17'" H N N 131 BDA "HI'1" H N N 132 BDA "HI'2" H N N 133 BDA "HI'3" H N N 134 BDA H1D H N N 135 BDA H2B H N N 136 BDA H2D H N N 137 BDA H3D H N N 138 BDA HNB H N N 139 BDA HND H N N 140 BDA H4D H N N 141 BDA HO4A H N N 142 BDA H5D H N N 143 BDA H6B H N N 144 BDA H6D H N N 145 BDA H6E H N N 146 BDA H7B H N N 147 BDA H7D H N N 148 BDA "H9A'" H N N 149 BDA "H9B'" H N N 150 DA OP3 O N N 151 DA P P N N 152 DA OP1 O N N 153 DA OP2 O N N 154 DA "O5'" O N N 155 DA "C5'" C N N 156 DA "C4'" C N R 157 DA "O4'" O N N 158 DA "C3'" C N S 159 DA "O3'" O N N 160 DA "C2'" C N N 161 DA "C1'" C N R 162 DA N9 N Y N 163 DA C8 C Y N 164 DA N7 N Y N 165 DA C5 C Y N 166 DA C6 C Y N 167 DA N6 N N N 168 DA N1 N Y N 169 DA C2 C Y N 170 DA N3 N Y N 171 DA C4 C Y N 172 DA HOP3 H N N 173 DA HOP2 H N N 174 DA "H5'" H N N 175 DA "H5''" H N N 176 DA "H4'" H N N 177 DA "H3'" H N N 178 DA "HO3'" H N N 179 DA "H2'" H N N 180 DA "H2''" H N N 181 DA "H1'" H N N 182 DA H8 H N N 183 DA H61 H N N 184 DA H62 H N N 185 DA H2 H N N 186 DC OP3 O N N 187 DC P P N N 188 DC OP1 O N N 189 DC OP2 O N N 190 DC "O5'" O N N 191 DC "C5'" C N N 192 DC "C4'" C N R 193 DC "O4'" O N N 194 DC "C3'" C N S 195 DC "O3'" O N N 196 DC "C2'" C N N 197 DC "C1'" C N R 198 DC N1 N N N 199 DC C2 C N N 200 DC O2 O N N 201 DC N3 N N N 202 DC C4 C N N 203 DC N4 N N N 204 DC C5 C N N 205 DC C6 C N N 206 DC HOP3 H N N 207 DC HOP2 H N N 208 DC "H5'" H N N 209 DC "H5''" H N N 210 DC "H4'" H N N 211 DC "H3'" H N N 212 DC "HO3'" H N N 213 DC "H2'" H N N 214 DC "H2''" H N N 215 DC "H1'" H N N 216 DC H41 H N N 217 DC H42 H N N 218 DC H5 H N N 219 DC H6 H N N 220 DG OP3 O N N 221 DG P P N N 222 DG OP1 O N N 223 DG OP2 O N N 224 DG "O5'" O N N 225 DG "C5'" C N N 226 DG "C4'" C N R 227 DG "O4'" O N N 228 DG "C3'" C N S 229 DG "O3'" O N N 230 DG "C2'" C N N 231 DG "C1'" C N R 232 DG N9 N Y N 233 DG C8 C Y N 234 DG N7 N Y N 235 DG C5 C Y N 236 DG C6 C N N 237 DG O6 O N N 238 DG N1 N N N 239 DG C2 C N N 240 DG N2 N N N 241 DG N3 N N N 242 DG C4 C Y N 243 DG HOP3 H N N 244 DG HOP2 H N N 245 DG "H5'" H N N 246 DG "H5''" H N N 247 DG "H4'" H N N 248 DG "H3'" H N N 249 DG "HO3'" H N N 250 DG "H2'" H N N 251 DG "H2''" H N N 252 DG "H1'" H N N 253 DG H8 H N N 254 DG H1 H N N 255 DG H21 H N N 256 DG H22 H N N 257 DT OP3 O N N 258 DT P P N N 259 DT OP1 O N N 260 DT OP2 O N N 261 DT "O5'" O N N 262 DT "C5'" C N N 263 DT "C4'" C N R 264 DT "O4'" O N N 265 DT "C3'" C N S 266 DT "O3'" O N N 267 DT "C2'" C N N 268 DT "C1'" C N R 269 DT N1 N N N 270 DT C2 C N N 271 DT O2 O N N 272 DT N3 N N N 273 DT C4 C N N 274 DT O4 O N N 275 DT C5 C N N 276 DT C7 C N N 277 DT C6 C N N 278 DT HOP3 H N N 279 DT HOP2 H N N 280 DT "H5'" H