HEADER SERINE PROTEINASE INHIBITOR 29-MAR-93 1ATT TITLE CRYSTAL STRUCTURE OF CLEAVED BOVINE ANTITHROMBIN III AT 3.2 ANGSTROMS TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITHROMBIN III; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS SERINE PROTEINASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR L.MOUREY,J.P.SAMAMA,M.DELARUE,D.MORAS REVDAT 5 16-OCT-24 1ATT 1 REMARK REVDAT 4 05-JUN-24 1ATT 1 REMARK REVDAT 3 24-FEB-09 1ATT 1 VERSN REVDAT 2 01-APR-03 1ATT 1 JRNL REVDAT 1 31-JUL-94 1ATT 0 JRNL AUTH L.MOUREY,J.P.SAMAMA,M.DELARUE,M.PETITOU,J.CHOAY,D.MORAS JRNL TITL CRYSTAL STRUCTURE OF CLEAVED BOVINE ANTITHROMBIN III AT 3.2 JRNL TITL 2 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 232 223 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8331659 JRNL DOI 10.1006/JMBI.1993.1378 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.MOUREY,J.P.SAMAMA,M.DELARUE,J.CHOAY,J.C.LORMEAU,M.PETITOU, REMARK 1 AUTH 2 D.MORAS REMARK 1 TITL ANTITHROMBIN III: STRUCTURAL AND FUNCTIONAL ASPECTS REMARK 1 REF BIOCHIMIE V. 72 599 1990 REMARK 1 REFN ISSN 0300-9084 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.DELARUE,J.-P.SAMAMA,L.MOUREY,D.MORAS REMARK 1 TITL CRYSTAL STRUCTURE OF BOVINE ANTITHROMBIN III REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 46 550 1990 REMARK 1 REFN ISSN 0108-7681 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.P.SAMAMA,M.DELARUE,L.MOUREY,J.CHOAY,D.MORAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC DATA FOR REMARK 1 TITL 2 BOVINE ANTITHROMBIN III REMARK 1 REF J.MOL.BIOL. V. 210 877 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 20702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ATT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 191.55000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.65000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 287.32500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.65000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.77500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.65000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 287.32500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.65000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.65000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.77500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 191.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAIN A WHEN APPLIED TO REMARK 300 CHAIN B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE SPECIFIC N-TERMINAL EXTENSION OF ANTITHROMBIN III IS REMARK 400 TIED TO THE MOLECULE BY TWO DISULFIDE BRIDGES: CYS 9 - REMARK 400 CYS 129 (MOST PROBABLY DISORDERED IN MOLECULE B) AND REMARK 400 CYS 22 - CYS 96. AFTER THE CLEAVAGE SITE, THE C-TERMINAL REMARK 400 DOMAIN IS LINKED TO THE MOLECULE BY THE DISULFIDE BOND REMARK 400 CYS 248 - CYS 431. