HEADER CALCIUM/PHOSPHOLIPID-BINDING PROTEIN 21-SEP-95 1ANN TITLE ANNEXIN IV COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANNEXIN IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 32.5 KD CALELECTRIN, ENDONEXIN I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS 32.5KD CALELECTRIN, ENDONEXIN I, LIPOCORTIN IV, CHROMOBINDIN IV, KEYWDS 2 PROTEIN II, CALCIUM-PHOSPHOLIPID-BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.B.SUTTON,S.R.SPRANG REVDAT 4 07-FEB-24 1ANN 1 REMARK LINK REVDAT 3 12-JUN-13 1ANN 1 JRNL VERSN REVDAT 2 24-FEB-09 1ANN 1 VERSN REVDAT 1 29-JAN-96 1ANN 0 JRNL AUTH R.B.SUTTON,S.R.SPRANG JRNL TITL THREE DIMENSIONAL STRUCTURE OF ANNEXIN IV JRNL REF ANNEXINS: MOLECULAR 1996 JRNL REF 2 STRUCTURE TO CELLULAR JRNL REF 3 FUNCTION JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 15208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.430 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.43 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.311 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ANN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-95 REMARK 200 TEMPERATURE (KELVIN) : 296 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : R-AXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 200 DATA REDUNDANCY : 1.200 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.35450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 100 REMARK 475 ALA A 101 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 99 C O CB CG CD CE NZ REMARK 480 GLY A 102 N CA REMARK 480 LYS A 184 CA CB CG CD CE NZ REMARK 480 THR A 187 CB OG1 CG2 REMARK 480 ASP A 188 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 39 -67.62 -101.79 REMARK 500 PHE A 145 -137.29 54.52 REMARK 500 ASP A 263 76.96 -107.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 26 O REMARK 620 2 GLY A 28 O 96.2 REMARK 620 3 GLY A 30 O 101.0 96.8 REMARK 620 4 GLU A 70 OE1 81.7 171.7 75.9 REMARK 620 5 GLU A 70 OE2 85.7 138.8 123.4 49.2 REMARK 620 6 HOH A 324B O 164.3 97.9 84.3 85.4 79.1 REMARK 620 7 HOH A 366A O 99.7 64.9 153.7 123.3 74.2 80.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 319 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 257 O REMARK 620 2 GLY A 259 O 93.1 REMARK 620 3 GLY A 261 O 106.1 93.2 REMARK 620 4 ASP A 301 OD1 86.8 144.4 121.1 REMARK 620 5 ASP A 301 OD2 81.8 164.7 74.6 50.1 REMARK 620 6 HOH A 379B O 88.7 67.6 156.7 76.8 126.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 320 DBREF 1ANN A 1 318 UNP P13214 ANXA4_BOVIN 1 318 SEQRES 1 A 318 ALA ALA LYS GLY GLY THR VAL LYS ALA ALA SER GLY PHE SEQRES 2 A 318 ASN ALA ALA GLU ASP ALA GLN THR LEU ARG LYS ALA MET SEQRES 3 A 318 LYS GLY LEU GLY THR ASP GLU ASP ALA ILE ILE ASN VAL SEQRES 4 A 318 LEU ALA TYR ARG SER THR ALA GLN ARG GLN GLU ILE ARG SEQRES 5 A 318 THR ALA TYR LYS THR THR ILE GLY ARG ASP LEU MET ASP SEQRES 6 A 318 ASP LEU LYS SER GLU LEU SER GLY ASN PHE GLU GLN VAL SEQRES 7 A 318 ILE LEU GLY MET