data_1AUL
#
_entry.id 1AUL
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1AUL pdb_00001aul 10.2210/pdb1aul/pdb
WWPDB D_1000171277 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1997-12-24
2 'Structure model' 1 1 2008-03-24
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2022-02-16
5 'Structure model' 1 4 2024-05-22
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Database references'
4 4 'Structure model' 'Derived calculations'
5 4 'Structure model' Other
6 4 'Structure model' 'Structure summary'
7 5 'Structure model' 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp
2 4 'Structure model' database_2
3 4 'Structure model' pdbx_database_status
4 4 'Structure model' pdbx_struct_assembly
5 4 'Structure model' pdbx_struct_oper_list
6 4 'Structure model' struct_conn
7 5 'Structure model' chem_comp_atom
8 5 'Structure model' chem_comp_bond
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_chem_comp.name'
2 4 'Structure model' '_database_2.pdbx_DOI'
3 4 'Structure model' '_database_2.pdbx_database_accession'
4 4 'Structure model' '_pdbx_database_status.process_site'
5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1AUL
_pdbx_database_status.recvd_initial_deposition_date 1997-08-29
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Kumar, S.' 1
'Reed, M.W.' 2
'Gamper Junior, H.B.' 3
'Gorn, V.V.' 4
'Lukhtanov, E.A.' 5
'Foti, M.' 6
'West, J.' 7
'Meyer Junior, R.B.' 8
'Schweitzer, B.I.' 9
#
_citation.id primary
_citation.title 'Solution structure of a highly stable DNA duplex conjugated to a minor groove binder.'
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_volume 26
_citation.page_first 831
_citation.page_last 838
_citation.year 1998
_citation.journal_id_ASTM NARHAD
_citation.country UK
_citation.journal_id_ISSN 0305-1048
_citation.journal_id_CSD 0389
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 9443977
_citation.pdbx_database_id_DOI 10.1093/nar/26.3.831
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Kumar, S.' 1 ?
primary 'Reed, M.W.' 2 ?
primary 'Gamper Jr., H.B.' 3 ?
primary 'Gorn, V.V.' 4 ?
primary 'Lukhtanov, E.A.' 5 ?
primary 'Foti, M.' 6 ?
primary 'West, J.' 7 ?
primary 'Meyer Jr., R.B.' 8 ?
primary 'Schweitzer, B.I.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(P*THXP*GP*AP*TP*TP*AP*TP*CP*TP*G)-3')
;
3744.794 1 ? ? ? 'TRIPEPTIDE CDPI3 IS COVALENTLY LINKED TO THE T1 DNA RESIDUE WITH A HEXAMETHYLENE LINKER'
2 polymer syn
;DNA (5'-D(*CP*AP*GP*AP*TP*AP*AP*TP*CP*A)-3')
;
3037.032 1 ? ? ? 'TRIPEPTIDE CDPI3 IS COVALENTLY LINKED TO THE T1 DNA RESIDUE WITH A HEXAMETHYLENE LINKER'
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no yes '(THX)(DG)(DA)(DT)(DT)(DA)(DT)(DC)(DT)(DG)' NGATTATCTG A ?
2 polydeoxyribonucleotide no no '(DC)(DA)(DG)(DA)(DT)(DA)(DA)(DT)(DC)(DA)' CAGATAATCA B ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THX n
1 2 DG n
1 3 DA n
1 4 DT n
1 5 DT n
1 6 DA n
1 7 DT n
1 8 DC n
1 9 DT n
1 10 DG n
2 1 DC n
2 2 DA n
2 3 DG n
2 4 DA n
2 5 DT n
2 6 DA n
2 7 DA n
2 8 DT n
2 9 DC n
2 10 DA n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample ? ? ? ? ?
;CDPI3 COVALENTLY LINKED TO 5' END OF DNA STRAND A WITH A HEXAMETHYLENE LINKER
;
2 1 sample ? ? ? ? ?
;CDPI3 COVALENTLY LINKED TO 5' END OF DNA STRAND A WITH A HEXAMETHYLENE LINKER
;
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
THX 'DNA linking' .
