data_1AOJ # _entry.id 1AOJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AOJ pdb_00001aoj 10.2210/pdb1aoj/pdb WWPDB D_1000171064 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AOJ _pdbx_database_status.recvd_initial_deposition_date 1997-07-07 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kishan, K.V.R.' 1 'Newcomer, M.E.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The SH3 domain of Eps8 exists as a novel intertwined dimer.' Nat.Struct.Biol. 4 739 743 1997 NSBIEW US 1072-8368 2024 ? 9303002 10.1038/nsb0997-739 1 'Eps8, a Substrate for the Epidermal Growth Factor Receptor Kinase, Enhances Egf-Dependent Mitogenic Signals' 'Embo J.' 12 3799 ? 1993 EMJODG UK 0261-4189 0897 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kishan, K.V.' 1 ? primary 'Scita, G.' 2 ? primary 'Wong, W.T.' 3 ? primary 'Di Fiore, P.P.' 4 ? primary 'Newcomer, M.E.' 5 ? 1 'Fazioli, F.' 6 ? 1 'Minichiello, L.' 7 ? 1 'Matoska, V.' 8 ? 1 'Castagnino, P.' 9 ? 1 'Miki, T.' 10 ? 1 'Wong, W.T.' 11 ? 1 'Di Fiore, P.P.' 12 ? # _cell.entry_id 1AOJ _cell.length_a 27.690 _cell.length_b 28.338 _cell.length_c 36.825 _cell.angle_alpha 107.53 _cell.angle_beta 96.83 _cell.angle_gamma 104.51 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AOJ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man EPS8 7044.960 2 ? ? 'SH3 DOMAIN' ? 2 water nat water 18.015 35 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SRC HOMOLOGY DOMAIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRTPE _entity_poly.pdbx_seq_one_letter_code_can KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRTPE _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 LYS n 1 3 TYR n 1 4 ALA n 1 5 LYS n 1 6 SER n 1 7 LYS n 1 8 TYR n 1 9 ASP n 1 10 PHE n 1 11 VAL n 1 12 ALA n 1 13 ARG n 1 14 ASN n 1 15 SER n 1 16 SER n 1 17 GLU n 1 18 LEU n 1 19 SER n 1 20 VAL n 1 21 MET n 1 22 LYS n 1 23 ASP n 1 24 ASP n 1 25 VAL n 1 26 LEU n 1 27 GLU n 1 28 ILE n 1 29 LEU n 1 30 ASP n 1 31 ASP n 1 32 ARG n 1 33 ARG n 1 34 GLN n 1 35 TRP n 1 36 TRP n 1 37 LYS n 1 38 VAL n 1 39 ARG n 1 40 ASN n 1 41 ALA n 1 42 SER n 1 43 GLY n 1 44 ASP n 1 45 SER n 1 46 GLY n 1 47 PHE n 1 48 VAL n 1 49 PRO n 1 50 ASN n 1 51 ASN n 1 52 ILE n 1 53 LEU n 1 54 ASP n 1 55 ILE n 1 56 MET n 1 57 ARG n 1 58 THR n 1 59 PRO n 1 60 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EPS8_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q08509 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MNGHMSNRSSGYGVYPSQLNGYGSSPPYSQMDREHSSRTSAKALYEQRKNYARDSVSSVSDVSQYRVEHLTTFVLDRKDA MITVEDGIRKLKLLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTISHCQAVVHACSYDSILALVCKEPTQSK PDLHLFQCDEVKANLISEDIESAISDSKGGKQKRRPEALRMIAKADPGIPPPPRAPAPVPPGTVTQVDVRSRVAAWSAWA ADQGDFEKPRQYHEQEETPEMMAARIDRDVQILNHILDDIEFFITKLQKAAEAFSELSKRKKSKKSKRKGPGEGVLTLRA KPPPPDEFVDCFQKFKHGFNLLAKLKSHIQNPSASDLVHFLFTPLNMVVQATGGPELASSVLSPLLTKDTVDFLNYTATA