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 GLU A 28 REMARK 465 LYS A 29 REMARK 465 LYS A 30 REMARK 465 ASN A 397 REMARK 465 SER A 398 REMARK 465 ASP A 399 REMARK 465 VAL B 5 REMARK 465 GLU B 6 REMARK 465 ASP B 7 REMARK 465 VAL B 8 REMARK 465 CYS B 9 REMARK 465 THR B 10 REMARK 465 ALA B 11 REMARK 465 GLU B 28 REMARK 465 LYS B 29 REMARK 465 LYS B 30 REMARK 465 ALA B 31 REMARK 465 THR B 32 REMARK 465 GLU B 33 REMARK 465 GLY B 34 REMARK 465 GLN B 35 REMARK 465 GLY B 36 REMARK 465 SER B 37 REMARK 465 GLU B 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 396 CA C O CB CG CD1 CD2 REMARK 470 LEU B 396 CA C O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 66 NE2 HIS A 66 CD2 -0.076 REMARK 500 HIS A 121 NE2 HIS A 121 CD2 -0.082 REMARK 500 HIS A 320 NE2 HIS A 320 CD2 -0.075 REMARK 500 HIS A 370 NE2 HIS A 370 CD2 -0.072 REMARK 500 HIS B 58 NE2 HIS B 58 CD2 -0.068 REMARK 500 HIS B 66 NE2 HIS B 66 CD2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 6 CA - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 PRO A 13 O - C - N ANGL. DEV. = -12.5 DEGREES REMARK 500 GLU A 38 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 ALA A 44 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 47 CA - C - N ANGL. DEV. = -20.8 DEGREES REMARK 500 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 TRP A 50 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 50 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TRP A 190 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 190 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP A 190 CG - CD2 - CE3 ANGL. DEV. = 6.0 DEGREES REMARK 500 THR A 200 CA - CB - OG1 ANGL. DEV. = -13.2 DEGREES REMARK 500 PRO A 205 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 GLU A 210 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG A 260 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 260 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 262 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 263 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 263 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 278 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 TRP A 308 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 308 CB - CG - CD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 TRP A 308 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP A 308 CG - CD2 - CE3 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 323 CB - CG - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG A 323 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU A 327 CA - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 SER A 390 CA - C - N ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 407 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU A 410 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG B 14 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 47 CB - CG - CD ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG B 47 CA - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG B 48 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 48 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP B 50 CD1 - CG - CD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 TRP B 50 CG - CD1 - NE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP B 50 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 130 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 133 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ASN B 136 CA - C - N ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG B 146 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR B 159 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 184 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 184 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TRP