data_1AO9 # _entry.id 1AO9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AO9 pdb_00001ao9 10.2210/pdb1ao9/pdb WWPDB D_1000171054 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-01-28 2 'Structure model' 1 1 2008-03-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AO9 _pdbx_database_status.recvd_initial_deposition_date 1997-07-22 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1AT4 _pdbx_database_related.details 'ENSEMBLE OF 7 STRUCTURES' _pdbx_database_related.content_type unspecified # _audit_author.name 'Bartley, J.P.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex.' _citation.journal_abbrev Biochemistry _citation.journal_volume 36 _citation.page_first 14502 _citation.page_last 14511 _citation.year 1997 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9398169 _citation.pdbx_database_id_DOI 10.1021/bi970710q # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bartley, J.P.' 1 ? primary 'Brown, T.' 2 ? primary 'Lane, A.N.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*AP*GP*AP*GP*AP*DOP*TP*CP*TP*CP*TP*C)-3') ; _entity.formula_weight 3966.809 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'DI-(OCTYLPHOSPHATE) LINKER BETWEEN PURINE AND PYRIMIDINE STRANDS' # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DA)(DG)(DA)(DG)(DA)(DOP)(DT)(DC)(DT)(DC)(DT)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GAGAGAXTCTCTC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DG n 1 4 DA n 1 5 DG n 1 6 DA n 1 7 DOP n 1 8 DT n 1 9 DC n 1 10 DT n 1 11 DC n 1 12 DT n 1 13 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DOP non-polymer . DIOCTYLPHOSPHATE ? 'C16 H35 O4 P' 322.420 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DOP 7 7 ? ? ? A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DT 12 12 12 DT T A . n A 1 13 DC 13 13 13 DC C A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DT 8 ? P ? A DT 8 P 2 1 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 3 1 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 4 2 Y 1 A DT 8 ? P ? A DT 8 P 5 2 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 6 2 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 7 3 Y 1 A DT 8 ? P ? A DT 8 P 8 3 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 9 3 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 10 4 Y 1 A DT 8 ? P ? A DT 8 P 11 4 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 12 4 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 13 5 Y 1 A DT 8 ? P ? A DT 8 P 14 5 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 15 5 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 16 6 Y 1 A DT 8 ? P ? A DT 8 P 17 6 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 18 6 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 19 7 Y 1 A DT 8 ? P ? A DT 8 P 20 7 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 21 7 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 22 8 Y 1 A DT 8 ? P ? A DT 8 P 23 8 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 24 8 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 25 9 Y 1 A DT 8 ? P ? A DT 8 P 26 9 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 27 9 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 28 10 Y 1 A DT 8 ? P ? A DT 8 P 29 10 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 30 10 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 31 11 Y 1 A DT 8 ? P ? A DT 8 P 32 11 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 33 11 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 34 12 Y 1 A DT 8 ? P ? A DT 8 P 35 12 Y 1 A DT 8 ? OP1 ? A DT 8 OP1 36 12 Y 1 A DT 8 ? OP2 ? A DT 8 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal VNMR 'model building' . ? 1 AMBER refinement . ? 2 VNMR phasing . ? 3 # _cell.entry_id 1AO9 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AO9 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AO9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1AO9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AO9 _struct.title 'INTRAMOLECULAR DNA DUPLEX CONTAINING A NON-NUCLEOTIDE LINKER (GAGAGA-X-TCTCCT), NMR, 12 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AO9 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, INTRAMOLECULAR DUPLEX, DEOXYRIBONUCLEIC ACID' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1AO9 _struct_ref.pdbx_db_accession 1AO9 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1AO9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1AO9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 13 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 1 A DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 1 A DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 1 A DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 A DT 12 N3 ? ? A DA 2 A DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 A DT 12 O4 ? ? A DA 2 A DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 11 N3 ? ? A DG 3 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 11 O2 ? ? A DG 3 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 11 N4 ? ? A DG 3 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 10 N3 ? ? A DA 4 A DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 10 O4 ? ? A DA 4 A DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 9 N3 ? ? A DG 5 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 9 O2 ? ? A DG 5 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 9 N4 ? ? A DG 5 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 6 A DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 6 A DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.45 108.30 2.15 0.30 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.91 108.30 2.61 0.30 N 3 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.30 108.30 2.00 0.30 N 4 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.15 108.30 1.85 0.30 N 5 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.13 108.30 2.83 0.30 N 6 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.77 108.30 2.47 0.30 N 7 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.29 108.30 1.99 0.30 N 8 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.97 108.30 2.67 0.30 N 9 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.50 108.30 2.20 0.30 N 10 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.93 108.30 2.63 0.30 N 11 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.02 108.30 2.72 0.30 N 12 2 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.20 108.30 1.90 0.30 N 13 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.33 108.30 3.03 0.30 N 14 2 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.11 108.30 1.81 0.30 N 15 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.13 108.30 1.83 0.30 N 16 2 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.98 108.30 2.68 0.30 N 17 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.64 108.30 2.34 0.30 N 18 2 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.39 108.30 2.09 0.30 N 19 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.22 108.30 2.92 0.30 N 20 2 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.47 108.30 3.17 0.30 N 21 2 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.58 108.30 2.28 0.30 N 22 2 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.88 108.30 2.58 0.30 N 23 3 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.28 108.30 1.98 0.30 N 24 3 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.65 108.30 2.35 0.30 N 25 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.11 108.30 2.81 0.30 N 26 3 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.86 108.30 2.56 0.30 N 27 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.10 108.30 1.80 0.30 N 28 3 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.65 108.30 3.35 0.30 N 29 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.90 108.30 2.60 0.30 N 30 3 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.46 108.30 2.16 0.30 N 31 3 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.91 108.30 2.61 0.30 N 32 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.89 108.30 2.59 0.30 N 33 3 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.21 108.30 2.91 0.30 N 34 3 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.27 108.30 2.97 0.30 N 35 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.22 108.30 1.92 0.30 N 36 4 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.58 108.30 2.28 0.30 N 37 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.72 108.30 2.42 0.30 N 38 4 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.98 108.30 2.68 0.30 N 39 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.15 108.30 1.85 0.30 N 40 4 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.60 108.30 3.30 0.30 N 41 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.93 108.30 2.63 0.30 N 42 4 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.52 108.30 2.22 0.30 N 43 4 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.86 108.30 2.56 0.30 N 44 4 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.71 108.30 3.41 0.30 N 45 4 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.16 108.30 2.86 0.30 N 46 4 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.17 108.30 2.87 0.30 N 47 5 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.66 108.30 2.36 0.30 N 48 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.90 108.30 2.60 0.30 N 49 5 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.87 108.30 2.57 0.30 N 50 5 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.67 