EERKLWMSLGDSWVKVRAEWPKEQFIPPYVPRFRNGWEPPMLNFMGAPTEQDMYQLAESVANAEHQRKQDSKRLSTEHSN VSDYPPADGYAYSSSMYHRGPHADHGEAAMPFKSTPNHQVDRNYDAVKTQPKKYAKSKYDFVARNSSELSVMKDDVLEIL DDRRQWWKVRNASGDSGFVPNNILDIMRTPESGVGRADPPYTHTIQKQRTEYGLRSADTPSAPSPPPTPAPVPVPLPPSV PAPVSVPKVPADVTRQNSSSSDSGGSIVRDSQRYKQLPVDRRKSQMEEVQDELFQRLTIGRSAAQRKFHVPRQNVPVINI TYDSSPEEVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRSVCPEGARVFNQITVQKAALEDSNGSSELQEIMRRRQ EKISAAASDSGVESFDEGSSH ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AOJ A 1 ? 60 ? Q08509 532 ? 591 ? 6 65 2 1 1AOJ B 1 ? 60 ? Q08509 532 ? 591 ? 6 65 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1AOJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.85 _exptl_crystal.density_percent_sol 33.52 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED FROM 0.4M SODIUM POTASSIUM TARTRATE, PH 7.5. PROTEIN CONC. 6MG/ML. CRYSTALLIZATION TIME 2-3 WEEKS.' # _diffrn.id 1 _diffrn.ambient_temp 300 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1996-02 _diffrn_detector.details 'MSC/YALE MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AOJ _reflns.observed_criterion_sigma_I 4.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.0 _reflns.d_resolution_high 2.5 _reflns.number_obs 3406 _reflns.number_all ? _reflns.percent_possible_obs 97. _reflns.pdbx_Rmerge_I_obs 0.1060000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.6 _reflns_shell.percent_possible_all 92. _reflns_shell.Rmerge_I_obs 0.3970000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 1.8 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1AOJ _refine.ls_number_reflns_obs 2927 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 83.4 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1930000 _refine.ls_R_factor_R_free 0.2700000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 140 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.679 _refine.solvent_model_param_bsol 192.0 _refine.pdbx_ls_cross_valid_method 'R-FREE THROUGHOUT' _refine.details 'REFINEMENT FIRST STARTED WITH X-PLOR SIMULATED ANNEALING PROTOCOL' _refine.pdbx_starting_model 'PDB ENTRY 1SHF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'TNT BCORREL' _refine.pdbx_stereochemistry_target_values 'TNT PROTGEO' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 984 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 1019 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 32.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.005 ? 0.80 1002 'X-RAY DIFFRACTION' ? t_angle_deg 1.54 ? 1.30 1343 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 22.352 ? 0.00 605 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.004 ? 2.00 29 'X-RAY DIFFRACTION' ? t_gen_planes 0.007 ? 5.00 140 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd 0.017 ? 