HEADER HYDROLASE (PHOSPHORIC MONOESTER) 23-AUG-94 1ALH TITLE KINETICS AND CRYSTAL STRUCTURE OF A MUTANT E. COLI ALKALINE TITLE 2 PHOSPHATASE (ASP-369-->ASN): A MECHANISM INVOLVING ONE ZINC PER TITLE 3 ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 CELL_LINE: SM547; SOURCE 5 GENE: PHOA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SM547; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEK209; SOURCE 10 EXPRESSION_SYSTEM_GENE: PHOA KEYWDS HYDROLASE (PHOSPHORIC MONOESTER) EXPDTA X-RAY DIFFRACTION AUTHOR T.T.TIBBITTS,X.XU,E.R.KANTROWITZ REVDAT 4 23-OCT-24 1ALH 1 REMARK REVDAT 3 05-JUN-24 1ALH 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1ALH 1 VERSN REVDAT 1 27-FEB-95 1ALH 0 JRNL AUTH T.T.TIBBITTS,X.XU,E.R.KANTROWITZ JRNL TITL KINETICS AND CRYSTAL STRUCTURE OF A MUTANT ESCHERICHIA COLI JRNL TITL 2 ALKALINE PHOSPHATASE (ASP-369-->ASN): A MECHANISM INVOLVING JRNL TITL 3 ONE ZINC PER ACTIVE SITE. JRNL REF PROTEIN SCI. V. 3 2005 1994 JRNL REFN ISSN 0961-8368 JRNL PMID 7703848 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.E.KIM,H.W.WYCKOFF REMARK 1 TITL REACTION MECHANISM OF ALKALINE PHOSPHATASE BASED ON CRYSTAL REMARK 1 TITL 2 STRUCTURES. TWO METAL ION CATALYSIS REMARK 1 REF J.MOL.BIOL. V. 218 449 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 42809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE DENSITY IS VERY WEAK OR ABSENT FOR RESIDUES 1, 2, 3, REMARK 3 293, AND 408. THEREFORE RESIDUES 1 - 3 ARE OMITTED, AND REMARK 3 THE ATOMIC COORDINATES LISTED FOR RESIDUES 293 AND 408 HAVE REMARK 3 A LARGE UNCERTAINTY. REMARK 4 REMARK 4 1ALH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42809 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 97.19600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.62550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.16000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 97.19600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.62550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.16000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 97.19600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.62550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.16000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 97.19600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.62550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 24 HG1 THR B 85 1.20 REMARK 500 HG1 THR A 85 HH21 ARG B 24 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 587 O HOH A 587 3656 0.59 REMARK 500 O HOH A 574 O HOH A 574 3656 1.