N N 281 DT "H5''" H N N 282 DT "H4'" H N N 283 DT "H3'" H N N 284 DT "HO3'" H N N 285 DT "H2'" H N N 286 DT "H2''" H N N 287 DT "H1'" H N N 288 DT H3 H N N 289 DT H71 H N N 290 DT H72 H N N 291 DT H73 H N N 292 DT H6 H N N 293 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BDA C1 C2 doub Y N 1 BDA C1 C20 sing Y N 2 BDA C1 H1 sing N N 3 BDA C2 C3 sing Y N 4 BDA C2 H2 sing N N 5 BDA C3 C4 doub Y N 6 BDA C3 H3 sing N N 7 BDA C4 O4 sing N N 8 BDA C4 C5 sing Y N 9 BDA O4 C21 sing N N 10 BDA C5 C6 sing N N 11 BDA C5 C20 doub Y N 12 BDA C6 O6 doub N N 13 BDA C6 C7 sing N N 14 BDA C7 C8 sing Y N 15 BDA C7 C18 doub Y N 16 BDA C8 O8 sing N N 17 BDA C8 C9 doub Y N 18 BDA O8 HO8 sing N N 19 BDA C9 C10 sing N N 20 BDA C9 C16 sing Y N 21 BDA C10 O10 sing N N 22 BDA C10 C11 sing N N 23 BDA C10 H10 sing N N 24 BDA O10 "C1'" sing N N 25 BDA C11 C12 sing N N 26 BDA C11 H111 sing N N 27 BDA C11 H112 sing N N 28 BDA C12 O12 sing N N 29 BDA C12 C13 sing N N 30 BDA C12 C15 sing N N 31 BDA O12 H12 sing N N 32 BDA C13 O13 doub N N 33 BDA C13 C14 sing N N 34 BDA C14 H141 sing N N 35 BDA C14 H142 sing N N 36 BDA C14 H143 sing N N 37 BDA C15 C16 sing N N 38 BDA C15 H151 sing N N 39 BDA C15 H152 sing N N 40 BDA C16 C17 doub Y N 41 BDA C17 O17 sing N N 42 BDA C17 C18 sing Y N 43 BDA O17 H17 sing N N 44 BDA C18 C19 sing N N 45 BDA C19 O19 doub N N 46 BDA C19 C20 sing N N 47 BDA C21 H211 sing N N 48 BDA C21 H212 sing N N 49 BDA C21 H213 sing N N 50 BDA "C1'" "C2'" sing N N 51 BDA "C1'" "O5'" sing N N 52 BDA "C1'" H1B sing N N 53 BDA "C2'" "C3'" sing N N 54 BDA "C2'" "H2'1" sing N N 55 BDA "C2'" "H2'2" sing N N 56 BDA "C3'" "N3'" sing N N 57 BDA "C3'" "C4'" sing N N 58 BDA "C3'" H3B sing N N 59 BDA "N3'" "C7'" sing N N 60 BDA "N3'" "HN'1" sing N N 61 BDA "N3'" "HN'2" sing N N 62 BDA "C4'" "O4'" sing N N 63 BDA "C4'" "C5'" sing N N 64 BDA "C4'" "H4'" sing N N 65 BDA "O4'" "HO4'" sing N N 66 BDA "C5'" "O5'" sing N N 67 BDA "C5'" "C6'" sing N N 68 BDA "C5'" "H5'" sing N N 69 BDA "C6'" "H6'1" sing N N 70 BDA "C6'" "H6'2" sing N N 71 BDA "C6'" "H6'3" sing N N 72 BDA "C7'" "C8'" sing N N 73 BDA "C7'" "H7'1" sing N N 74 BDA "C7'" "H7'2" sing N N 75 BDA "C8'" C9A doub Y N 76 BDA "C8'" C9B sing Y N 77 BDA C9A C1A sing Y N 78 BDA C9A H9A sing N N 79 BDA C9B C1C doub Y N 80 BDA C9B H9B sing N N 81 BDA C1B C2B doub Y N 82 BDA C1B "CK'" sing Y N 83 BDA C1B "H1'" sing N N 84 BDA C2B C3B sing Y N 85 BDA C2B "H2'" sing N N 86 BDA C3B C4B doub Y N 87 BDA C3B "H3'" sing N N 88 BDA C4B O4B sing N N 89 BDA C4B C5B sing Y N 90 BDA O4B "CL'" sing N N 91 BDA C5B C6B sing N N 92 BDA C5B "CK'" doub Y N 93 BDA C6B "O6'" doub N N 94 BDA C6B C7B sing N N 95 BDA C7B C8B