10.0 37 'X-RAY DIFFRACTION' ? # _struct.entry_id 1AOJ _struct.title 'THE SH3 DOMAIN OF EPS8 EXISTS AS A NOVEL INTERTWINED DIMER' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AOJ _struct_keywords.pdbx_keywords 'SIGNAL TRANSDUCTION' _struct_keywords.text 'SIGNAL TRANSDUCTION, SH3 DOMAIN, EPS8, PROLINE RICH PEPTIDE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 50 ? ILE A 52 ? ASN A 55 ILE A 57 5 ? 3 HELX_P HELX_P2 2 ASN B 50 ? ILE B 52 ? ASN B 55 ILE B 57 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 2 ? LYS A 5 ? LYS A 7 LYS A 10 A 2 VAL A 25 ? ILE A 28 ? VAL A 30 ILE A 33 B 1 TRP A 35 ? ARG A 39 ? TRP A 40 ARG A 44 B 2 SER A 45 ? PRO A 49 ? SER A 50 PRO A 54 C 1 LYS B 2 ? LYS B 5 ? LYS B 7 LYS B 10 C 2 VAL B 25 ? ILE B 28 ? VAL B 30 ILE B 33 D 1 TRP B 35 ? ARG B 39 ? TRP B 40 ARG B 44 D 2 SER B 45 ? PRO B 49 ? SER B 50 PRO B 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 2 ? O LYS A 7 N ILE A 28 ? N ILE A 33 B 1 2 O TRP A 36 ? O TRP A 41 N VAL A 48 ? N VAL A 53 C 1 2 O LYS B 2 ? O LYS B 7 N ILE B 28 ? N ILE B 33 D 1 2 O TRP B 36 ? O TRP B 41 N VAL B 48 ? N VAL B 53 # _database_PDB_matrix.entry_id 1AOJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AOJ _atom_sites.fract_transf_matrix[1][1] 0.036114 _atom_sites.fract_transf_matrix[1][2] 0.009346 _atom_sites.fract_transf_matrix[1][3] 0.008035 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.036451 _atom_sites.fract_transf_matrix[2][3] 0.013370 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029131 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 6 6 LYS LYS A . n A 1 2 LYS 2 7 7 LYS LYS A . n A 1 3 TYR 3 8 8 TYR TYR A . n A 1 4 ALA 4 9 9 ALA ALA A . n A 1 5 LYS 5 10 10 LYS LYS A . n A 1 6 SER 6 11 11 SER SER A . n A 1 7 LYS 7 12 12 LYS LYS A . n A 1 8 TYR 8 13 13 TYR TYR A . n A 1 9 ASP 9 14 14 ASP ASP A . n A 1 10 PHE 10 15 15 PHE PHE A . n A 1 11 VAL 11 16 16 VAL VAL A . n A 1 12 ALA 12 17 17 ALA ALA A . n A 1 13 ARG 13 18 18 ARG ARG A . n A 1 14 ASN 14 19 19 ASN ASN A . n A 1 15 SER 15 20 20 SER SER A . n A 1 16 SER 16 21 21 SER SER A . n A 1 17 GLU 17 22 22 GLU GLU A . n A 1 18 LEU 18 23 23 LEU LEU A . n A 1 19 SER 19 24 24 SER SER A . n A 1 20 VAL 20 25 25 VAL VAL A . n A 1 21 MET 21 26 26 MET MET A . n A 1 22 LYS 22 27 27 LYS LYS A . n A 1 23 ASP 23 28 28 ASP ASP A . n A 1 24 ASP 24 29 29 ASP ASP A . n A 1 25 VAL 25 30 30 VAL VAL A . n A 1 26 LEU 26 31 31 LEU LEU A . n A 1 27 GLU 27 32 32 GLU GLU A . n A 1 28 ILE 28 33 33 ILE ILE A . n A 1 29 LEU 29 34 34 LEU LEU A . n A 1 30 ASP 30 35 35 ASP ASP A . n A 1 31 ASP 31 36 36 ASP ASP A . n A 1 32 ARG 32 37 37 ARG ARG A . n A 1 33 ARG 33 38 38 ARG ARG A . n A 1 34 GLN 34 39 39 GLN GLN A . n A 1 35 TRP 35 40 40 TRP TRP A . n A 1 36 TRP 36 41 41 TRP TRP A . n A 1 37 LYS 37 42 42 LYS LYS A . n A 1 38 VAL 38 43 43 VAL VAL A . n A 1 39 ARG 39 44 44 ARG ARG A . n A 1 40 ASN 40 45 45 ASN