MET THR PRO THR VAL LEU TYR ASP VAL SEQRES 8 A 318 GLN GLU LEU ARG LYS ALA MET LYS GLY ALA GLY THR ASP SEQRES 9 A 318 GLU GLY CYS LEU ILE GLU ILE LEU ALA SER ARG THR PRO SEQRES 10 A 318 GLU GLU ILE ARG ARG ILE ASN GLN THR TYR GLN LEU GLN SEQRES 11 A 318 TYR GLY ARG SER LEU GLU ASP ASP ILE ARG SER ASP THR SEQRES 12 A 318 SER PHE MET PHE GLN ARG VAL LEU VAL SER LEU SER ALA SEQRES 13 A 318 GLY GLY ARG ASP GLU SER ASN TYR LEU ASP ASP ALA LEU SEQRES 14 A 318 MET ARG GLN ASP ALA GLN ASP LEU TYR GLU ALA GLY GLU SEQRES 15 A 318 LYS LYS TRP GLY THR ASP GLU VAL LYS PHE LEU THR VAL SEQRES 16 A 318 LEU CYS SER ARG ASN ARG ASN HIS LEU LEU HIS VAL PHE SEQRES 17 A 318 ASP GLU TYR LYS ARG ILE ALA GLN LYS ASP ILE GLU GLN SEQRES 18 A 318 SER ILE LYS SER GLU THR SER GLY SER PHE GLU ASP ALA SEQRES 19 A 318 LEU LEU ALA ILE VAL LYS CYS MET ARG ASN LYS SER ALA SEQRES 20 A 318 TYR PHE ALA GLU ARG LEU TYR LYS SER MET LYS GLY LEU SEQRES 21 A 318 GLY THR ASP ASP ASP THR LEU ILE ARG VAL MET VAL SER SEQRES 22 A 318 ARG ALA GLU ILE ASP MET LEU ASP ILE ARG ALA ASN PHE SEQRES 23 A 318 LYS ARG LEU TYR GLY LYS SER LEU TYR SER PHE ILE LYS SEQRES 24 A 318 GLY ASP THR SER GLY ASP TYR ARG LYS VAL LEU LEU ILE SEQRES 25 A 318 LEU CYS GLY GLY ASP ASP HET CA A 319 1 HET CA A 320 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *101(H2 O) HELIX 1 1 ALA A 15 MET A 26 1 12 HELIX 2 2 GLU A 33 TYR A 42 1 10 HELIX 3 3 THR A 45 ILE A 59 1 15 HELIX 4 4 LEU A 63 GLU A 70 1 8 HELIX 5 5 GLY A 73 MET A 83 1 11 HELIX 6 6 THR A 86 MET A 98 1 13 HELIX 7 7 GLU A 105 SER A 114 1 10 HELIX 8 8 PRO A 117 TYR A 131 1 15 HELIX 9 9 LEU A 135 ASP A 142 1 8 HELIX 10 10 PHE A 145 ALA A 156 1 12 HELIX 11 11 ASP A 167 GLU A 182 1 16 HELIX 12 12 GLU A 189 SER A 198 1 10 HELIX 13 13 ARG A 201 ALA A 215 1 15 HELIX 14 14 ILE A 219 GLU A 226 1 8 HELIX 15 15 GLY A 229 MET A 257 1 29 HELIX 16 16 ASP A 264 ARG A 274 1 11 HELIX 17 17 MET A 279 TYR A 290 1 12 HELIX 18 18 LEU A 294 ASP A 301 1 8 HELIX 19 19 GLY A 304 CYS A 314 1 11 LINK O MET A 26 CA CA A 320 1555 1555 2.39 LINK O GLY A 28 CA CA A 320 1555 1555 2.35 LINK O GLY A 30 CA CA A 320 1555 1555 2.32 LINK OE1 GLU A 70 CA CA A 320 1555 1555 2.66 LINK OE2 GLU A 70 CA CA A 320 1555 1555 2.57 LINK O MET A 257 CA CA A 319 1555 1555 2.41 LINK O GLY A 259 CA CA A 319 1555 1555 2.42 LINK O GLY A 261 CA CA A 319 1555 1555 2.37 LINK OD1 ASP A 301 CA CA A 319 1555 1555 2.54 LINK OD2 ASP A 301 CA CA A 319 1555 1555 2.58 LINK CA CA A 319 O HOH A 379B 1555 1555 2.57 LINK CA CA A 320 O HOH A 324B 1555 1555 2.70 LINK CA CA A 320 O HOH A 366A 1555 1555 2.64 SITE 1 AC1 5 MET A 257 GLY A 259 GLY A 261 ASP A 301 SITE 2 AC1 5 HOH A 379B SITE 1 AC2 6 MET A 26 GLY A 28 GLY A 30 GLU A 70 SITE 2 AC2 6 HOH A 324B HOH A 366A CRYST1 33.312 124.709 49.439 90.00 110.28 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030019 0.000000 0.011093 0.00000 SCALE2 0.000000 0.008019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021564 0.00000