HEADER HYDROLASE(ACTING ON ACID ANHYDRIDES) 20-FEB-91 1APS TITLE THREE-DIMENSIONAL STRUCTURE OF ACYLPHOSPHATASE. REFINEMENT AND TITLE 2 STRUCTURE ANALYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYLPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796 KEYWDS HYDROLASE(ACTING ON ACID ANHYDRIDES) EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR V.SAUDEK,A.PASTORE,G.RAMPONI,R.J.P.WILLIAMS REVDAT 4 16-FEB-22 1APS 1 REMARK REVDAT 3 24-FEB-09 1APS 1 VERSN REVDAT 2 01-APR-03 1APS 1 JRNL REVDAT 1 15-JUL-92 1APS 0 JRNL AUTH A.PASTORE,V.SAUDEK,G.RAMPONI,R.J.WILLIAMS JRNL TITL THREE-DIMENSIONAL STRUCTURE OF ACYLPHOSPHATASE. REFINEMENT JRNL TITL 2 AND STRUCTURE ANALYSIS. JRNL REF J.MOL.BIOL. V. 224 427 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1313885 JRNL DOI 10.1016/0022-2836(92)91005-A REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.SAUDEK,M.R.WORMALD,R.J.P.WILLIAMS,J.BOYD,M.STEFANI, REMARK 1 AUTH 2 G.RAMPONI REMARK 1 TITL IDENTIFICATION AND DESCRIPTION OF BETA-STRUCTURE IN HORSE REMARK 1 TITL 2 MUSCLE ACYLPHOSPHATASE BY NUCLEAR MAGNETIC RESONANCE REMARK 1 TITL 3 SPECTROSCOPY REMARK 1 REF J.MOL.BIOL. V. 207 405 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH V.SAUDEK,R.A.ATKINSON,R.J.P.WILLIAMS,G.RAMPONI REMARK 1 TITL IDENTIFICATION AND DESCRIPTION OF ALPHA-HELICAL REGIONS IN REMARK 1 TITL 2 HORSE MUSCLE ACYLPHOSPHATASE BY 1H NUCLEAR MAGNETIC REMARK 1 TITL 3 RESONANCE SPECTROSCOPY REMARK 1 REF J.MOL.BIOL. V. 205 229 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1APS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171107. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 TYR A 98 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 2 TYR A 25 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 2 TYR A 91 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 3 TYR A 25 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 3 TYR A 91 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 4 TYR A 11 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 4 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 TYR A 25 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 5 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 TYR A 25 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 18 -139.14 53.33 REMARK 500 1 VAL A 20 99.91 -54.13 REMARK 500 1 MET A 24 -57.19 63.90 REMARK 500 1 THR A 46 83.52 -64.83 REMARK 500 1 THR A 48 -169.52 -102.61 REMARK 500 1 LEU A 65 -36.74 71.01 REMARK 500 1 LYS A 67 99.64 -61.73 REMARK 500 1 SER A 72 -68.55 -178.66 REMARK 500 1 ARG A 77 112.87 68.39 REMARK 500 1 ASN A 82 90.35 69.44 REMARK 500 1 ILE A 86 -159.93 -126.07 REMARK 500 1 LYS A 88 157.34 59.01 REMARK 500 1 GLU A 90 34.55 -83.04 REMARK 500 1 ASN A 93 176.66 59.83 REMARK 500 1 SER A 95 -139.53 -108.70 REMARK 500 2 THR