;PHOSPHONIC ACID 6-({6-[6-(6-CARBAMOYL-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDOCENE-2-CA RBONYL]-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBONL}-AMINO)-HEXYL ESTER 5-(5-METHYL-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-TETRAHYDRO-FURAN-2-YLMETHYL ESTER
;
CDPI3 'C50 H53 N10 O12 P' 1016.989
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THX 1 1 1 THX THX A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DT 5 5 5 DT T A . n
A 1 6 DA 6 6 6 DA A A . n
A 1 7 DT 7 7 7 DT T A . n
A 1 8 DC 8 8 8 DC C A . n
A 1 9 DT 9 9 9 DT T A . n
A 1 10 DG 10 10 10 DG G A . n
B 2 1 DC 1 11 11 DC C B . n
B 2 2 DA 2 12 12 DA A B . n
B 2 3 DG 3 13 13 DG G B . n
B 2 4 DA 4 14 14 DA A B . n
B 2 5 DT 5 15 15 DT T B . n
B 2 6 DA 6 16 16 DA A B . n
B 2 7 DA 7 17 17 DA A B . n
B 2 8 DT 8 18 18 DT T B . n
B 2 9 DC 9 19 19 DC C B . n
B 2 10 DA 10 20 20 DA A B . n
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
X-PLOR 'model building' 3.1 ? 1
X-PLOR refinement 3.1 ? 2
X-PLOR phasing 3.1 ? 3
#
_cell.entry_id 1AUL
_cell.length_a 1.000
_cell.length_b 1.000
_cell.length_c 1.000
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 1
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1AUL
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
#
_exptl.entry_id 1AUL
_exptl.method 'SOLUTION NMR'
_exptl.crystals_number ?
#
_database_PDB_matrix.entry_id 1AUL
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1AUL
_struct.title
'SOLUTION STRUCTURE OF A HIGHLY STABLE DNA DUPLEX CONJUGATED TO A MINOR GROOVE BINDER, NMR, MINIMIZED AVERAGE STRUCTURE'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1AUL
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DEOXYRIBONUCLEIC ACID, CDPI3, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 1 PDB 1AUL 1AUL ? ? ?
2 2 PDB 1AUL 1AUL ? ? ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1AUL A 1 ? 10 ? 1AUL 1 ? 10 ? 1 10
2 2 1AUL B 1 ? 10 ? 1AUL 11 ? 20 ? 11 20
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? A THX 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A THX 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.734 ? ?
hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ?
hydrog2 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 4 B DA 16 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ?
hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 9 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 9 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O4 A THX 1 ? ? H61 B DA 20 ? ? 1.39
2 1 H3 A THX 1 ? ? N1 B DA 20 ? ? 1.57
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O3'" A THX 1 ? ? P A DG 2 ? ? 1.734 1.607 0.127 0.012 Y
2 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.742 1.593 0.149 0.010 N
3 1 "O3'" A DG 2 ? ? P A DA 3 ? ? 1.730 1.607 0.123 0.012 Y
4 1 P A DA 3 ? ? "O5'" A DA 3 ? ? 1.726 1.593 0.133 0.010 N
5 1 N9 A DA 3 ? ? C4 A DA 3 ? ? 1.332 1.374 -0.042 0.006 N
6 1 "O3'" A DA 3 ? ? P A DT 4 ? ? 1.731 1.607 0.124 0.012 Y