B 190 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 68 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 7 -167.20 54.24 REMARK 500 ALA A 11 -94.44 -16.03 REMARK 500 LYS A 12 -146.79 -143.12 REMARK 500 ASP A 15 147.64 179.00 REMARK 500 PRO A 17 35.05 -66.75 REMARK 500 ASN A 19 92.69 -166.15 REMARK 500 PRO A 20 -166.89 -73.63 REMARK 500 LYS A 40 37.31 -82.23 REMARK 500 THR A 45 -84.33 -46.10 REMARK 500 ARG A 47 73.02 -102.04 REMARK 500 ASN A 73 -3.26 -52.86 REMARK 500 ASN A 97 -106.27 53.51 REMARK 500 LYS A 108 9.74 56.10 REMARK 500 LEU A 131 -52.24 -129.72 REMARK 500 LYS A 134 82.62 -58.81 REMARK 500 ASN A 136 40.01 -74.60 REMARK 500 LYS A 137 -71.88 -154.39 REMARK 500 SER A 139 -143.11 -174.12 REMARK 500 GLU A 140 32.20 -145.20 REMARK 500 VAL A 165 -74.04 -64.57 REMARK 500 ASP A 175 68.96 -110.64 REMARK 500 ASN A 179 46.63 -93.44 REMARK 500 ASP A 201 81.53 27.60 REMARK 500 PRO A 205 -38.16 -20.40 REMARK 500 GLU A 210 -34.58 -26.66 REMARK 500 LYS A 242 160.72 -47.89 REMARK 500 VAL A 264 -159.49 -96.95 REMARK 500 SER A 267 54.89 33.84 REMARK 500 ASP A 278 22.11 18.58 REMARK 500 LEU A 289 -59.65 -28.78 REMARK 500 ASP A 303 55.89 -96.13 REMARK 500 TRP A 308 -75.25 -58.69 REMARK 500 GLU A 311 36.68 -81.39 REMARK 500 PHE A 330 -161.22 -161.32 REMARK 500 SER A 361 -73.28 -132.74 REMARK 500 ASP A 362 1.66 -65.94 REMARK 500 ARG A 394 90.07 50.78 REMARK 500 SER A 395 92.90 139.25 REMARK 500 THR A 402 140.21 75.45 REMARK 500 ASN A 419 77.22 54.60 REMARK 500 ILE A 421 98.03 -69.19 REMARK 500 ARG B 14 -20.48 -178.25 REMARK 500 ASP B 15 -76.20 -113.88 REMARK 500 ILE B 16 85.75 23.56 REMARK 500 PRO B 17 103.66 -57.04 REMARK 500 LYS B 40 109.52 77.42 REMARK 500 ALA B 44 171.22 151.25 REMARK 500 ASN B 46 34.20 -72.87 REMARK 500 ARG B 47 66.71 -110.24 REMARK 500 ASN B 73 -2.92 -44.65 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 167 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 44 10.56 REMARK 500 VAL B 18 13.24 REMARK 500 LYS B 134 -16.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ANALYSIS OF DISSOLVED CRYSTALS SHOWED THAT REMARK 999 CLEAVAGE HAD OCCURRED AT THE PEPTIDE BOND SER 395 - LEU 396 REMARK 999 (P1' - P2'). THE STRUCTURE DISPLAYS A TOPOLOGY SIMILAR TO REMARK 999 THAT OF MODIFIED ALPHA-1-ANTITRYPSIN (LOEBERMANN ET AL., J. REMARK 999 MOL. BIOL. 177, 531, 1984) WITH THE RESIDUES DELIMITING REMARK 999 THE CLEAVAGE REGION WHICH ARE FOUND AT OPPOSITE ENDS OF REMARK 999 THE MOLECULE. REMARK 999 REMARK 999 SEQUENCE ADVISORY NOTICE: REMARK 999 THE SEQUENCE PRESENTED HERE IS OF THE BOVINE REMARK 999 ANTITHROMBIN III AS REFERENCED BY H. MEJDOUB, REMARK 999 M. LE RET, Y. BOULANGER, M. MAMAN, J. CHOAY, AND REMARK 999 J. REINBOLT, J. PROTEIN CHEM., VOL. 10, REMARK 999 PAGES 205-212, 1991. DBREF 1ATT A 5 433 UNP P41361 ANT3_BOVIN 5 433 DBREF 1ATT B 5 433 UNP P41361 ANT3_BOVIN 5 433 SEQRES 1 A 429 VAL GLU ASP VAL CYS THR ALA LYS PRO ARG ASP ILE PRO SEQRES 2 A 429 VAL ASN PRO MET CYS ILE TYR ARG SER SER GLU LYS LYS SEQRES 3 A 429 ALA THR GLU GLY GLN GLY SER GLU GLN LYS ILE PRO GLY SEQRES 4 A 429 ALA THR ASN ARG ARG VAL TRP GLU LEU SER LYS ALA ASN SEQRES 5 A 429 SER HIS PHE ALA THR ALA PHE TYR GLN HIS LEU ALA ASP SEQRES 6 A 429 SER LYS ASN ASN ASN ASP ASN ILE PHE LEU SER PRO LEU SEQRES 7 A 429 SER ILE SER THR ALA PHE