108.30 3.37 0.30 N 51 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.97 108.30 2.67 0.30 N 52 5 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.44 108.30 2.14 0.30 N 53 5 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.87 108.30 2.57 0.30 N 54 5 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.84 108.30 2.54 0.30 N 55 5 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.19 108.30 2.89 0.30 N 56 5 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 112.09 108.30 3.79 0.30 N 57 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.31 108.30 2.01 0.30 N 58 6 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.68 108.30 2.38 0.30 N 59 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.04 108.30 2.74 0.30 N 60 6 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.82 108.30 2.52 0.30 N 61 6 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.13 108.30 1.83 0.30 N 62 6 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.66 108.30 3.36 0.30 N 63 6 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.99 108.30 2.69 0.30 N 64 6 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.49 108.30 2.19 0.30 N 65 6 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.91 108.30 2.61 0.30 N 66 6 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.90 108.30 2.60 0.30 N 67 6 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.23 108.30 2.93 0.30 N 68 6 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.29 108.30 2.99 0.30 N 69 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.42 108.30 2.12 0.30 N 70 7 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.99 108.30 2.69 0.30 N 71 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.74 108.30 2.44 0.30 N 72 7 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.84 108.30 2.54 0.30 N 73 7 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.70 108.30 3.40 0.30 N 74 7 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.97 108.30 2.67 0.30 N 75 7 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.66 108.30 2.36 0.30 N 76 7 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.94 108.30 2.64 0.30 N 77 7 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.26 108.30 2.96 0.30 N 78 7 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.97 108.30 2.67 0.30 N 79 7 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.30 108.30 3.00 0.30 N 80 8 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.20 108.30 1.90 0.30 N 81 8 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.65 108.30 2.35 0.30 N 82 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.07 108.30 2.77 0.30 N 83 8 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.83 108.30 2.53 0.30 N 84 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.12 108.30 1.82 0.30 N 85 8 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.66 108.30 3.36 0.30 N 86 8 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.89 108.30 2.59 0.30 N 87 8 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.43 108.30 2.13 0.30 N 88 8 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.92 108.30 2.62 0.30 N 89 8 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.91 108.30 2.61 0.30 N 90 8 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.20 108.30 2.90 0.30 N 91 8 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.37 108.30 3.07 0.30 N 92 9 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.26 108.30 1.96 0.30 N 93 9 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.65 108.30 2.35 0.30 N 94 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.09 108.30 2.79 0.30 N 95 9 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.85 108.30 2.55 0.30 N 96 9 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.66 108.30 3.36 0.30 N 97 9 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.89 108.30 2.59 0.30 N 98 9 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.44 108.30 2.14 0.30 N 99 9 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.91 108.30 2.61 0.30 N 100 9 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.94 108.30 2.64 0.30 N 101 9 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.19 108.30 2.89 0.30 N 102 9 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.30 108.30 3.00 0.30 N 103 10 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.24 108.30 1.94 0.30 N 104 10 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.67 108.30 2.37 0.30 N 105 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.15 108.30 2.85 0.30 N 106 10 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.85 108.30 2.55 0.30 N 107 10 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.70 108.30 3.40 0.30 N 108 10 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.88 108.30 2.58 0.30 