7 1 P A DT 4 ? ? "O5'" A DT 4 ? ? 1.733 1.593 0.140 0.010 N
8 1 "O3'" A DT 4 ? ? P A DT 5 ? ? 1.725 1.607 0.118 0.012 Y
9 1 P A DT 5 ? ? "O5'" A DT 5 ? ? 1.716 1.593 0.123 0.010 N
10 1 "O3'" A DT 5 ? ? P A DA 6 ? ? 1.722 1.607 0.115 0.012 Y
11 1 P A DA 6 ? ? "O5'" A DA 6 ? ? 1.727 1.593 0.134 0.010 N
12 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? 1.652 1.518 0.134 0.012 N
13 1 "O3'" A DA 6 ? ? P A DT 7 ? ? 1.729 1.607 0.122 0.012 Y
14 1 P A DT 7 ? ? "O5'" A DT 7 ? ? 1.730 1.593 0.137 0.010 N
15 1 "O3'" A DT 7 ? ? P A DC 8 ? ? 1.734 1.607 0.127 0.012 Y
16 1 P A DC 8 ? ? "O5'" A DC 8 ? ? 1.733 1.593 0.140 0.010 N
17 1 "O3'" A DC 8 ? ? P A DT 9 ? ? 1.730 1.607 0.123 0.012 Y
18 1 P A DT 9 ? ? "O5'" A DT 9 ? ? 1.726 1.593 0.133 0.010 N
19 1 "C2'" A DT 9 ? ? "C1'" A DT 9 ? ? 1.589 1.519 0.070 0.010 N
20 1 "O3'" A DT 9 ? ? P A DG 10 ? ? 1.732 1.607 0.125 0.012 Y
21 1 P A DG 10 ? ? "O5'" A DG 10 ? ? 1.732 1.593 0.139 0.010 N
22 1 "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 1.584 1.519 0.065 0.010 N
23 1 "O3'" B DC 11 ? ? P B DA 12 ? ? 1.737 1.607 0.130 0.012 Y
24 1 P B DA 12 ? ? "O5'" B DA 12 ? ? 1.733 1.593 0.140 0.010 N
25 1 "O3'" B DA 12 ? ? P B DG 13 ? ? 1.726 1.607 0.119 0.012 Y
26 1 P B DG 13 ? ? "O5'" B DG 13 ? ? 1.727 1.593 0.134 0.010 N
27 1 "O3'" B DG 13 ? ? P B DA 14 ? ? 1.728 1.607 0.121 0.012 Y
28 1 P B DA 14 ? ? "O5'" B DA 14 ? ? 1.726 1.593 0.133 0.010 N
29 1 "O3'" B DA 14 ? ? P B DT 15 ? ? 1.731 1.607 0.124 0.012 Y
30 1 P B DT 15 ? ? "O5'" B DT 15 ? ? 1.736 1.593 0.143 0.010 N
31 1 "O3'" B DT 15 ? ? P B DA 16 ? ? 1.728 1.607 0.121 0.012 Y
32 1 P B DA 16 ? ? "O5'" B DA 16 ? ? 1.730 1.593 0.137 0.010 N
33 1 "C2'" B DA 16 ? ? "C1'" B DA 16 ? ? 1.581 1.519 0.062 0.010 N
34 1 "O3'" B DA 16 ? ? P B DA 17 ? ? 1.723 1.607 0.116 0.012 Y
35 1 P B DA 17 ? ? "O5'" B DA 17 ? ? 1.718 1.593 0.125 0.010 N
36 1 "O3'" B DA 17 ? ? P B DT 18 ? ? 1.724 1.607 0.117 0.012 Y
37 1 P B DT 18 ? ? "O5'" B DT 18 ? ? 1.744 1.593 0.151 0.010 N
38 1 "O3'" B DT 18 ? ? P B DC 19 ? ? 1.752 1.607 0.145 0.012 Y
39 1 P B DC 19 ? ? "O5'" B DC 19 ? ? 1.738 1.593 0.145 0.010 N
40 1 "C2'" B DC 19 ? ? "C1'" B DC 19 ? ? 1.601 1.519 0.082 0.010 N
41 1 "O3'" B DC 19 ? ? P B DA 20 ? ? 1.736 1.607 0.129 0.012 Y
42 1 P B DA 20 ? ? "O5'" B DA 20 ? ? 1.726 1.593 0.133 0.010 N
43 1 "C3'" B DA 20 ? ? "C2'" B DA 20 ? ? 1.593 1.518 0.075 0.012 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.88 128.60 -3.72 0.60 N
2 1 C5 B DG 13 ? ? C6 B DG 13 ? ? O6 B DG 13 ? ? 124.88 128.60 -3.72 0.60 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DC B 19 ? ? 0.072 'SIDE CHAIN'
2 1 DA B 20 ? ? 0.059 'SIDE CHAIN'
#
_pdbx_validate_polymer_linkage.id 1
_pdbx_validate_polymer_linkage.PDB_model_num 1
_pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'"
_pdbx_validate_polymer_linkage.auth_asym_id_1 B
_pdbx_validate_polymer_linkage.auth_comp_id_1 DT
_pdbx_validate_polymer_linkage.auth_seq_id_1 18
_pdbx_validate_polymer_linkage.PDB_ins_code_1 ?
