HEADER KINASE 05-AUG-97 1AQ2 TITLE PHOSPHOENOLPYRUVATE CARBOXYKINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-OXALOACETATE CARBOXY-LYASE (ATP); COMPND 5 EC: 4.1.1.49; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ORDERED MAGNESIUM AND MANGANESE IONS OBSERVED BOUND TO COMPND 8 ATP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_GENE: PCKA; SOURCE 9 OTHER_DETAILS: NATIVE PROMOTER OF E. COLI PCKA GENE, HIGHLY AEROBIC SOURCE 10 GROWTH TO EARLY STATIONARY PHASE IN THE ABSENCE OF CARBOHYDRATES KEYWDS KINASE, TRANSPHOSPHORYLATING, P-LOOP, PROTEIN-ATP COMPLEX, KEYWDS 2 NUCLEOTIDE-TRIPHOSPHATE HYDROLASE, LYASE, GLUCONEOGENESIS EXPDTA X-RAY DIFFRACTION AUTHOR L.W.TARI,A.MATTE,H.GOLDIE,L.T.J.DELBAERE REVDAT 7 15-NOV-23 1AQ2 1 ATOM REVDAT 6 02-AUG-23 1AQ2 1 REMARK LINK REVDAT 5 18-APR-18 1AQ2 1 REMARK REVDAT 4 29-NOV-17 1AQ2 1 HELIX REVDAT 3 13-JUL-11 1AQ2 1 VERSN REVDAT 2 24-FEB-09 1AQ2 1 VERSN REVDAT 1 14-OCT-98 1AQ2 0 JRNL AUTH L.W.TARI,A.MATTE,H.GOLDIE,L.T.DELBAERE JRNL TITL MG(2+)-MN2+ CLUSTERS IN ENZYME-CATALYZED PHOSPHORYL-TRANSFER JRNL TITL 2 REACTIONS. JRNL REF NAT.STRUCT.BIOL. V. 4 990 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9406547 JRNL DOI 10.1038/NSB1297-990 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.MATTE,H.GOLDIE,R.M.SWEET,L.T.DELBAERE REMARK 1 TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHOENOLPYRUVATE REMARK 1 TITL 2 CARBOXYKINASE: A NEW STRUCTURAL FAMILY WITH THE P-LOOP REMARK 1 TITL 3 NUCLEOSIDE TRIPHOSPHATE HYDROLASE FOLD REMARK 1 REF J.MOL.BIOL. V. 256 126 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.W.TARI,A.MATTE,U.PUGAZHENTHI,H.GOLDIE,L.T.DELBAERE REMARK 1 TITL SNAPSHOT OF AN ENZYME REACTION INTERMEDIATE IN THE STRUCTURE REMARK 1 TITL 2 OF THE ATP-MG2+-OXALATE TERNARY COMPLEX OF ESCHERICHIA COLI REMARK 1 TITL 3 PEP CARBOXYKINASE REMARK 1 REF NAT.STRUCT.BIOL. V. 3 355 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.T.DELBAERE,M.VANDONSELAAR,D.GLAESKE,C.JABS,H.GOLDIE REMARK 1 TITL CRYSTALLIZATION OF THE CALCIUM-ACTIVATED PHOSPHOENOLPYRUVATE REMARK 1 TITL 2 CARBOXYKINASE FROM ESCHERICHIA COLI K12 REMARK 1 REF J.MOL.BIOL. V. 219 593 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH V.MEDINA,R.PONTAROLLO,D.GLAESKE,H.TABEL,H.GOLDIE REMARK 1 TITL SEQUENCE OF THE PCKA GENE OF ESCHERICHIA COLI K-12: REMARK 1 TITL 2 RELEVANCE TO GENETIC AND ALLOSTERIC REGULATION AND HOMOLOGY REMARK 1 TITL 3 OF E. COLI PHOSPHOENOLPYRUVATE CARBOXYKINASE WITH THE REMARK 1 TITL 4 ENZYMES FROM TRYPANOSOMA BRUCEI AND SACCHAROMYCES CEREVISIAE REMARK 1 REF J.BACTERIOL. V. 172 7151 1990 REMARK 1 REFN ISSN 0021-9193 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 37529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE-R REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1907 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.320 