ALA MET THR LYS LEU GLY ALA SEQRES 8 A 429 CYS ASN ASN THR LEU THR GLN LEU MET GLU VAL PHE LYS SEQRES 9 A 429 PHE ASP THR ILE SER GLU LYS THR SER ASP GLN ILE HIS SEQRES 10 A 429 PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU TYR ARG LYS SEQRES 11 A 429 ALA ASN LYS SER SER GLU LEU VAL SER ALA ASN ARG LEU SEQRES 12 A 429 PHE GLY ASP LYS SER ILE THR PHE ASN GLU THR TYR GLN SEQRES 13 A 429 ASP ILE SER GLU VAL VAL TYR GLY ALA LYS LEU GLN PRO SEQRES 14 A 429 LEU ASP PHE LYS GLY ASN ALA GLU GLN SER ARG LEU THR SEQRES 15 A 429 ILE ASN GLN TRP ILE SER ASN LYS THR GLU GLY ARG ILE SEQRES 16 A 429 THR ASP VAL ILE PRO PRO GLN ALA ILE ASN GLU PHE THR SEQRES 17 A 429 VAL LEU VAL LEU VAL ASN THR ILE TYR PHE LYS GLY LEU SEQRES 18 A 429 TRP LYS SER LYS PHE SER PRO GLU ASN THR ARG LYS GLU SEQRES 19 A 429 LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SER VAL LEU SEQRES 20 A 429 MET MET TYR GLN GLU SER LYS PHE ARG TYR ARG ARG VAL SEQRES 21 A 429 ALA GLU SER THR GLN VAL LEU GLU LEU PRO PHE LYS GLY SEQRES 22 A 429 ASP ASP ILE THR MET VAL LEU ILE LEU PRO LYS LEU GLU SEQRES 23 A 429 LYS THR LEU ALA LYS VAL GLU GLN GLU LEU THR PRO ASP SEQRES 24 A 429 MET LEU GLN GLU TRP LEU ASP GLU LEU THR GLU THR LEU SEQRES 25 A 429 LEU VAL VAL HIS MET PRO ARG PHE ARG ILE GLU ASP SER SEQRES 26 A 429 PHE SER VAL LYS GLU GLN LEU GLN ASP MET GLY LEU GLU SEQRES 27 A 429 ASP LEU PHE SER PRO GLU LYS SER ARG LEU PRO GLY ILE SEQRES 28 A 429 VAL ALA GLU GLY ARG SER ASP LEU TYR VAL SER ASP ALA SEQRES 29 A 429 PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU GLU GLY SER SEQRES 30 A 429 GLU ALA ALA ALA SER THR VAL ILE SER ILE ALA GLY ARG SEQRES 31 A 429 SER LEU ASN SER ASP ARG VAL THR PHE LYS ALA ASN ARG SEQRES 32 A 429 PRO PHE LEU VAL LEU ILE ARG GLU VAL ALA LEU ASN THR SEQRES 33 A 429 ILE ILE PHE MET GLY ARG VAL ALA ASN PRO CYS VAL ASP SEQRES 1 B 429 VAL GLU ASP VAL CYS THR ALA LYS PRO ARG ASP ILE PRO SEQRES 2 B 429 VAL ASN PRO MET CYS ILE TYR ARG SER SER GLU LYS LYS SEQRES 3 B 429 ALA THR GLU GLY GLN GLY SER GLU GLN LYS ILE PRO GLY SEQRES 4 B 429 ALA THR ASN ARG ARG VAL TRP GLU LEU SER LYS ALA ASN SEQRES 5 B 429 SER HIS PHE ALA THR ALA PHE TYR GLN HIS LEU ALA ASP SEQRES 6 B 429 SER LYS ASN ASN ASN ASP ASN ILE PHE LEU SER PRO LEU SEQRES 7 B 429 SER ILE SER THR ALA PHE ALA MET THR LYS LEU GLY ALA SEQRES 8 B 429 CYS ASN ASN THR LEU THR GLN LEU MET GLU VAL PHE LYS SEQRES 9 B 429 PHE ASP THR ILE SER GLU LYS THR SER ASP GLN ILE HIS SEQRES 10 B 429 PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU TYR ARG LYS SEQRES 11 B 429 ALA ASN LYS SER SER GLU LEU VAL SER ALA ASN ARG LEU SEQRES 12 B 429 PHE GLY ASP LYS SER ILE THR PHE ASN GLU THR TYR GLN SEQRES 13 B 429 ASP ILE SER GLU VAL VAL TYR GLY ALA LYS LEU GLN PRO SEQRES 14 B 429 LEU ASP PHE LYS GLY ASN ALA GLU GLN SER ARG LEU THR SEQRES 15 B 429 ILE ASN GLN TRP ILE SER ASN LYS THR GLU GLY ARG ILE SEQRES 16 B 429 THR ASP VAL ILE PRO PRO GLN ALA ILE ASN GLU PHE THR SEQRES 17 B 429 VAL LEU VAL LEU VAL ASN THR ILE TYR PHE LYS GLY LEU SEQRES 18 B 429 TRP LYS SER LYS PHE SER PRO GLU ASN THR ARG LYS GLU SEQRES 19 B 429 LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SER VAL LEU SEQRES 20 B 429 MET MET TYR GLN GLU SER LYS PHE ARG TYR ARG ARG VAL SEQRES 21 B 429 ALA GLU SER THR GLN VAL LEU GLU LEU PRO PHE LYS GLY SEQRES 22 