_pdbx_validate_polymer_linkage.label_alt_id_1 ?
_pdbx_validate_polymer_linkage.auth_atom_id_2 P
_pdbx_validate_polymer_linkage.auth_asym_id_2 B
_pdbx_validate_polymer_linkage.auth_comp_id_2 DC
_pdbx_validate_polymer_linkage.auth_seq_id_2 19
_pdbx_validate_polymer_linkage.PDB_ins_code_2 ?
_pdbx_validate_polymer_linkage.label_alt_id_2 ?
_pdbx_validate_polymer_linkage.dist 1.75
#
_pdbx_nmr_ensemble.entry_id 1AUL
_pdbx_nmr_ensemble.conformers_calculated_total_number 6
_pdbx_nmr_ensemble.conformers_submitted_total_number 1
_pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION'
#
_pdbx_nmr_exptl_sample_conditions.conditions_id 1
_pdbx_nmr_exptl_sample_conditions.temperature 293.15
_pdbx_nmr_exptl_sample_conditions.pressure ?
_pdbx_nmr_exptl_sample_conditions.pH 6.0
_pdbx_nmr_exptl_sample_conditions.ionic_strength ?
_pdbx_nmr_exptl_sample_conditions.pressure_units .
_pdbx_nmr_exptl_sample_conditions.temperature_units K
#
loop_
_pdbx_nmr_exptl.experiment_id
_pdbx_nmr_exptl.conditions_id
_pdbx_nmr_exptl.type
_pdbx_nmr_exptl.solution_id
1 1 NOESY 1
2 1 DQF-COSY 1
3 1 HETEROTOCSY 1
4 1 TOCSY 1
#
_pdbx_nmr_refine.entry_id 1AUL
_pdbx_nmr_refine.method 'RESTRAINED MOLECULAR DYNAMICS/RELAXATION MATRIX REFINEMENT'
_pdbx_nmr_refine.details
;CANONICAL B-TYPE STRUCTURE USED IN RESTRAINED MOLECULAR DYNAMICS CALCULATIONS GENERATING SIX STRUCTURES FROM DIFFERENT RANDOM NUMBER SEEDS. THE SIX STRUCTURES WERE SUBJECTED TO RELAXATION MATRIX REFINEMENT TO GENERATE THE SIX FINAL STRUCTURES. THESE SIX STRUCTURES WERE AVERAGED AND MINIMIZED TO GIVE THE FINAL STRUCTURE PRESENTED HERE.
;
_pdbx_nmr_refine.software_ordinal 1
#
loop_
_pdbx_nmr_software.classification
_pdbx_nmr_software.name
_pdbx_nmr_software.version
_pdbx_nmr_software.authors
_pdbx_nmr_software.ordinal
refinement X-PLOR ? BRUNGER 1
'structure solution' X-PLOR 3.1 ? 2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
THX "C1'" C N R 144
THX C10 C N N 145
THX C11 C N N 146
THX C12 C N N 147
THX C13 C N N 148
THX C14 C Y N 149
THX C15 C Y N 150
THX C16 C Y N 151
THX C17 C Y N 152
THX C18 C Y N 153
THX C19 C Y N 154
THX C2 C N N 155
THX "C2'" C N N 156
THX C20 C Y N 157
THX C21 C Y N 158
THX C22 C N N 159
THX C23 C N N 160
THX C24 C N N 161
THX C25 C Y N 162
THX C26 C Y N 163
THX C27 C Y N 164
THX C28 C Y N 165
THX C29 C Y N 166
THX "C3'" C N S 167
THX C30 C Y N 168
THX C31 C Y N 169
THX C32 C Y N 170
THX C33 C N N 171
THX C34 C N N 172
THX C35 C N N 173
THX C36 C Y N 174
THX C37 C Y N 175
THX C38 C Y N 176
THX C39 C Y N 177
THX C4 C N N 178
THX "C4'" C N R 179
THX C40 C Y N 180
THX C41 C Y N 181
THX C42 C Y N 182
THX C43 C Y N 183
THX C44 C N N 184
THX C45 C N N 185