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 86 NE2 HIS A 86 CD2 -0.070 REMARK 500 HIS A 125 NE2 HIS A 125 CD2 -0.073 REMARK 500 HIS A 129 NE2 HIS A 129 CD2 -0.073 REMARK 500 HIS A 276 NE2 HIS A 276 CD2 -0.066 REMARK 500 HIS A 372 NE2 HIS A 372 CD2 -0.072 REMARK 500 HIS A 412 NE2 HIS A 412 CD2 -0.068 REMARK 500 HIS A 425 NE2 HIS A 425 CD2 -0.079 REMARK 500 HIS B 86 NE2 HIS B 86 CD2 -0.072 REMARK 500 HIS B 125 NE2 HIS B 125 CD2 -0.068 REMARK 500 HIS B 129 NE2 HIS B 129 CD2 -0.073 REMARK 500 HIS B 162 NE2 HIS B 162 CD2 -0.069 REMARK 500 HIS B 276 NE2 HIS B 276 CD2 -0.067 REMARK 500 HIS B 372 NE2 HIS B 372 CD2 -0.068 REMARK 500 HIS B 412 NE2 HIS B 412 CD2 -0.070 REMARK 500 HIS B 425 NE2 HIS B 425 CD2 -0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 84 CA - CB - CG ANGL. DEV. = 12.2 DEGREES REMARK 500 TYR A 84 CB - CG - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 TYR A 84 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 TRP A 109 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 109 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP A 220 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP A 220 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP A 268 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 268 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR B 84 CA - CB - CG ANGL. DEV. = 12.6 DEGREES REMARK 500 TYR B 84 CB - CG - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR B 84 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 TRP B 109 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP B 109 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 199 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 199 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TRP B 220 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP B 220 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP B 268 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP B 268 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 110.73 -160.51 REMARK 500 HIS A 86 37.56 -144.58 REMARK 500 GLU A 126 15.73 59.07 REMARK 500 ASN A 293 143.24 53.69 REMARK 500 HIS A 372 -165.59 -126.35 REMARK 500 ASP A 408 -65.30 40.00 REMARK 500 HIS B 86 37.63 -143.51 REMARK 500 GLU B 126 15.19 58.22 REMARK 500 ASN B 293 142.95 55.83 REMARK 500 HIS B 372 -165.92 -126.90 REMARK 500 ASP B 408 -65.00 39.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 327 OD1 REMARK 620 2 ASP A 327 OD2 52.7 REMARK 620 3 HIS A 331 NE2 105.5 84.5 REMARK 620 4 HIS A 412 NE2 115.3 167.6 97.5 REMARK 620 5 PO4 A 453 O1 127.7 92.6 108.4 98.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 327 OD1 REMARK 620 2 ASP B 327 OD2 57.3 REMARK 620 3 HIS B 331 NE2 108.9 87.1 REMARK 620 4 HIS B 412 NE2 114.8 170.2 90.6 REMARK 620 5 PO4 B 453 O1 130.9 91.8 106.1 98.