sing Y N 96 BDA C7B "CI'" doub Y N 97 BDA C8B "O8'" sing N N 98 BDA C8B "C9'" doub Y N 99 BDA "O8'" "HO8'" sing N N 100 BDA "C9'" "CA'" sing N N 101 BDA "C9'" "CG'" sing Y N 102 BDA "CA'" "OA'" sing N N 103 BDA "CA'" "CB'" sing N N 104 BDA "CA'" "H10'" sing N N 105 BDA "OA'" C1D sing N N 106 BDA "CB'" "CC'" sing N N 107 BDA "CB'" "HL'1" sing N N 108 BDA "CB'" "HL'2" sing N N 109 BDA "CC'" "OC'" sing N N 110 BDA "CC'" "CD'" sing N N 111 BDA "CC'" "CF'" sing N N 112 BDA "OC'" "H12'" sing N N 113 BDA "CD'" "OD'" doub N N 114 BDA "CD'" "CE'" sing N N 115 BDA "CE'" "HK'1" sing N N 116 BDA "CE'" "HK'2" sing N N 117 BDA "CE'" "HK'3" sing N N 118 BDA "CF'" "CG'" sing N N 119 BDA "CF'" "HJ'1" sing N N 120 BDA "CF'" "HJ'2" sing N N 121 BDA "CG'" "CH'" doub Y N 122 BDA "CH'" "OH'" sing N N 123 BDA "CH'" "CI'" sing Y N 124 BDA "OH'" "H17'" sing N N 125 BDA "CI'" "CJ'" sing N N 126 BDA "CJ'" "OJ'" doub N N 127 BDA "CJ'" "CK'" sing N N 128 BDA "CL'" "HI'1" sing N N 129 BDA "CL'" "HI'2" sing N N 130 BDA "CL'" "HI'3" sing N N 131 BDA C1D C2D sing N N 132 BDA C1D O5D sing N N 133 BDA C1D H1D sing N N 134 BDA C2D C3D sing N N 135 BDA C2D H2B sing N N 136 BDA C2D H2D sing N N 137 BDA C3D N3D sing N N 138 BDA C3D C4D sing N N 139 BDA C3D H3D sing N N 140 BDA N3D C7D sing N N 141 BDA N3D HNB sing N N 142 BDA N3D HND sing N N 143 BDA C4D O4D sing N N 144 BDA C4D C5D sing N N 145 BDA C4D H4D sing N N 146 BDA O4D HO4A sing N N 147 BDA C5D O5D sing N N 148 BDA C5D C6D sing N N 149 BDA C5D H5D sing N N 150 BDA C6D H6B sing N N 151 BDA C6D H6D sing N N 152 BDA C6D H6E sing N N 153 BDA C7D C8D sing N N 154 BDA C7D H7B sing N N 155 BDA C7D H7D sing N N 156 BDA C8D C1A doub Y N 157 BDA C8D C1C sing Y N 158 BDA C1A "H9A'" sing N N 159 BDA C1C "H9B'" sing N N 160 DA OP3 P sing N N 161 DA OP3 HOP3 sing N N 162 DA P OP1 doub N N 163 DA P OP2 sing N N 164 DA P "O5'" sing N N 165 DA OP2 HOP2 sing N N 166 DA "O5'" "C5'" sing N N 167 DA "C5'" "C4'" sing N N 168 DA "C5'" "H5'" sing N N 169 DA "C5'" "H5''" sing N N 170 DA "C4'" "O4'" sing N N 171 DA "C4'" "C3'" sing N N 172 DA "C4'" "H4'" sing N N 173 DA "O4'" "C1'" sing N N 174 DA "C3'" "O3'" sing N N 175 DA "C3'" "C2'" sing N N 176 DA "C3'" "H3'" sing N N 177 DA "O3'" "HO3'" sing N N 178 DA "C2'" "C1'" sing N N 179 DA "C2'" "H2'" sing N N 180 DA "C2'" "H2''" sing N N 181 DA "C1'" N9 sing N N 182 DA "C1'" "H1'" sing N N 183 DA N9 C8 sing Y N 184 DA N9 C4 sing Y N 185 DA C8 N7 doub Y N 186 DA C8 H8 sing N N 187 DA N7 C5 sing Y N 188 DA C5 C6 sing Y N 189 DA C5 C4 doub Y N 190 DA C6 N6 sing N N 191 DA C6 N1 doub Y N 192 DA N6 H61 sing N N 193 DA N6 H62 sing N N 194 DA N1 C2 sing Y N 195 DA C2 N3 doub Y N 196 DA