THX C46 C N N 186
THX C5 C N N 187
THX "C5'" C N N 188
THX C5M C N N 189
THX C6 C N N 190
THX C7 C N N 191
THX C8 C N N 192
THX C9 C N N 193
THX N1 N N N 194
THX N10 N N N 195
THX N15 N N N 196
THX N3 N N N 197
THX N4 N N N 198
THX N5 N Y N 199
THX N6 N N N 200
THX N7 N Y N 201
THX N8 N N N 202
THX N9 N Y N 203
THX O1P O N N 204
THX O2 O N N 205
THX O2P O N N 206
THX "O3'" O N N 207
THX O3P O N N 208
THX O4 O N N 209
THX "O4'" O N N 210
THX "O5'" O N N 211
THX O6 O N N 212
THX O7 O N N 213
THX O8 O N N 214
THX O9 O N N 215
THX P P N S 216
THX "H1'" H N N 217
THX H101 H N N 218
THX H102 H N N 219
THX H111 H N N 220
THX H112 H N N 221
THX H121 H N N 222
THX H122 H N N 223
THX H15 H N N 224
THX H18 H N N 225
THX H19 H N N 226
THX "H2'1" H N N 227
THX "H2'2" H N N 228
THX H221 H N N 229
THX H222 H N N 230
THX H231 H N N 231
THX H232 H N N 232
THX H26 H N N 233
THX H29 H N N 234
THX "H3'" H N N 235
THX H30 H N N 236
THX H331 H N N 237
THX H332 H N N 238
THX H341 H N N 239
THX H342 H N N 240
THX H37 H N N 241
THX "H4'" H N N 242
THX H40 H N N 243
THX H41 H N N 244
THX H441 H N N 245
THX H442 H N N 246
THX H451 H N N 247
THX H452 H N N 248
THX "H5'1" H N N 249
THX "H5'2" H N N 250
THX H5M1 H N N 251
THX H5M2 H N N 252
THX H5M3 H N N 253
THX H6 H N N 254
THX H71 H N N 255
THX H72 H N N 256
THX H81 H N N 257
THX H82 H N N 258
THX H91 H N N 259
THX H92 H N N 260
THX H151 H N N 261
THX H152 H N N 262
THX H3 H N N 263
THX HN4 H N N 264
THX HN5 H N N 265
THX HN7 H N N 266
THX HN9 H N N 267
THX HOP2 H N N 268
THX "HO'3" H N N 269
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
THX "C1'" "C2'" sing N N 150
THX "C1'" N1 sing N N 151
THX "C1'" "O4'" sing N N 152
THX "C1'" "H1'" sing N N 153
THX C10 C11 sing N N 154
THX C10 C9 sing N N 155
THX C10 H101 sing N N 156
THX C10 H102 sing N N 157
THX C11 C12 sing N N 158
THX C11 H111 sing N N 159
THX C11 H112 sing N N 160
THX C12 N4 sing N N 161
THX C12 H121 sing N N 162
THX C12 H122 sing N N 163
THX C13 C14 sing N N 164
THX C13 N4 sing N N 165
THX C13 O6 doub N N 166
THX C14 C15 doub Y N 167
THX C14 N5 sing Y N 168
THX C15 C16 sing Y N 169
THX C15 H15 sing N N 170
THX C16 C17 sing Y N 171
THX C16 C21 doub Y N 172
THX C17 C18 doub Y N 173
THX C17 N5 sing Y N 174
THX C18 C19 sing Y N 175
THX C18 H18 sing N N 176
THX C19 C20 doub Y N 177
THX C19 H19 sing N N 178
THX C2 N1 sing N N 179
THX C2 N3 sing N N 180
THX C2 O2 doub N N 181
THX "C2'" "C3'" sing N N 182
THX "C2'" "H2'1" sing N N 183
THX "C2'" "H2'2" sing N N 184
THX C20 C21 sing Y N 185
THX C20 N6 sing N N 186
THX C21 C22 sing N N 187
THX C22 C23 sing N N 188
THX C22 H221 sing N N 189
THX C22 H222 sing N N 190