ASN A . n A 1 41 ALA 41 46 46 ALA ALA A . n A 1 42 SER 42 47 47 SER SER A . n A 1 43 GLY 43 48 48 GLY GLY A . n A 1 44 ASP 44 49 49 ASP ASP A . n A 1 45 SER 45 50 50 SER SER A . n A 1 46 GLY 46 51 51 GLY GLY A . n A 1 47 PHE 47 52 52 PHE PHE A . n A 1 48 VAL 48 53 53 VAL VAL A . n A 1 49 PRO 49 54 54 PRO PRO A . n A 1 50 ASN 50 55 55 ASN ASN A . n A 1 51 ASN 51 56 56 ASN ASN A . n A 1 52 ILE 52 57 57 ILE ILE A . n A 1 53 LEU 53 58 58 LEU LEU A . n A 1 54 ASP 54 59 59 ASP ASP A . n A 1 55 ILE 55 60 60 ILE ILE A . n A 1 56 MET 56 61 61 MET MET A . n A 1 57 ARG 57 62 62 ARG ARG A . n A 1 58 THR 58 63 63 THR THR A . n A 1 59 PRO 59 64 64 PRO PRO A . n A 1 60 GLU 60 65 65 GLU GLU A . n B 1 1 LYS 1 6 6 LYS LYS B . n B 1 2 LYS 2 7 7 LYS LYS B . n B 1 3 TYR 3 8 8 TYR TYR B . n B 1 4 ALA 4 9 9 ALA ALA B . n B 1 5 LYS 5 10 10 LYS LYS B . n B 1 6 SER 6 11 11 SER SER B . n B 1 7 LYS 7 12 12 LYS LYS B . n B 1 8 TYR 8 13 13 TYR TYR B . n B 1 9 ASP 9 14 14 ASP ASP B . n B 1 10 PHE 10 15 15 PHE PHE B . n B 1 11 VAL 11 16 16 VAL VAL B . n B 1 12 ALA 12 17 17 ALA ALA B . n B 1 13 ARG 13 18 18 ARG ARG B . n B 1 14 ASN 14 19 19 ASN ASN B . n B 1 15 SER 15 20 20 SER SER B . n B 1 16 SER 16 21 21 SER SER B . n B 1 17 GLU 17 22 22 GLU GLU B . n B 1 18 LEU 18 23 23 LEU LEU B . n B 1 19 SER 19 24 24 SER SER B . n B 1 20 VAL 20 25 25 VAL VAL B . n B 1 21 MET 21 26 26 MET MET B . n B 1 22 LYS 22 27 27 LYS LYS B . n B 1 23 ASP 23 28 28 ASP ASP B . n B 1 24 ASP 24 29 29 ASP ASP B . n B 1 25 VAL 25 30 30 VAL VAL B . n B 1 26 LEU 26 31 31 LEU LEU B . n B 1 27 GLU 27 32 32 GLU GLU B . n B 1 28 ILE 28 33 33 ILE ILE B . n B 1 29 LEU 29 34 34 LEU LEU B . n B 1 30 ASP 30 35 35 ASP ASP B . n B 1 31 ASP 31 36 36 ASP ASP B . n B 1 32 ARG 32 37 37 ARG ARG B . n B 1 33 ARG 33 38 38 ARG ARG B . n B 1 34 GLN 34 39 39 GLN GLN B . n B 1 35 TRP 35 40 40 TRP TRP B . n B 1 36 TRP 36 41 41 TRP TRP B . n B 1 37 LYS 37 42 42 LYS LYS B . n B 1 38 VAL 38 43 43 VAL VAL B . n B 1 39 ARG 39 44 44 ARG ARG B . n B 1 40 ASN 40 45 45 ASN ASN B . n B 1 41 ALA 41 46 46 ALA ALA B . n B 1 42 SER 42 47 47 SER SER B . n B 1 43 GLY 43 48 48 GLY GLY B . n B 1 44 ASP 44 49 49 ASP ASP B . n B 1 45 SER 45 50 50 SER SER B . n B 1 46 GLY 46 51 51 GLY GLY B . n B 1 47 PHE 47 52 52 PHE PHE B . n B 1 48 VAL 48 53 53 VAL VAL B . n B 1 49 PRO 49 54 54 PRO PRO B . n B 1 50 ASN 50 55 55 ASN ASN B . n B 1 51 ASN 51 56 56 ASN ASN B . n B 1 52 ILE 52 57 57 ILE ILE B . n B 1 53 LEU 53 58 58 LEU LEU B . n B 1 54 ASP 54 59 59 ASP ASP B . n B 1 55 ILE 55 60 60 ILE ILE B . n B 1 56 MET 56 61 61 MET MET B . n B 1 57 ARG 57 62 62 ARG ARG B . n B 1 58 THR 58 63 63 THR THR B . n B 1 59 PRO 59 64 64 PRO PRO B . n B 1 60 GLU 60 65 65 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 69 69 HOH HOH A . C 2 HOH 2 70 70 HOH HOH A . C 2 HOH 3 73 73 HOH HOH A . C 2 HOH 4 75 75 HOH HOH