C2 H2 sing N N 197 DA N3 C4 sing Y N 198 DC OP3 P sing N N 199 DC OP3 HOP3 sing N N 200 DC P OP1 doub N N 201 DC P OP2 sing N N 202 DC P "O5'" sing N N 203 DC OP2 HOP2 sing N N 204 DC "O5'" "C5'" sing N N 205 DC "C5'" "C4'" sing N N 206 DC "C5'" "H5'" sing N N 207 DC "C5'" "H5''" sing N N 208 DC "C4'" "O4'" sing N N 209 DC "C4'" "C3'" sing N N 210 DC "C4'" "H4'" sing N N 211 DC "O4'" "C1'" sing N N 212 DC "C3'" "O3'" sing N N 213 DC "C3'" "C2'" sing N N 214 DC "C3'" "H3'" sing N N 215 DC "O3'" "HO3'" sing N N 216 DC "C2'" "C1'" sing N N 217 DC "C2'" "H2'" sing N N 218 DC "C2'" "H2''" sing N N 219 DC "C1'" N1 sing N N 220 DC "C1'" "H1'" sing N N 221 DC N1 C2 sing N N 222 DC N1 C6 sing N N 223 DC C2 O2 doub N N 224 DC C2 N3 sing N N 225 DC N3 C4 doub N N 226 DC C4 N4 sing N N 227 DC C4 C5 sing N N 228 DC N4 H41 sing N N 229 DC N4 H42 sing N N 230 DC C5 C6 doub N N 231 DC C5 H5 sing N N 232 DC C6 H6 sing N N 233 DG OP3 P sing N N 234 DG OP3 HOP3 sing N N 235 DG P OP1 doub N N 236 DG P OP2 sing N N 237 DG P "O5'" sing N N 238 DG OP2 HOP2 sing N N 239 DG "O5'" "C5'" sing N N 240 DG "C5'" "C4'" sing N N 241 DG "C5'" "H5'" sing N N 242 DG "C5'" "H5''" sing N N 243 DG "C4'" "O4'" sing N N 244 DG "C4'" "C3'" sing N N 245 DG "C4'" "H4'" sing N N 246 DG "O4'" "C1'" sing N N 247 DG "C3'" "O3'" sing N N 248 DG "C3'" "C2'" sing N N 249 DG "C3'" "H3'" sing N N 250 DG "O3'" "HO3'" sing N N 251 DG "C2'" "C1'" sing N N 252 DG "C2'" "H2'" sing N N 253 DG "C2'" "H2''" sing N N 254 DG "C1'" N9 sing N N 255 DG "C1'" "H1'" sing N N 256 DG N9 C8 sing Y N 257 DG N9 C4 sing Y N 258 DG C8 N7 doub Y N 259 DG C8 H8 sing N N 260 DG N7 C5 sing Y N 261 DG C5 C6 sing N N 262 DG C5 C4 doub Y N 263 DG C6 O6 doub N N 264 DG C6 N1 sing N N 265 DG N1 C2 sing N N 266 DG N1 H1 sing N N 267 DG C2 N2 sing N N 268 DG C2 N3 doub N N 269 DG N2 H21 sing N N 270 DG N2 H22 sing N N 271 DG N3 C4 sing N N 272 DT OP3 P sing N N 273 DT OP3 HOP3 sing N N 274 DT P OP1 doub N N 275 DT P OP2 sing N N 276 DT P "O5'" sing N N 277 DT OP2 HOP2 sing N N 278 DT "O5'" "C5'" sing N N 279 DT "C5'" "C4'" sing N N 280 DT "C5'" "H5'" sing N N 281 DT "C5'" "H5''" sing N N 282 DT "C4'" "O4'" sing N N 283 DT "C4'" "C3'" sing N N 284 DT "C4'" "H4'" sing N N 285 DT "O4'" "C1'" sing N N 286 DT "C3'" "O3'" sing N N 287 DT "C3'" "C2'" sing N N 288 DT "C3'" "H3'" sing N N 289 DT "O3'" "HO3'" sing N N 290 DT "C2'" "C1'" sing N N 291 DT "C2'" "H2'" sing N N 292 DT "C2'" "H2''" sing N N 293 DT "C1'" N1 sing N N 294 DT "C1'" "H1'" sing N N 295 DT N1 C2 sing N N 296 DT N1 C6 sing N N 297 DT C2 O2 doub N N 298 DT C2 N3 sing N N 299 DT N3 C4 sing N N 300 DT N3 H3 sing N N 301 DT C4 O4 doub N N 302 DT C4 C5 sing N N 303 DT C5 C7 sing N N 304 DT C5 C6 doub N N 305 DT C7 H71 sing N N 306 DT C7 H72 sing N N 307 DT C7 H73 sing N N 308 DT C6 H6 sing N N 309 # _ndb_struct_conf_na.entry_id 1AL9 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 8 1_555 0.255 -0.022 0.453 5.149 3.767 8.773 1 A_DA1:DT16_B A 1 ? B 16 ? 