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : ENRAF-NONIUS FAST REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MADNES REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39324 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1AYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.09500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.09500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 GLU A 395 REMARK 465 ARG A 396 REMARK 465 GLY A 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 4 CG OD1 ND2 REMARK 470 ASN A 5 CG OD1 ND2 REMARK 470 HIS A 21 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 THR A 394 CB OG1 CG2 REMARK 470 ILE A 398 CB CG1 CG2 CD1 REMARK 470 THR A 399 OG1 CG2 REMARK 470 GLU A 400 CG CD OE1 OE2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 LYS A 492 CB CG CD CE NZ REMARK 470 LYS A 539 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 77 O ILE A 398 4545 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 62.61 151.49 REMARK 500 HIS A 21 -72.91 -78.90 REMARK 500 ASP A 269 -34.40 -153.63 REMARK 500 ASP A 274 -160.39 -109.90 REMARK 500 ASP A 307 -17.92 93.80 REMARK 500 ASN A 312 11.58 56.48 REMARK 500 ASN A 331 43.87 -85.46 REMARK 500 LYS A 390 -93.37 -75.53 REMARK 500 LEU A 391 50.46 151.59 REMARK 500 GLU A 400 96.10 58.12 REMARK 500 ALA A 407 135.35 -39.30 REMARK 500 CYS A 408 19.42 59.12 REMARK 500 MET A 477 -59.79 80.74 REMARK 500 THR A 525 3.97 -68.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 543 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 213 NZ REMARK 620 2 HIS A 232 NE2 85.6 REMARK 620 3 ASP A 269 OD1 103.9 94.6 REMARK 620 4 ATP A 541 O1G 168.9 96.0 86.9 REMARK 620 5 HOH A 547 O 92.1 177.2 84.3 86.6 REMARK 620 6 HOH A 548 O 89.6 95.0 164.0 79.4 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 544 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 255 OG1 REMARK 620 2 ATP A 541 O3G 174.5 REMARK 620 3 ATP A 541 O2B 93.2 81.5 REMARK 620 4 HOH A 546 O 87.6 90.4 84.9 REMARK 620 5 HOH A 746 O 94.5 90.7 170.3 89.4 REMARK 620 6 HOH A 747 O 95.5 86.1 90.1 174.3 95.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ACTIVE SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 541 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 542 DBREF 1AQ2 A 1 540 UNP P22259 PPCK_ECOLI 1 540 SEQRES 1 A 540 MET ARG VAL ASN ASN GLY LEU THR PRO GLN GLU LEU GLU SEQRES 2 A 540 ALA TYR GLY ILE SER ASP VAL HIS ASP ILE VAL TYR ASN SEQRES 3 A 540 PRO SER TYR ASP LEU LEU TYR GLN GLU GLU LEU ASP PRO SEQRES 4 A 540 SER LEU THR GLY TYR GLU ARG GLY VAL LEU THR ASN LEU SEQRES 5 A 540 GLY ALA VAL ALA VAL ASP THR GLY ILE PHE THR GLY ARG SEQRES 6 A 540 SER PRO LYS ASP LYS TYR ILE VAL ARG ASP ASP THR THR SEQRES 7 A 540 ARG ASP THR PHE TRP TRP ALA ASP LYS GLY LYS GLY LYS SEQRES 