N 109 10 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.46 108.30 2.16 0.30 N 110 10 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.86 108.30 2.56 0.30 N 111 10 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.91 108.30 2.61 0.30 N 112 10 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.23 108.30 2.93 0.30 N 113 10 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.28 108.30 2.98 0.30 N 114 11 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.32 108.30 2.02 0.30 N 115 11 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.66 108.30 2.36 0.30 N 116 11 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.06 108.30 2.76 0.30 N 117 11 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.83 108.30 2.53 0.30 N 118 11 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.14 108.30 1.84 0.30 N 119 11 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.68 108.30 3.38 0.30 N 120 11 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.93 108.30 2.63 0.30 N 121 11 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.45 108.30 2.15 0.30 N 122 11 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.90 108.30 2.60 0.30 N 123 11 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.88 108.30 2.58 0.30 N 124 11 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.22 108.30 2.92 0.30 N 125 11 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.27 108.30 2.97 0.30 N 126 12 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.41 108.30 2.11 0.30 N 127 12 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.99 108.30 2.69 0.30 N 128 12 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.72 108.30 2.42 0.30 N 129 12 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.80 108.30 2.50 0.30 N 130 12 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.12 108.30 1.82 0.30 N 131 12 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.81 108.30 3.51 0.30 N 132 12 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.98 108.30 2.68 0.30 N 133 12 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.65 108.30 2.35 0.30 N 134 12 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.91 108.30 2.61 0.30 N 135 12 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.22 108.30 2.92 0.30 N 136 12 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.92 108.30 2.62 0.30 N 137 12 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.31 108.30 3.01 0.30 N # _pdbx_nmr_ensemble.entry_id 1AO9 _pdbx_nmr_ensemble.conformers_calculated_total_number 12 _pdbx_nmr_ensemble.conformers_submitted_total_number 12 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 5.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 # _pdbx_nmr_refine.entry_id 1AO9 _pdbx_nmr_refine.method 'RESTRAINED MOLECULAR DYNAMICS' _pdbx_nmr_refine.details ;RESTRAINED MOLECULAR DYNAMICS USING AMBER FORCEFIELD UNTIL RESIDUAL RESTRAINT ENERGY WAS LESS THAN 1 KCAL MOL-1. THE BEST 12 STRUCTURES HAD PAIRWISE RMSD OF 0.51 A. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement 'Insight II' II MSI 1 'structure solution' VNMR ? ? 2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DOP 7 ? A DOP 7 2 2 Y 1 A DOP 7 ? A DOP 7 3 3 Y 1 A DOP 7 ? A DOP 7 4 4 Y 1 A DOP 7 ? A DOP 7 5 5 Y 1 A DOP 7 ? A DOP 7 6 6 Y 1 A DOP 7 ? A DOP 7 7 7 Y 1 A DOP 7 ? A DOP 7 8 8 Y 1 A DOP 7 ? A DOP 7 9 9 Y 1 A DOP 7 ? A DOP 7 10 10 Y 1 A DOP 7 ? A DOP 7 11 11 Y 1 A DOP 7 ? A DOP 7 12 12 Y 1 A DOP 7 ? A DOP 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DOP P P N N 108 DOP O1 O N N 109 DOP "O1'" O N N 110 DOP O2 O N N 111 DOP O3 O N N 112 DOP C1 C N N 113 DOP C2 C N N 114 DOP C3 C N N 115 DOP C4 C N N 116 DOP C5 C N N 117 DOP C6 C N N 118 DOP C7 C N N 119 DOP C8 C N N 120 DOP "C1'" C N N 121 DOP "C2'" C N N 122 DOP "C3'" C N N 123 DOP "C4'" C N N 124 DOP "C5'" C N N 125 DOP "C6'" C N N 126 DOP "C7'" C N N 127 DOP "C8'" C N N 128 DOP HO2 H N N 129 DOP H11 H N N 130 DOP H12 H N N 131 DOP H21 H N N 132 DOP H22 H N N 133 DOP H31 H N N 134 DOP H32 H N N 135 DOP H41 H N N 136 DOP H42 H N N 137 DOP H51 H N N 138 DOP H52 H N N 139 DOP H61 H N N 140 DOP H62 H N N 141 DOP H71 H N N 142 DOP H72 H N N 143 DOP H81 H N N 144 DOP H82 H N N 145 DOP H83 H N N 146 DOP "H1'1" H N N 147 DOP "H1'2" H N N 148 DOP "H2'1" H N N 149 DOP "H2'2" H N N 150 DOP "H3'1" H N N 151 DOP "H3'2" H N N 152 DOP "H4'1" H N N 153 DOP "H4'2" H N N 154 DOP "H5'1" H N N 155 DOP "H5'2" H N N 156 DOP "H6'1" H N N 157 DOP "H6'2" H N N 158 DOP "H7'1" H N N 159 DOP "H7'2" H N N 160 DOP "H8'1" H N N 161 DOP "H8'2" H N N 162 DOP "H8'3" H N N 163 DT OP3 O N N 164 DT P P N N 165 DT OP1 O N N 166 DT OP2 O N N 167 DT "O5'" O N N 168 DT "C5'" C N N 169 DT "C4'" C N R 170 DT "O4'" O N N 171 DT "C3'" C N S 172 DT "O3'" O N N 173 DT "C2'" C N N 174 