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: A REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTICALLY ACTIVE SITE ON A SUBUNIT REMARK 800 REMARK 800 SITE_IDENTIFIER: B REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTICALLY ACTIVE SITE ON B SUBUNIT REMARK 800 REMARK 800 SITE_IDENTIFIER: A2A REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: SECOND ANION BINDING SITE (PO4/SO4) ON A SUBUNIT REMARK 800 REMARK 800 SITE_IDENTIFIER: A2B REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: SECOND ANION BINDING SITE (PO4/SO4) ON B SUBUNIT REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 454 DBREF 1ALH A 4 449 UNP P00634 PPB_ECOLI 26 471 DBREF 1ALH B 4 449 UNP P00634 PPB_ECOLI 26 471 SEQADV 1ALH GLU A 230 UNP P00634 GLN 252 CONFLICT SEQADV 1ALH ASN A 369 UNP P00634 ASP 391 CONFLICT SEQADV 1ALH GLU B 230 UNP P00634 GLN 252 CONFLICT SEQADV 1ALH ASN B 369 UNP P00634 ASP 391 CONFLICT SEQRES 1 A 446 MET PRO VAL LEU GLU ASN ARG ALA ALA GLN GLY ASP ILE SEQRES 2 A 446 THR ALA PRO GLY GLY ALA ARG ARG LEU THR GLY ASP GLN SEQRES 3 A 446 THR ALA ALA LEU ARG ASP SER LEU SER ASP LYS PRO ALA SEQRES 4 A 446 LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY MET GLY ASP SEQRES 5 A 446 SER GLU ILE THR ALA ALA ARG ASN TYR ALA GLU GLY ALA SEQRES 6 A 446 GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU PRO LEU THR SEQRES 7 A 446 GLY GLN TYR THR HIS TYR ALA LEU ASN LYS LYS THR GLY SEQRES 8 A 446 LYS PRO ASP TYR VAL THR ASP SER ALA ALA SER ALA THR SEQRES 9 A 446 ALA TRP SER THR GLY VAL LYS THR TYR ASN GLY ALA LEU SEQRES 10 A 446 GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO THR ILE LEU SEQRES 11 A 446 GLU MET ALA LYS ALA ALA GLY LEU ALA THR GLY ASN VAL SEQRES 12 A 446 SER THR ALA GLU LEU GLN ASP ALA THR PRO ALA ALA LEU SEQRES 13 A 446 VAL ALA HIS VAL THR SER ARG LYS CYS TYR GLY PRO SER SEQRES 14 A 446 ALA THR SER GLU LYS CYS PRO GLY ASN ALA LEU GLU LYS SEQRES 15 A 446 GLY GLY LYS GLY SER ILE THR GLU GLN LEU LEU ASN ALA SEQRES 16 A 446 ARG ALA ASP VAL THR LEU GLY GLY GLY ALA LYS THR PHE SEQRES 17 A 446 ALA GLU THR ALA THR ALA GLY GLU TRP GLN GLY LYS THR SEQRES 18 A 446 LEU ARG GLU GLN ALA GLU ALA ARG GLY TYR GLN LEU VAL SEQRES 19 A 446 SER ASP ALA ALA SER LEU ASN SER VAL THR GLU ALA ASN SEQRES 20 A 446 GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA ASP GLY ASN SEQRES 21 A 446 MET PRO VAL ARG TRP LEU GLY PRO LYS ALA THR TYR HIS SEQRES 22 A 446 GLY ASN ILE ASP LYS PRO ALA VAL THR CYS THR PRO ASN SEQRES 23 A 446 PRO GLN ARG ASN ASP SER VAL PRO THR LEU ALA GLN MET SEQRES 24 A 446 THR ASP LYS ALA ILE GLU LEU LEU SER LYS ASN GLU LYS SEQRES 25 A 446 GLY PHE PHE LEU GLN VAL GLU GLY ALA SER ILE ASP LYS SEQRES 26 A 446 GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN ILE GLY GLU SEQRES 27 A 446 THR VAL ASP LEU ASP GLU ALA