data_1AUL
# 
_entry.id   1AUL 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.392 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1AUL         pdb_00001aul 10.2210/pdb1aul/pdb 
WWPDB D_1000171277 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1997-12-24 
2 'Structure model' 1 1 2008-03-24 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2022-02-16 
5 'Structure model' 1 4 2024-05-22 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Database references'       
4 4 'Structure model' 'Derived calculations'      
5 4 'Structure model' Other                       
6 4 'Structure model' 'Structure summary'         
7 5 'Structure model' 'Data collection'           
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp             
2 4 'Structure model' database_2            
3 4 'Structure model' pdbx_database_status  
4 4 'Structure model' pdbx_struct_assembly  
5 4 'Structure model' pdbx_struct_oper_list 
6 4 'Structure model' struct_conn           
7 5 'Structure model' chem_comp_atom        
8 5 'Structure model' chem_comp_bond        
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_chem_comp.name'                     
2 4 'Structure model' '_database_2.pdbx_DOI'                
3 4 'Structure model' '_database_2.pdbx_database_accession' 
4 4 'Structure model' '_pdbx_database_status.process_site'  
5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1AUL 
_pdbx_database_status.recvd_initial_deposition_date   1997-08-29 
_pdbx_database_status.deposit_site                    ? 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Kumar, S.'           1 
'Reed, M.W.'          2 
'Gamper Junior, H.B.' 3 
'Gorn, V.V.'          4 
'Lukhtanov, E.A.'     5 
'Foti, M.'            6 
'West, J.'            7 
'Meyer Junior, R.B.'  8 
'Schweitzer, B.I.'    9 
# 
_citation.id                        primary 
_citation.title                     'Solution structure of a highly stable DNA duplex conjugated to a minor groove binder.' 
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_volume            26 
_citation.page_first                831 
_citation.page_last                 838 
_citation.year                      1998 
_citation.journal_id_ASTM           NARHAD 
_citation.country                   UK 
_citation.journal_id_ISSN           0305-1048 
_citation.journal_id_CSD            0389 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   9443977 
_citation.pdbx_database_id_DOI      10.1093/nar/26.3.831 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Kumar, S.'        1 ? 
primary 'Reed, M.W.'       2 ? 
primary 'Gamper Jr., H.B.' 3 ? 
primary 'Gorn, V.V.'       4 ? 
primary 'Lukhtanov, E.A.'  5 ? 
primary 'Foti, M.'         6 ? 
primary 'West, J.'         7 ? 
primary 'Meyer Jr., R.B.'  8 ? 
primary 'Schweitzer, B.I.' 9 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA (5'-D(P*THXP*GP*AP*TP*TP*AP*TP*CP*TP*G)-3')
;
3744.794 1 ? ? ? 'TRIPEPTIDE CDPI3 IS COVALENTLY LINKED TO THE T1 DNA RESIDUE WITH A HEXAMETHYLENE LINKER' 
2 polymer syn 
;DNA (5'-D(*CP*AP*GP*AP*TP*AP*AP*TP*CP*A)-3')
;
3037.032 1 ? ? ? 'TRIPEPTIDE CDPI3 IS COVALENTLY LINKED TO THE T1 DNA RESIDUE WITH A HEXAMETHYLENE LINKER' 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no yes '(THX)(DG)(DA)(DT)(DT)(DA)(DT)(DC)(DT)(DG)' NGATTATCTG A ? 