THX C23 N6 sing N N 191
THX C23 H231 sing N N 192
THX C23 H232 sing N N 193
THX C24 C25 sing N N 194
THX C24 N6 sing N N 195
THX C24 O7 doub N N 196
THX C25 C26 doub Y N 197
THX C25 N7 sing Y N 198
THX C26 C27 sing Y N 199
THX C26 H26 sing N N 200
THX C27 C28 sing Y N 201
THX C27 C32 doub Y N 202
THX C28 C29 doub Y N 203
THX C28 N7 sing Y N 204
THX C29 C30 sing Y N 205
THX C29 H29 sing N N 206
THX "C3'" "C4'" sing N N 207
THX "C3'" "O3'" sing N N 208
THX "C3'" "H3'" sing N N 209
THX C30 C31 doub Y N 210
THX C30 H30 sing N N 211
THX C31 C32 sing Y N 212
THX C31 N8 sing N N 213
THX C32 C33 sing N N 214
THX C33 C34 sing N N 215
THX C33 H331 sing N N 216
THX C33 H332 sing N N 217
THX C34 N8 sing N N 218
THX C34 H341 sing N N 219
THX C34 H342 sing N N 220
THX C35 C36 sing N N 221
THX C35 N8 sing N N 222
THX C35 O8 doub N N 223
THX C36 C37 doub Y N 224
THX C36 N9 sing Y N 225
THX C37 C38 sing Y N 226
THX C37 H37 sing N N 227
THX C38 C39 sing Y N 228
THX C38 C43 doub Y N 229
THX C39 C40 doub Y N 230
THX C39 N9 sing Y N 231
THX C4 C5 sing N N 232
THX C4 N3 sing N N 233
THX C4 O4 doub N N 234
THX "C4'" "C5'" sing N N 235
THX "C4'" "O4'" sing N N 236
THX "C4'" "H4'" sing N N 237
THX C40 C41 sing Y N 238
THX C40 H40 sing N N 239
THX C41 C42 doub Y N 240
THX C41 H41 sing N N 241
THX C42 C43 sing Y N 242
THX C42 N10 sing N N 243
THX C43 C44 sing N N 244
THX C44 C45 sing N N 245
THX C44 H441 sing N N 246
THX C44 H442 sing N N 247
THX C45 N10 sing N N 248
THX C45 H451 sing N N 249
THX C45 H452 sing N N 250
THX C46 N10 sing N N 251
THX C46 N15 sing N N 252
THX C46 O9 doub N N 253
THX C5 C5M sing N N 254
THX C5 C6 doub N N 255
THX "C5'" "O5'" sing N N 256
THX "C5'" "H5'1" sing N N 257
THX "C5'" "H5'2" sing N N 258
THX C5M H5M1 sing N N 259
THX C5M H5M2 sing N N 260
THX C5M H5M3 sing N N 261
THX C6 N1 sing N N 262
THX C6 H6 sing N N 263
THX C7 C8 sing N N 264
THX C7 O3P sing N N 265
THX C7 H71 sing N N 266
THX C7 H72 sing N N 267
THX C8 C9 sing N N 268
THX C8 H81 sing N N 269
THX C8 H82 sing N N 270
THX C9 H91 sing N N 271
THX C9 H92 sing N N 272
THX N15 H151 sing N N 273
THX N15 H152 sing N N 274
THX N3 H3 sing N N 275
THX N4 HN4 sing N N 276
THX N5 HN5 sing N N 277
THX N7 HN7 sing N N 278
THX N9 HN9 sing N N 279
THX O1P P doub N N 280
THX O2P P sing N N 281
THX O2P HOP2 sing N N 282
THX "O3'" "HO'3" sing N N 283
THX O3P P sing N N 284
THX "O5'" P sing N N 285
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
1AUL 'double helix'
1AUL 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 2 1_555 B DC 9 1_555 0.840 0.149 0.941 0.709 7.219 26.294 1 A_DG2:DC19_B A 2 ? B 19 ? ? 1
1 A DA 3 1_555 B DT 8 1_555 -1.088 -0.539 0.744 3.244 -20.653 14.693 2 A_DA3:DT18_B A 3 ? B 18 ? 20 1