VAL GLN ARG ALA LEU GLU SEQRES 28 A 446 PHE ALA LYS LYS GLU GLY ASN THR LEU VAL ILE VAL THR SEQRES 29 A 446 ALA ASN HIS ALA HIS ALA SER GLN ILE VAL ALA PRO ASP SEQRES 30 A 446 THR LYS ALA PRO GLY LEU THR GLN ALA LEU ASN THR LYS SEQRES 31 A 446 ASP GLY ALA VAL MET VAL MET SER TYR GLY ASN SER GLU SEQRES 32 A 446 GLU ASP SER GLN GLU HIS THR GLY SER GLN LEU ARG ILE SEQRES 33 A 446 ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL VAL GLY LEU SEQRES 34 A 446 THR ASP GLN THR ASP LEU PHE TYR THR MET LYS ALA ALA SEQRES 35 A 446 LEU GLY LEU LYS SEQRES 1 B 446 MET PRO VAL LEU GLU ASN ARG ALA ALA GLN GLY ASP ILE SEQRES 2 B 446 THR ALA PRO GLY GLY ALA ARG ARG LEU THR GLY ASP GLN SEQRES 3 B 446 THR ALA ALA LEU ARG ASP SER LEU SER ASP LYS PRO ALA SEQRES 4 B 446 LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY MET GLY ASP SEQRES 5 B 446 SER GLU ILE THR ALA ALA ARG ASN TYR ALA GLU GLY ALA SEQRES 6 B 446 GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU PRO LEU THR SEQRES 7 B 446 GLY GLN TYR THR HIS TYR ALA LEU ASN LYS LYS THR GLY SEQRES 8 B 446 LYS PRO ASP TYR VAL THR ASP SER ALA ALA SER ALA THR SEQRES 9 B 446 ALA TRP SER THR GLY VAL LYS THR TYR ASN GLY ALA LEU SEQRES 10 B 446 GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO THR ILE LEU SEQRES 11 B 446 GLU MET ALA LYS ALA ALA GLY LEU ALA THR GLY ASN VAL SEQRES 12 B 446 SER THR ALA GLU LEU GLN ASP ALA THR PRO ALA ALA LEU SEQRES 13 B 446 VAL ALA HIS VAL THR SER ARG LYS CYS TYR GLY PRO SER SEQRES 14 B 446 ALA THR SER GLU LYS CYS PRO GLY ASN ALA LEU GLU LYS SEQRES 15 B 446 GLY GLY LYS GLY SER ILE THR GLU GLN LEU LEU ASN ALA SEQRES 16 B 446 ARG ALA ASP VAL THR LEU GLY GLY GLY ALA LYS THR PHE SEQRES 17 B 446 ALA GLU THR ALA THR ALA GLY GLU TRP GLN GLY LYS THR SEQRES 18 B 446 LEU ARG GLU GLN ALA GLU ALA ARG GLY TYR GLN LEU VAL SEQRES 19 B 446 SER ASP ALA ALA SER LEU ASN SER VAL THR GLU ALA ASN SEQRES 20 B 446 GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA ASP GLY ASN SEQRES 21 B 446 MET PRO VAL ARG TRP LEU GLY PRO LYS ALA THR TYR HIS SEQRES 22 B 446 GLY ASN ILE ASP LYS PRO ALA VAL THR CYS THR PRO ASN SEQRES 23 B 446 PRO GLN ARG ASN ASP SER VAL PRO THR LEU ALA GLN MET SEQRES 24 B 446 THR ASP LYS ALA ILE GLU LEU LEU SER LYS ASN GLU LYS SEQRES 25 B 446 GLY PHE PHE LEU GLN VAL GLU GLY ALA SER ILE ASP LYS SEQRES 26 B 446 GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN ILE GLY GLU SEQRES 27 B 446 THR VAL ASP LEU ASP GLU ALA VAL GLN ARG ALA LEU GLU SEQRES 28 B 446 PHE ALA LYS LYS GLU GLY ASN THR LEU VAL ILE VAL THR SEQRES 29 B 446 ALA ASN HIS ALA HIS ALA SER GLN ILE VAL ALA PRO ASP SEQRES 30 B 446 THR LYS ALA PRO GLY LEU THR GLN ALA LEU ASN THR LYS SEQRES 31 B 446 ASP GLY ALA VAL MET VAL MET SER TYR GLY ASN