DT "C1'" C N R 175 DT N1 N N N 176 DT C2 C N N 177 DT O2 O N N 178 DT N3 N N N 179 DT C4 C N N 180 DT O4 O N N 181 DT C5 C N N 182 DT C7 C N N 183 DT C6 C N N 184 DT HOP3 H N N 185 DT HOP2 H N N 186 DT "H5'" H N N 187 DT "H5''" H N N 188 DT "H4'" H N N 189 DT "H3'" H N N 190 DT "HO3'" H N N 191 DT "H2'" H N N 192 DT "H2''" H N N 193 DT "H1'" H N N 194 DT H3 H N N 195 DT H71 H N N 196 DT H72 H N N 197 DT H73 H N N 198 DT H6 H N N 199 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DOP P O1 sing N N 113 DOP P "O1'" sing N N 114 DOP P O2 sing N N 115 DOP P O3 doub N N 116 DOP O1 C1 sing N N 117 DOP "O1'" "C1'" sing N N 118 DOP O2 HO2 sing N N 119 DOP C1 C2 sing N N 120 DOP C1 H11 sing N N 121 DOP C1 H12 sing N N 122 DOP C2 C3 sing N N 123 DOP C2 H21 sing N N 124 DOP C2 H22 sing N N 125 DOP C3 C4 sing N N 126 DOP C3 H31 sing N N 127 DOP C3 H32 sing N N 128 DOP C4 C5 sing N N 129 DOP C4 H41 sing N N 130 DOP C4 H42 sing N N 131 DOP C5 C6 sing N N 132 DOP C5 H51 sing N N 133 DOP C5 H52 sing N N 134 DOP C6 C7 sing N N 135 DOP C6 H61 sing N N 136 DOP C6 H62 sing N N 137 DOP C7 C8 sing N N 138 DOP C7 H71 sing N N 139 DOP C7 H72 sing N N 140 DOP C8 H81 sing N N 141 DOP C8 H82 sing N N 142 DOP C8 H83 sing N N 143 DOP "C1'" "C2'" sing N N 144 DOP "C1'" "H1'1" sing N N 145 DOP "C1'" "H1'2" sing N N 146 DOP "C2'" "C3'" sing N N 147 DOP "C2'" "H2'1" sing N N 148 DOP "C2'" "H2'2" sing N N 149 DOP "C3'" "C4'" sing N N 150 DOP "C3'" "H3'1" sing N N 151 DOP "C3'" "H3'2" sing N N 152 DOP "C4'" "C5'" sing N N 153 DOP "C4'" "H4'1" sing N N 154 DOP "C4'" "H4'2" sing N N 155 DOP "C5'" "C6'" sing N N 156 DOP "C5'" "H5'1" sing N N 157 DOP "C5'" "H5'2" sing N N 158 DOP "C6'" "C7'" sing N N 159 DOP "C6'" "H6'1" sing N N 160 DOP "C6'" "H6'2" sing N N 161 DOP "C7'" "C8'" sing N N 162 DOP "C7'" "H7'1" sing N N 163 DOP "C7'" "H7'2" sing N N 164 DOP "C8'" "H8'1" sing N N 165 DOP "C8'" "H8'2" sing N N 166 DOP "C8'" "H8'3" sing N N 167 DT OP3 P sing N N 168 DT OP3 HOP3 sing N N 169 DT P OP1 doub N N 170 DT P OP2 sing N N 171 DT P "O5'" sing N N 172 DT OP2 HOP2 sing N N 173 DT "O5'" "C5'" sing N N 174 DT "C5'" "C4'" sing N N 175 DT "C5'" "H5'" sing N N 176 DT "C5'" "H5''" sing N N 177 DT "C4'" "O4'" sing N N 178 DT "C4'" "C3'" sing N N 179 DT "C4'" "H4'" sing N N 180 DT "O4'" "C1'" sing N N 181 DT "C3'" "O3'" sing N N 182 DT "C3'" "C2'" sing N N 183 DT "C3'" "H3'" sing N N 184 DT "O3'" "HO3'" sing N N 185 DT "C2'" "C1'" sing N N 186 DT "C2'" "H2'" sing N N 187 DT "C2'" "H2''" sing N N 188 DT "C1'" N1 sing N N 189 DT "C1'" "H1'" sing N N 190 DT N1 C2 sing N N 191 DT N1 C6 sing N N 192 DT C2 O2 doub N N 193 DT C2 N3 sing N N 194 DT N3 C4 sing N N 195 DT N3 H3 sing N N 196 DT C4 O4 doub N N 197 DT C4 C5 sing N N 198 DT C5 C7 sing N N 199 DT C5 C6 doub N N 200 DT C7 H71 sing N N 201 DT C7 H72 sing N N 202 DT C7 H73 sing N N 203 DT C6 H6 sing N N 204 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AO9 'b-form double helix' 1AO9 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 13 1_555 -0.484 -0.170 0.484 10.231 -12.370 -3.728 1 A_DG1:DC13_A A 1 ? A 13 ? 19 1 1 A DA 2 1_555 A DT 12 1_555 -0.107 -0.124 0.445 9.000 -17.848 -3.671 2 A_DA2:DT12_A A 2 ? A 12 ? 20 1 1 A DG 3 1_555 A DC 11 1_555 -0.499 -0.221 0.375 2.278 -16.836 -3.593 3 A_DG3:DC11_A A 3 ? A 11 ? 19 1 1 A DA 4 1_555 A DT 10 1_555 -0.013 -0.151 0.723 7.037 -11.805 -2.593 4 A_DA4:DT10_A A 4 ? A 10 ? 20 1 1 A DG 5 1_555 A DC 9 1_555 -0.483 -0.219 0.410 4.243 -18.632 -4.520 5 A_DG5:DC9_A A 5 ? A 9 ? 19 1 1 A DA 6 1_555 A DT 8 1_555 0.328 -0.067 0.499 0.942 -19.972 -7.824 6 A_DA6:DT8_A A 6 ? A 8 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 13 1_555 A DA 2 1_555 A DT 12 1_555 0.077 -1.071 3.098 0.068 -0.312 36.460 -1.672 -0.114 3.107 -0.498 -0.108 36.462 1 AA_DG1DA2:DT12DC13_AA A 1 ? A 13 ? A 2 ? A 12 ? 1 A DA 2 1_555 A DT 12 1_555 A DG 3 1_555 A DC 11 1_555 -0.112 -1.159 3.149 -1.073 2.010 33.586 -2.313 0.027 3.078 3.473 1.855 33.661 2 AA_DA2DG3:DC11DT12_AA A 2 ? A 12 ? A 3 ? A 11 ? 1 A DG 3 1_555 A DC 11 1_555 A DA 4 1_555 A DT 10 1_555 0.207 -0.829 2.911 -2.038 -2.604 38.505 -0.966 -0.538 2.944 -3.940 3.084 38.641 3 AA_DG3DA4:DT10DC11_AA A 3 ? A 11 ? A 4 ? A 10 ? 1 A DA 4 1_555 A DT 10 1_555 A DG 5 1_555 A DC 9 1_555 -0.660 -0.769 3.102 0.270 -1.681 35.662 -1.023 1.114 3.129 -2.743 -0.440 35.701 4 AA_DA4DG5:DC9DT10_AA A 4 ? A 10 ? A 5 ? A 9 ? 1 A DG 5 1_555 A DC 9 1_555 A DA 6 1_555 A DT 8 1_555 0.068 -0.774 3.143 0.037 0.145 39.428 -1.164 -0.096 3.140 0.215 -0.055 39.428 5 AA_DG5DA6:DT8DC9_AA A 5 ? A 9 ? A 6 ? A 8 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITY _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 # _atom_sites.entry_id 1AO9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_