8 A 540 ASN ASP ASN LYS PRO LEU SER PRO GLU THR TRP GLN HIS SEQRES 9 A 540 LEU LYS GLY LEU VAL THR ARG GLN LEU SER GLY LYS ARG SEQRES 10 A 540 LEU PHE VAL VAL ASP ALA PHE CYS GLY ALA ASN PRO ASP SEQRES 11 A 540 THR ARG LEU SER VAL ARG PHE ILE THR GLU VAL ALA TRP SEQRES 12 A 540 GLN ALA HIS PHE VAL LYS ASN MET PHE ILE ARG PRO SER SEQRES 13 A 540 ASP GLU GLU LEU ALA GLY PHE LYS PRO ASP PHE ILE VAL SEQRES 14 A 540 MET ASN GLY ALA LYS CYS THR ASN PRO GLN TRP LYS GLU SEQRES 15 A 540 GLN GLY LEU ASN SER GLU ASN PHE VAL ALA PHE ASN LEU SEQRES 16 A 540 THR GLU ARG MET GLN LEU ILE GLY GLY THR TRP TYR GLY SEQRES 17 A 540 GLY GLU MET LYS LYS GLY MET PHE SER MET MET ASN TYR SEQRES 18 A 540 LEU LEU PRO LEU LYS GLY ILE ALA SER MET HIS CYS SER SEQRES 19 A 540 ALA ASN VAL GLY GLU LYS GLY ASP VAL ALA VAL PHE PHE SEQRES 20 A 540 GLY LEU SER GLY THR GLY LYS THR THR LEU SER THR ASP SEQRES 21 A 540 PRO LYS ARG ARG LEU ILE GLY ASP ASP GLU HIS GLY TRP SEQRES 22 A 540 ASP ASP ASP GLY VAL PHE ASN PHE GLU GLY GLY CYS TYR SEQRES 23 A 540 ALA LYS THR ILE LYS LEU SER LYS GLU ALA GLU PRO GLU SEQRES 24 A 540 ILE TYR ASN ALA ILE ARG ARG ASP ALA LEU LEU GLU ASN SEQRES 25 A 540 VAL THR VAL ARG GLU ASP GLY THR ILE ASP PHE ASP ASP SEQRES 26 A 540 GLY SER LYS THR GLU ASN THR ARG VAL SER TYR PRO ILE SEQRES 27 A 540 TYR HIS ILE ASP ASN ILE VAL LYS PRO VAL SER LYS ALA SEQRES 28 A 540 GLY HIS ALA THR LYS VAL ILE PHE LEU THR ALA ASP ALA SEQRES 29 A 540 PHE GLY VAL LEU PRO PRO VAL SER ARG LEU THR ALA ASP SEQRES 30 A 540 GLN THR GLN TYR HIS PHE LEU SER GLY PHE THR ALA LYS SEQRES 31 A 540 LEU ALA GLY THR GLU ARG GLY ILE THR GLU PRO THR PRO SEQRES 32 A 540 THR PHE SER ALA CYS PHE GLY ALA ALA PHE LEU SER LEU SEQRES 33 A 540 HIS PRO THR GLN TYR ALA GLU VAL LEU VAL LYS ARG MET SEQRES 34 A 540 GLN ALA ALA GLY ALA GLN ALA TYR LEU VAL ASN THR GLY SEQRES 35 A 540 TRP ASN GLY THR GLY LYS ARG ILE SER ILE LYS ASP THR SEQRES 36 A 540 ARG ALA ILE ILE ASP ALA ILE LEU ASN GLY SER LEU ASP SEQRES 37 A 540 ASN ALA GLU THR PHE THR LEU PRO MET PHE ASN LEU ALA SEQRES 38 A 540 ILE PRO THR GLU LEU PRO GLY VAL ASP THR LYS ILE LEU SEQRES 39 A 540 ASP PRO ARG ASN THR TYR ALA SER PRO GLU GLN TRP GLN SEQRES 40 A 540 GLU LYS ALA GLU THR LEU ALA LYS LEU PHE ILE ASP ASN SEQRES 41 A 540 PHE ASP LYS TYR THR ASP THR PRO ALA GLY ALA ALA LEU SEQRES 42 A 540 VAL ALA ALA GLY PRO LYS LEU HET MN A 543 1 HET MG A 544 1 HET ATP A 541 31 HET PYR A 542 6 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PYR PYRUVIC ACID FORMUL 2 MN MN 2+ FORMUL 3 MG MG 2+ FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 PYR C3 H4 O3 FORMUL 6 HOH *232(H2 O) HELIX 1 A PRO A 9 GLY A 16 1SEE REMARK 650 8 HELIX 2 B TYR A 29 GLU A 36 1SEE REMARK 650 8 HELIX 3 C PRO A 99 LEU A 113 1SEE REMARK 650 15 HELIX 4 D ALA A 142 MET A 151 1SEE REMARK 650 10 HELIX 5 E GLY A 209 