A . C 2 HOH 5 77 77 HOH HOH A . C 2 HOH 6 78 78 HOH HOH A . C 2 HOH 7 79 79 HOH HOH A . C 2 HOH 8 81 81 HOH HOH A . C 2 HOH 9 82 82 HOH HOH A . C 2 HOH 10 83 83 HOH HOH A . C 2 HOH 11 86 86 HOH HOH A . C 2 HOH 12 87 87 HOH HOH A . C 2 HOH 13 89 89 HOH HOH A . C 2 HOH 14 90 90 HOH HOH A . C 2 HOH 15 91 91 HOH HOH A . C 2 HOH 16 92 92 HOH HOH A . C 2 HOH 17 95 95 HOH HOH A . C 2 HOH 18 96 96 HOH HOH A . C 2 HOH 19 97 97 HOH HOH A . D 2 HOH 1 66 66 HOH HOH B . D 2 HOH 2 67 67 HOH HOH B . D 2 HOH 3 68 68 HOH HOH B . D 2 HOH 4 71 71 HOH HOH B . D 2 HOH 5 72 72 HOH HOH B . D 2 HOH 6 74 74 HOH HOH B . D 2 HOH 7 76 76 HOH HOH B . D 2 HOH 8 80 80 HOH HOH B . D 2 HOH 9 84 84 HOH HOH B . D 2 HOH 10 85 85 HOH HOH B . D 2 HOH 11 88 88 HOH HOH B . D 2 HOH 12 93 93 HOH HOH B . D 2 HOH 13 94 94 HOH HOH B . D 2 HOH 14 98 98 HOH HOH B . D 2 HOH 15 99 99 HOH HOH B . D 2 HOH 16 100 100 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3880 ? 1 MORE -27 ? 1 'SSA (A^2)' 7660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-08 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' Other 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ALMN 'model building' . ? 1 TNT refinement 5E ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CCP4 phasing '(ALMN)' ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 14 ? ? CG A ASP 14 ? ? OD1 A ASP 14 ? ? 123.85 118.30 5.55 0.90 N 2 1 CB A ASP 14 ? ? CG A ASP 14 ? ? OD2 A ASP 14 ? ? 112.56 118.30 -5.74 0.90 N 3 1 CB A ASP 28 ? ? CG A ASP 28 ? ? OD2 A ASP 28 ? ? 112.58 118.30 -5.72 0.90 N 4 1 CB A ASP 29 ? ? CG A ASP 29 ? ? OD1 A ASP 29 ? ? 112.68 118.30 -5.62 0.90 N 5 1 CB A ASP 35 ? ? CG A ASP 35 ? ? OD2 A ASP 35 ? ? 112.29 118.30 -6.01 0.90 N 6 1 CB A ASP 36 ? ? CG A ASP 36 ? ? OD1 A ASP 36 ? ? 112.73 118.30 -5.57 0.90 N 7 1 CB A ASP 49 ? ? CG A ASP 49 ? ? OD1 A ASP 49 ? ? 112.61 118.30 -5.69 0.90 N 8 1 CB B ASP 14 ? ? CG B ASP 14 ? ? OD2 B ASP 14 ? ? 112.66 118.30 -5.64 0.90 N 9 1 CB B ASP 28 ? ? CG B ASP 28 ? ? OD1 B ASP 28 ? ? 112.74 118.30 -5.56 0.90 N 10 1 CB B ASP 49 ? ? CG B ASP 49 ? ? OD2 B ASP 49 ? ? 112.12 118.30 -6.18 0.90 N 11 1 C B THR 63 ? ? N B PRO 64 ? ? CA B PRO 64 ? ? 131.20 119.30 11.90 1.50 Y 12 1 C B THR 63 ? ? N B PRO 64 ? ? CD B PRO 64 ? ? 113.31 128.40 -15.09 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 36 ? ? 32.42 58.07 2 1 ARG A 37 ? ? 54.63 15.46 3 1 PRO A 64 ? ? -57.00 51.31 4 1 ASN B 19 ? ? -101.01 -142.28 5 1 ASP B 35 ? ? 68.05 -178.73 6 1 ARG B 38 ? ? -68.27 -70.00 7 1 GLN B 39 ? ? 47.95 75.41 8 1 PRO B 64 ? ? -21.68 -89.04 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 65 ? CG ? A GLU 60 CG 2 1 Y 1 A GLU 65 ? CD ? A GLU 60 CD 3 1 Y 1 A GLU 65 ? OE1 ? A GLU 60 OE1 4 1 Y 1 A GLU 65 ? OE2 ? A GLU 60 OE2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1SHF _pdbx_initial_refinement_model.details 'PDB ENTRY 1SHF' #