20 1 1 A DC 2 1_555 B DG 7 1_555 0.587 -0.276 -0.035 13.971 -6.261 -6.375 2 A_DC2:DG15_B A 2 ? B 15 ? 19 1 1 A DG 3 1_555 B DC 6 1_555 -0.482 -0.124 -0.324 -18.129 9.481 4.370 3 A_DG3:DC14_B A 3 ? B 14 ? 19 1 1 A DT 4 1_555 B DA 5 1_555 -0.083 -0.067 0.312 -6.360 -11.052 -1.813 4 A_DT4:DA13_B A 4 ? B 13 ? 20 1 1 A DA 5 1_555 B DT 4 1_555 0.086 -0.074 0.320 6.429 -11.165 -1.893 5 A_DA5:DT12_B A 5 ? B 12 ? 20 1 1 A DC 6 1_555 B DG 3 1_555 0.483 -0.133 -0.322 18.184 9.451 4.374 6 A_DC6:DG11_B A 6 ? B 11 ? 19 1 1 A DG 7 1_555 B DC 2 1_555 -0.600 -0.286 -0.033 -13.983 -6.332 -6.295 7 A_DG7:DC10_B A 7 ? B 10 ? 19 1 1 A DT 8 1_555 B DA 1 1_555 -0.268 -0.021 0.459 -5.284 3.881 8.955 8 A_DT8:DA9_B A 8 ? B 9 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 8 1_555 A DC 2 1_555 B DG 7 1_555 -0.191 -0.320 3.105 5.499 -5.668 29.907 0.448 1.375 3.031 -10.749 -10.428 30.909 1 AA_DA1DC2:DG15DT16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A DC 2 1_555 B DG 7 1_555 A DG 3 1_555 B DC 6 1_555 1.037 0.611 6.947 2.263 -4.715 35.292 2.448 -0.997 6.862 -7.724 -3.707 35.666 2 AA_DC2DG3:DC14DG15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A DG 3 1_555 B DC 6 1_555 A DT 4 1_555 B DA 5 1_555 -0.910 -0.367 2.980 -4.904 -1.150 27.543 -0.504 0.792 3.105 -2.390 10.191 27.991 3 AA_DG3DT4:DA13DC14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A DT 4 1_555 B DA 5 1_555 A DA 5 1_555 B DT 4 1_555 -0.002 0.979 3.464 -0.103 10.217 34.487 -0.024 -0.013 3.600 16.783 0.170 35.924 4 AA_DT4DA5:DT12DA13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DA 5 1_555 B DT 4 1_555 A DC 6 1_555 B DG 3 1_555 0.911 -0.368 2.981 4.985 -1.208 27.558 -0.492 -0.775 3.107 -2.508 -10.351 28.023 5 AA_DA5DC6:DG11DT12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A DC 6 1_555 B DG 3 1_555 A DG 7 1_555 B DC 2 1_555 -1.036 0.611 6.948 -2.267 -4.722 35.318 2.448 0.994 6.863 -7.730 3.711 35.692 6 AA_DC6DG7:DC10DG11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A DG 7 1_555 B DC 2 1_555 A DT 8 1_555 B DA 1 1_555 0.191 -0.320 3.106 -5.586 -5.593 29.964 0.431 -1.388 3.031 -10.588 10.574 30.966 7 AA_DG7DT8:DA9DC10_BB A 7 ? B 10 ? A 8 ? B 9 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'INOVA 750' _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 750 # _atom_sites.entry_id 1AL9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_