A 2 -43.82 59.75 REMARK 500 2 ALA A 3 -36.83 69.41 REMARK 500 2 LEU A 6 38.49 -166.64 REMARK 500 2 LYS A 7 79.51 -104.37 REMARK 500 2 ARG A 16 -79.82 -98.64 REMARK 500 2 VAL A 20 -71.77 -27.91 REMARK 500 2 CYS A 21 -27.54 64.44 REMARK 500 2 PHE A 22 20.51 -63.97 REMARK 500 2 ARG A 23 -73.38 -62.86 REMARK 500 2 THR A 42 37.22 -77.76 REMARK 500 2 SER A 43 -50.99 65.00 REMARK 500 2 PRO A 54 86.85 -61.30 REMARK 500 2 GLU A 56 -88.87 55.53 REMARK 500 2 SER A 72 124.04 67.85 REMARK 500 2 ASP A 76 -48.79 -134.74 REMARK 500 2 SER A 81 -165.70 -120.61 REMARK 500 2 ASN A 82 74.06 47.67 REMARK 500 2 LEU A 89 76.94 -67.38 REMARK 500 2 GLU A 90 59.29 -96.34 REMARK 500 2 TYR A 91 131.27 179.50 REMARK 500 2 ASN A 93 134.70 -174.85 REMARK 500 2 ARG A 97 104.50 -59.63 REMARK 500 3 THR A 2 46.57 -75.42 REMARK 500 3 ALA A 3 -51.92 54.91 REMARK 500 3 GLN A 18 -30.86 71.84 REMARK 500 3 CYS A 21 -85.56 -149.04 REMARK 500 3 PHE A 22 -46.91 58.14 REMARK 500 3 ARG A 23 -81.11 -12.05 REMARK 500 3 VAL A 36 152.16 65.15 REMARK 500 3 THR A 46 79.97 -61.16 REMARK 500 3 PRO A 54 82.61 -15.18 REMARK 500 3 GLU A 56 -88.29 57.91 REMARK 500 3 SER A 70 -74.68 -128.28 REMARK 500 3 PRO A 71 102.39 -44.12 REMARK 500 3 SER A 73 -66.35 -155.38 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 98 0.11 SIDE CHAIN REMARK 500 2 TYR A 11 0.07 SIDE CHAIN REMARK 500 2 TYR A 25 0.08 SIDE CHAIN REMARK 500 2 ARG A 74 0.10 SIDE CHAIN REMARK 500 3 TYR A 11 0.08 SIDE CHAIN REMARK 500 3 PHE A 94 0.09 SIDE CHAIN REMARK 500 4 TYR A 11 0.14 SIDE CHAIN REMARK 500 4 PHE A 22 0.08 SIDE CHAIN REMARK 500 5 TYR A 11 0.12 SIDE CHAIN REMARK 500 5 TYR A 25 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 CYS A 21 10.60 REMARK 500 1 ASN A 93 10.99 REMARK 500 2 PRO A 54 10.48 REMARK 500 2 GLU A 55 10.43 REMARK 500 2 ILE A 75 10.78 REMARK 500 3 VAL A 36 11.25 REMARK 500 5 ALA A 26 -10.51 REMARK 500 5 VAL A 47 10.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 1APS A 1 98 UNP P00818 ACYP2_HORSE 1 98 SEQRES 1 A 98 SER THR ALA ARG PRO LEU LYS SER VAL ASP TYR GLU VAL SEQRES 2 A 98 PHE GLY ARG VAL GLN GLY VAL CYS PHE ARG MET TYR ALA SEQRES 3 A 98 GLU ASP GLU ALA ARG LYS ILE GLY VAL VAL GLY TRP VAL SEQRES 4 A 98 LYS ASN THR SER LYS GLY THR VAL THR GLY GLN VAL GLN SEQRES 5 A 98 GLY PRO GLU GLU LYS VAL ASN SER MET LYS SER TRP LEU SEQRES 6 A 98 SER LYS VAL GLY SER PRO SER SER ARG ILE ASP ARG THR SEQRES 7 A 98 ASN PHE SER ASN GLU LYS THR ILE SER LYS LEU GLU TYR SEQRES 8 A 98 SER ASN PHE SER VAL ARG TYR HELIX 1 H1 PHE A 22 ILE A 33 1 12 HELIX 2 H2 GLU A 55 LEU A 65 1 11 SHEET 1 55 5 LYS A 7 VAL A 13 0 SHEET 2 55 5 VAL A 36 THR A 42 1 SHEET 3 55 5 THR A 46 GLY A 53 -1 SHEET 4 55 5 ARG A 77 THR A 85 1 SHEET 5 55 5 ASN A 93 ARG A 97 -1 CISPEP 1 SER A 70 PRO A 71 4 -10.83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1