SER GLU SEQRES 32 B 446 GLU ASP SER GLN GLU HIS THR GLY SER GLN LEU ARG ILE SEQRES 33 B 446 ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL VAL GLY LEU SEQRES 34 B 446 THR ASP GLN THR ASP LEU PHE TYR THR MET LYS ALA ALA SEQRES 35 B 446 LEU GLY LEU LYS HET ZN A 450 1 HET PO4 A 453 5 HET SO4 A 454 5 HET ZN B 450 1 HET PO4 B 453 5 HET SO4 B 454 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *298(H2 O) HELIX 1 1 GLN A 29 ASP A 35 1 7 HELIX 2 2 GLY A 54 GLY A 67 1 14 HELIX 3 3 GLY A 74 LEU A 78 5 5 HELIX 4 4 ASP A 101 GLY A 112 1 12 HELIX 5 5 THR A 131 ALA A 139 1 9 HELIX 6 6 ASP A 153 ALA A 158 1 6 HELIX 7 7 GLY A 170 CYS A 178 1 9 HELIX 8 8 ALA A 182 GLY A 186 5 5 HELIX 9 9 SER A 190 ARG A 199 1 10 HELIX 10 10 ALA A 208 GLU A 213 5 6 HELIX 11 11 THR A 224 ARG A 232 1 9 HELIX 12 12 ASP A 239 VAL A 246 1 8 HELIX 13 13 HIS A 276 LYS A 281 1 6 HELIX 14 14 PRO A 290 ASN A 293 5 4 HELIX 15 15 THR A 298 LYS A 312 1 15 HELIX 16 16 ALA A 324 ALA A 332 1 9 HELIX 17 17 ASN A 334 GLY A 360 1 27 HELIX 18 18 HIS A 425 VAL A 430 5 6 HELIX 19 19 GLN A 435 GLY A 447 1 13 HELIX 20 20 GLN B 29 ASP B 35 1 7 HELIX 21 21 GLY B 54 GLU B 66 1 13 HELIX 22 22 GLY B 74 LEU B 78 5 5 HELIX 23 23 ASP B 101 GLY B 112 1 12 HELIX 24 24 THR B 131 ALA B 139 1 9 HELIX 25 25 ASP B 153 ALA B 158 1 6 HELIX 26 26 GLY B 170 CYS B 178 1 9 HELIX 27 27 ALA B 182 GLY B 186 5 5 HELIX 28 28 SER B 190 ARG B 199 1 10 HELIX 29 29 ALA B 208 GLU B 213 5 6 HELIX 30 30 THR B 224 GLY B 233 1 10 HELIX 31 31 ASP B 239 VAL B 246 1 8 HELIX 32 32 HIS B 276 LYS B 281 1 6 HELIX 33 33 PRO B 290 ASN B 293 5 4 HELIX 34 34 THR B 298 LYS B 312 1 15 HELIX 35 35 ALA B 324 ALA B 332 1 9 HELIX 36 36 ASN B 334 GLY B 360 1 27 HELIX 37 37 HIS B 425 VAL B 430 5 6 HELIX 38 38 GLN B 435 GLY B 447 1 13 SHEET 1 A10 GLN A 235 VAL A 237 0 SHEET 2 A10 LEU A 255 LEU A 258 1 N LEU A 256 O GLN A 235 SHEET 3 A10 VAL A 202 GLY A 206 1 O THR A 203 N GLY A 257 SHEET 4 A10 ALA A 142 GLU A 150 1 O THR A 143 N VAL A 202 SHEET 5 A10 PHE A 317 GLY A 323 1 N PHE A 318 O ALA A 142 SHEET 6 A10 ASN A 44 GLY A 50 1 N ILE A 45 O PHE A 317 SHEET 7 A10 THR A 362 ALA A 368 1 O LEU A 363 N ILE A 46 SHEET 8 A10 LEU A 417 TYR A 422 -1 O ARG A 418 N ALA A 368 SHEET 9 A10 LEU A 80 THR A 85 -1 O LEU A 80 N ALA A 421 SHEET 10 A10 GLY A 431 ASP A 434 1 O GLY A 431 N GLN A 83 SHEET 1 B 2 ALA A 88 LEU A 89 0 SHEET 2 B 2 PRO A 96 ASP A 97 -1 O ASP A 97 N ALA A 88 SHEET 1 C 2 TRP A 268 LEU A 269 0 SHEET 2 C 2 THR A 287 PRO A 288 -1 O THR A 287 N LEU A 269 SHEET 1 D 4 THR A 274 TYR A 275 0 SHEET 2 D 4 LEU A 386 ASN A 391 -1 N THR A 387 O THR A 274 SHEET 3 D 4 VAL A 397 TYR A 402 -1 O MET A 398 N LEU A 390 SHEET 4 D 4 GLN A 375 VAL A 377 -1 O GLN A 375 N SER A 401 SHEET 1 E 