1 A DT 4 1_555 B DA 7 1_555 0.144 -0.460 1.258 -24.666 -11.516 14.899 3 A_DT4:DA17_B A 4 ? B 17 ? 20 1
1 A DT 5 1_555 B DA 6 1_555 -0.283 -0.212 0.534 -9.415 -1.416 4.457 4 A_DT5:DA16_B A 5 ? B 16 ? 20 1
1 A DA 6 1_555 B DT 5 1_555 0.467 -0.077 -0.465 -1.083 -6.569 -6.322 5 A_DA6:DT15_B A 6 ? B 15 ? 20 1
1 A DT 7 1_555 B DA 4 1_555 -0.175 -0.122 -0.590 16.877 -14.113 1.194 6 A_DT7:DA14_B A 7 ? B 14 ? 20 1
1 A DC 8 1_555 B DG 3 1_555 0.684 -0.242 -0.424 7.590 -8.338 3.882 7 A_DC8:DG13_B A 8 ? B 13 ? 19 1
1 A DT 9 1_555 B DA 2 1_555 0.400 -0.259 0.176 9.588 -7.991 -5.710 8 A_DT9:DA12_B A 9 ? B 12 ? 20 1
1 A DG 10 1_555 B DC 1 1_555 -0.616 -0.342 0.206 6.923 1.045 -3.536 9 A_DG10:DC11_B A 10 ? B 11 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 0.023 -0.895 3.171 9.932 7.125 26.185 -3.287 2.032 2.674 14.748
-20.557 28.852 1 AA_DG2DA3:DT18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ?
1 A DA 3 1_555 B DT 8 1_555 A DT 4 1_555 B DA 7 1_555 0.458 -0.197 4.347 -0.655 9.642 41.736 -1.545 -0.715 4.196 13.320 0.905
42.791 2 AA_DA3DT4:DA17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ?
1 A DT 4 1_555 B DA 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.064 -0.560 3.031 3.245 3.791 29.174 -1.830 0.755 2.913 7.458 -6.383
29.589 3 AA_DT4DT5:DA16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ?
1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.531 -1.104 2.762 10.725 6.010 33.881 -2.467 2.074 2.273 9.916
-17.696 35.981 4 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ?
1 A DA 6 1_555 B DT 5 1_555 A DT 7 1_555 B DA 4 1_555 0.506 -0.384 2.782 -0.186 6.151 34.183 -1.435 -0.871 2.672 10.360 0.313
34.716 5 AA_DA6DT7:DA14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ?
1 A DT 7 1_555 B DA 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.478 -0.453 3.388 0.019 11.535 37.015 -2.124 0.723 3.115 17.651 -0.029
38.710 6 AA_DT7DC8:DG13DA14_BB A 7 ? B 14 ? A 8 ? B 13 ?
1 A DC 8 1_555 B DG 3 1_555 A DT 9 1_555 B DA 2 1_555 -0.102 -0.869 3.505 -4.169 -5.778 36.846 -0.524 -0.439 3.586 -9.038 6.521
37.505 7 AA_DC8DT9:DA12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ?
1 A DT 9 1_555 B DA 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.705 -1.955 2.927 -10.600 2.490 28.346 -4.194 -0.595 2.824 4.864 20.704
30.325 8 AA_DT9DG10:DC11DA12_BB A 9 ? B 12 ? A 10 ? B 11 ?
#
_pdbx_nmr_spectrometer.spectrometer_id 1
_pdbx_nmr_spectrometer.model UNITYPLUS
_pdbx_nmr_spectrometer.manufacturer Varian
_pdbx_nmr_spectrometer.field_strength 600
#
_atom_sites.entry_id 1AUL
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
H
N
O
P
#
loop_