B 429 ASP ASP ILE THR MET VAL LEU ILE LEU PRO LYS LEU GLU SEQRES 23 B 429 LYS THR LEU ALA LYS VAL GLU GLN GLU LEU THR PRO ASP SEQRES 24 B 429 MET LEU GLN GLU TRP LEU ASP GLU LEU THR GLU THR LEU SEQRES 25 B 429 LEU VAL VAL HIS MET PRO ARG PHE ARG ILE GLU ASP SER SEQRES 26 B 429 PHE SER VAL LYS GLU GLN LEU GLN ASP MET GLY LEU GLU SEQRES 27 B 429 ASP LEU PHE SER PRO GLU LYS SER ARG LEU PRO GLY ILE SEQRES 28 B 429 VAL ALA GLU GLY ARG SER ASP LEU TYR VAL SER ASP ALA SEQRES 29 B 429 PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU GLU GLY SER SEQRES 30 B 429 GLU ALA ALA ALA SER THR VAL ILE SER ILE ALA GLY ARG SEQRES 31 B 429 SER LEU ASN SER ASP ARG VAL THR PHE LYS ALA ASN ARG SEQRES 32 B 429 PRO PHE LEU VAL LEU ILE ARG GLU VAL ALA LEU ASN THR SEQRES 33 B 429 ILE ILE PHE MET GLY ARG VAL ALA ASN PRO CYS VAL ASP HELIX 1 AA ARG A 47 LYS A 71 1 25 HELIX 2 AB SER A 80 LYS A 92 1 13 HELIX 3 AC ASN A 97 PHE A 107 1 11 HELIX 4 AC1 LYS A 108 ILE A 112 5 5 HELIX 5 AD THR A 116 ARG A 130 1 15 HELIX 6 AE ASN A 156 TYR A 167 1 12 HELIX 7 AF ASN A 179 THR A 195 1 17 HELIX 8 AF1 SER A 231 ASN A 234 5 4 HELIX 9 AG THR A 292 GLU A 299 1 8 HELIX 10 AH MET A 304 GLU A 311 1 8 HELIX 11 AI VAL A 332 GLY A 340 1 9 HELIX 12 AI1 GLU A 342 SER A 346 5 5 HELIX 13 BA ARG B 47 LYS B 71 1 25 HELIX 14 BB SER B 80 LYS B 92 1 13 HELIX 15 BC ASN B 97 PHE B 107 1 11 HELIX 16 BC1 LYS B 108 ILE B 112 5 5 HELIX 17 BD THR B 116 ARG B 130 1 15 HELIX 18 BE ASN B 156 TYR B 167 1 12 HELIX 19 BF ASN B 179 THR B 195 1 17 HELIX 20 BF1 SER B 231 ASN B 234 5 4 HELIX 21 BG THR B 292 GLU B 299 1 8 HELIX 22 BH MET B 304 GLU B 311 1 8 HELIX 23 BI VAL B 332 GLY B 340 1 9 HELIX 24 BI1 GLU B 342 SER B 346 5 5 SHEET 1 AA 6 ALA A 169 ASP A 175 0 SHEET 2 AA 6 GLU A 140 ASP A 150 1 SHEET 3 AA 6 VAL A 213 TRP A 226 -1 SHEET 4 AA 6 GLU A 379 GLY A 393 -1 SHEET 5 AA 6 ASP A 362 GLU A 378 -1 SHEET 6 AA 6 ARG A 323 VAL A 332 -1 SHEET 1 BA 6 ARG A 260 ALA A 265 0 SHEET 2 BA 6 SER A 267 PHE A 275 -1 SHEET 3 BA 6 ASP A 279 LYS A 288 -1 SHEET 4 BA 6 PRO A 408 VAL A 416 -1 SHEET 5 BA 6 ASN A 419 ALA A 428 -1 SHEET 6 BA 6 ASN A 76 SER A 80 -1 SHEET 1 CA 4 THR A 402 ALA A 405 0 SHEET 2 CA 4 THR A 315 PRO A 322 1 SHEET 3 CA 4 GLY A 245 LYS A 258 -1 SHEET 4 CA 4 ASN A 234 LYS A 242 -1 SHEET 1 AB 6 ALA B 169 ASP B 175 0 SHEET 2 AB 6 GLU B 140 ASP B 150 1 SHEET 3 AB 6 VAL B 213 TRP B 226 -1 SHEET 4 AB 6 GLU B 379 GLY B 393 -1 SHEET 5 AB 6 ASP B 362 GLU B 378 -1 SHEET 6 AB 6 ARG B 323 VAL B 332 -1 SHEET 1 BB 6 ARG B 260 ALA B 265 0 SHEET 2 BB 6 SER B 267 PHE B 275 -1 SHEET 3 BB 6 ASP B 279 LYS B 288 -1 SHEET 4 BB 6 PRO B 408 VAL B 416 -1 SHEET 5 BB 6 ASN B 419 ALA B 428 -1 SHEET 6 BB 6 ASN B 76 SER B 80 -1 SHEET 1 CB 4 THR B 402 ALA B 405 0 SHEET 2 CB 4 THR B 315 PRO B 322 1 SHEET 3 CB 4 GLY B 245 LYS B 258 -1 SHEET 4 CB 4 ASN B 234 LYS B 242 -1 SSBOND 1 CYS A 9 CYS A 129 1555 1555 2.00 SSBOND 2 CYS A 22 CYS A 96 1555 1555 2.42 SSBOND 3 CYS A 248 CYS A 431 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 96 1555 1555 2.01 SSBOND 5 CYS B 248 CYS B 431 1555 1555 2.02 CRYST1 91.300 91.300 383.100 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002610 0.00000 MTRIX1 1 0.078680 -0.995270 -0.057000 170.40390 1 MTRIX2 1 -0.046690 -0.060790 0.997060 -258.82590 1 MTRIX3 1 -0.995810 -0.075780 -0.051250 371.64853 1