2 ALA A 371 HIS A 372 0 SHEET 2 E 2 HIS A 412 THR A 413 -1 N THR A 413 O ALA A 371 SHEET 1 F10 GLN B 235 VAL B 237 0 SHEET 2 F10 LEU B 255 LEU B 258 1 N LEU B 256 O GLN B 235 SHEET 3 F10 VAL B 202 GLY B 206 1 O THR B 203 N GLY B 257 SHEET 4 F10 ALA B 142 GLU B 150 1 O THR B 143 N VAL B 202 SHEET 5 F10 PHE B 317 GLY B 323 1 N PHE B 318 O ALA B 142 SHEET 6 F10 ASN B 44 GLY B 50 1 N ILE B 45 O PHE B 317 SHEET 7 F10 THR B 362 ALA B 368 1 O LEU B 363 N ILE B 46 SHEET 8 F10 LEU B 417 TYR B 422 -1 O ARG B 418 N ALA B 368 SHEET 9 F10 LEU B 80 THR B 85 -1 O LEU B 80 N ALA B 421 SHEET 10 F10 GLY B 431 ASP B 434 1 O GLY B 431 N GLN B 83 SHEET 1 G 2 ALA B 88 LEU B 89 0 SHEET 2 G 2 PRO B 96 ASP B 97 -1 O ASP B 97 N ALA B 88 SHEET 1 H 2 TRP B 268 LEU B 269 0 SHEET 2 H 2 THR B 287 PRO B 288 -1 O THR B 287 N LEU B 269 SHEET 1 I 4 THR B 274 TYR B 275 0 SHEET 2 I 4 LEU B 386 ASN B 391 -1 N THR B 387 O THR B 274 SHEET 3 I 4 VAL B 397 TYR B 402 -1 O MET B 398 N LEU B 390 SHEET 4 I 4 GLN B 375 VAL B 377 -1 O GLN B 375 N SER B 401 SHEET 1 J 2 ALA B 371 HIS B 372 0 SHEET 2 J 2 HIS B 412 THR B 413 -1 N THR B 413 O ALA B 371 SSBOND 1 CYS A 168 CYS A 178 1555 1555 2.01 SSBOND 2 CYS A 286 CYS A 336 1555 1555 2.01 SSBOND 3 CYS B 168 CYS B 178 1555 1555 2.01 SSBOND 4 CYS B 286 CYS B 336 1555 1555 2.02 LINK OD1 ASP A 327 ZN ZN A 450 1555 1555 2.49 LINK OD2 ASP A 327 ZN ZN A 450 1555 1555 2.37 LINK NE2 HIS A 331 ZN ZN A 450 1555 1555 2.22 LINK NE2 HIS A 412 ZN ZN A 450 1555 1555 2.41 LINK ZN ZN A 450 O1 PO4 A 453 1555 1555 1.95 LINK OD1 ASP B 327 ZN ZN B 450 1555 1555 2.32 LINK OD2 ASP B 327 ZN ZN B 450 1555 1555 2.17 LINK NE2 HIS B 331 ZN ZN B 450 1555 1555 2.27 LINK NE2 HIS B 412 ZN ZN B 450 1555 1555 2.56 LINK ZN ZN B 450 O1 PO4 B 453 1555 1555 2.02 SITE 1 A 14 ASP A 327 HIS A 331 HIS A 412 ZN A 450 SITE 2 A 14 PO4 A 453 ASP A 51 ASN A 369 HIS A 370 SITE 3 A 14 THR A 155 GLU A 322 ASP A 153 LYS A 328 SITE 4 A 14 ARG A 166 SER A 102 SITE 1 B 14 ASP B 327 HIS B 331 HIS B 412 ZN B 450 SITE 2 B 14 PO4 B 453 ASP B 51 ASN B 369 HIS B 370 SITE 3 B 14 THR B 155 GLU B 322 ASP B 153 LYS B 328 SITE 4 B 14 ARG B 166 SER B 102 SITE 1 A2A 4 ARG A 267 ARG A 292 TRP A 268 SO4 A 454 SITE 1 A2B 4 ARG B 267 ARG B 292 TRP B 268 SO4 B 454 SITE 1 AC1 4 ASP A 327 HIS A 331 HIS A 412 PO4 A 453 SITE 1 AC2 7 ASP A 101 SER A 102 ARG A 166 ASP A 327 SITE 2 AC2 7 HIS A 331 HIS A 412 ZN A 450 SITE 1 AC3 3 ARG A 267 TRP A 268 ARG A 292 SITE 1 AC4 4 ASP B 327 HIS B 331 HIS B 412 PO4 B 453 SITE 1 AC5 7 ASP B 101 SER B 102 ARG B 166 ASP B 327 SITE 2 AC5 7 HIS B 331 HIS B 412 ZN B 450 SITE 1 AC6 4 ARG B 267 TRP B 268 PRO B 288 ARG B 292 CRYST1 194.392 167.251 76.320 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013103 0.00000