LEU A 225 1SEE REMARK 650 17 HELIX 6 F GLY A 253 SER A 258 1SEE REMARK 650 6 HELIX 7 G PRO A 298 ALA A 303 1SEE REMARK 650 6 HELIX 8 H ALA A 376 SER A 385 1SEE REMARK 650 10 HELIX 9 I PRO A 418 ALA A 432 1SEE REMARK 650 15 HELIX 10 J SER A 451 LEU A 463 1SEE REMARK 650 13 HELIX 11 K THR A 491 LEU A 494 5SEE REMARK 650 4 HELIX 12 L PRO A 503 TYR A 524 1SEE REMARK 650 22 HELIX 13 M PRO A 528 LEU A 533 1SEE REMARK 650 6 HELIX 14 N VAL A 534 ALA A 536 5SEE REMARK 650 3 SHEET 1 A 8 ASP A 22 TYR A 25 0 SHEET 2 A 8 ARG A 117 CYS A 125 1 SHEET 3 A 8 LEU A 133 THR A 139 -1 SHEET 4 A 8 PHE A 167 GLY A 172 1 SHEET 5 A 8 MET A 199 GLY A 203 1 SHEET 6 A 8 PHE A 190 ASN A 194 -1 SHEET 7 A 8 LYS A 70 VAL A 73 1 SHEET 8 A 8 LYS A 95 LEU A 97 1 SHEET 1 B 5 GLY A 47 LEU A 49 0 SHEET 2 B 5 VAL A 55 VAL A 57 -1 SHEET 3 B 5 LEU A 309 GLU A 311 1 SHEET 4 B 5 ARG A 333 TYR A 336 -1 SHEET 5 B 5 GLY A 284 LYS A 288 -1 SHEET 1 C 4 SER A 349 GLY A 352 0 SHEET 2 C 4 GLY A 277 ASN A 280 -1 SHEET 3 C 4 GLU A 270 ASP A 274 -1 SHEET 4 C 4 ALA A 229 HIS A 232 -1 SHEET 1 D 6 ARG A 264 GLY A 267 0 SHEET 2 D 6 SER A 234 VAL A 237 -1 SHEET 3 D 6 VAL A 243 PHE A 247 -1 SHEET 4 D 6 THR A 355 THR A 361 1 SHEET 5 D 6 GLN A 435 ASN A 440 1 SHEET 6 D 6 VAL A 371 ARG A 373 -1 LINK NZ LYS A 213 MN MN A 543 1555 1555 2.47 LINK NE2 HIS A 232 MN MN A 543 1555 1555 2.35 LINK OG1 THR A 255 MG MG A 544 1555 1555 2.15 LINK OD1 ASP A 269 MN MN A 543 1555 1555 2.30 LINK O1G ATP A 541 MN MN A 543 1555 1555 2.10 LINK O3G ATP A 541 MG MG A 544 1555 1555 2.13 LINK O2B ATP A 541 MG MG A 544 1555 1555 2.09 LINK MN MN A 543 O HOH A 547 1555 1555 2.40 LINK MN MN A 543 O HOH A 548 1555 1555 2.30 LINK MG MG A 544 O HOH A 546 1555 1555 2.15 LINK MG MG A 544 O HOH A 746 1555 1555 2.19 LINK MG MG A 544 O HOH A 747 1555 1555 2.16 CISPEP 1 LYS A 346 PRO A 347 0 -0.13 SITE 1 ACT 4 ARG A 65 TYR A 207 LYS A 212 LYS A 213 SITE 1 AC1 6 LYS A 213 HIS A 232 ASP A 269 ATP A 541 SITE 2 AC1 6 HOH A 547 HOH A 548 SITE 1 AC2 6 THR A 255 ASP A 268 ATP A 541 HOH A 546 SITE 2 AC2 6 HOH A 746 HOH A 747 SITE 1 AC3 31 HIS A 232 LEU A 249 SER A 250 GLY A 251 SITE 2 AC3 31 THR A 252 GLY A 253 LYS A 254 THR A 255 SITE 3 AC3 31 THR A 256 ASP A 269 LYS A 288 ILE A 290 SITE 4 AC3 31 GLU A 297 ARG A 333 ARG A 449 ILE A 450 SITE 5 AC3 31 SER A 451 ILE A 452 THR A 455 PYR A 542 SITE 6 AC3 31 MN A 543 MG A 544 HOH A 546 HOH A 547 SITE 7 AC3 31 HOH A 548 HOH A 604 HOH A 617 HOH A 736 SITE 8 AC3 31 HOH A 746 HOH A 747 HOH A 748 SITE 1 AC4 9 ARG A 65 LYS A 213 TYR A 286 ARG A 333 SITE 2 AC4 9 ATP A 541 HOH A 547 HOH A 548 HOH A 678 SITE 3 AC4 9 HOH A 679 CRYST1 126.190 96.610 46.860 90.00 95.80 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007925 0.000000 0.000805 0.00000 SCALE2 0.000000 0.010351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021450 0.00000