2 polydeoxyribonucleotide no no  '(DC)(DA)(DG)(DA)(DT)(DA)(DA)(DT)(DC)(DA)'  CAGATAATCA B ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  THX n 
1 2  DG  n 
1 3  DA  n 
1 4  DT  n 
1 5  DT  n 
1 6  DA  n 
1 7  DT  n 
1 8  DC  n 
1 9  DT  n 
1 10 DG  n 
2 1  DC  n 
2 2  DA  n 
2 3  DG  n 
2 4  DA  n 
2 5  DT  n 
2 6  DA  n 
2 7  DA  n 
2 8  DT  n 
2 9  DC  n 
2 10 DA  n 
# 
loop_
_pdbx_entity_src_syn.entity_id 
_pdbx_entity_src_syn.pdbx_src_id 
_pdbx_entity_src_syn.pdbx_alt_source_flag 
_pdbx_entity_src_syn.pdbx_beg_seq_num 
_pdbx_entity_src_syn.pdbx_end_seq_num 
_pdbx_entity_src_syn.organism_scientific 
_pdbx_entity_src_syn.organism_common_name 
_pdbx_entity_src_syn.ncbi_taxonomy_id 
_pdbx_entity_src_syn.details 
1 1 sample ? ? ? ? ? 
;CDPI3 COVALENTLY LINKED TO 5' END OF DNA STRAND A WITH A HEXAMETHYLENE LINKER
;
2 1 sample ? ? ? ? ? 
;CDPI3 COVALENTLY LINKED TO 5' END OF DNA STRAND A WITH A HEXAMETHYLENE LINKER
;
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?     'C10 H14 N5 O6 P'   331.222  
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ?     'C9 H14 N3 O7 P'    307.197  
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?     'C10 H14 N5 O7 P'   347.221  
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ?     'C10 H15 N2 O8 P'   322.208  
THX 'DNA linking' . 
;PHOSPHONIC ACID 6-({6-[6-(6-CARBAMOYL-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDOCENE-2-CA RBONYL]-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBONL}-AMINO)-HEXYL ESTER 5-(5-METHYL-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-TETRAHYDRO-FURAN-2-YLMETHYL ESTER
;
CDPI3 'C50 H53 N10 O12 P' 1016.989 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  THX 1  1  1  THX THX A . n 
A 1 2  DG  2  2  2  DG  G   A . n 
A 1 3  DA  3  3  3  DA  A   A . n 
A 1 4  DT  4  4  4  DT  T   A . n 
A 1 5  DT  5  5  5  DT  T   A . n 
A 1 6  DA  6  6  6  DA  A   A . n 
A 1 7  DT  7  7  7  DT  T   A . n 
A 1 8  DC  8  8  8  DC  C   A . n 
A 1 9  DT  9  9  9  DT  T   A . n 
A 1 10 DG  10 10 10 DG  G   A . n 
B 2 1  DC  1  11 11 DC  C   B . n 
B 2 2  DA  2  12 12 DA  A   B . n 
B 2 3  DG  3  13 13 DG  G   B . n 
B 2 4  DA  4  14 14 DA  A   B . n 
B 2 5  DT  5  15 15 DT  T   B . n 
B 2 6  DA  6  16 16 DA  A   B . n 
B 2 7  DA  7  17 17 DA  A   B . n 
B 2 8  DT  8  18 18 DT  T   B . n 
B 2 9  DC  9  19 19 DC  C   B . n 
B 2 10 DA  10 20 20 DA  A   B . n 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
X-PLOR 'model building' 3.1 ? 1 
X-PLOR refinement       3.1 ? 2 
X-PLOR phasing          3.1 ? 3 
# 
_cell.entry_id           1AUL 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1AUL 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
_exptl.entry_id          1AUL 
_exptl.method            'SOLUTION NMR' 
_exptl.crystals_number   ? 
# 
_database_PDB_matrix.entry_id          1AUL 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1AUL 
_struct.title                     
'SOLUTION STRUCTURE OF A HIGHLY STABLE DNA DUPLEX CONJUGATED TO A MINOR GROOVE BINDER, NMR, MINIMIZED AVERAGE STRUCTURE' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1AUL 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'DEOXYRIBONUCLEIC ACID, CDPI3, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
# 
loop_
_struct_ref.id 
_struct_ref.entity_id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_db_isoform 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_align_begin 
1 1 PDB 1AUL 1AUL ? ? ? 
2 2 PDB 1AUL 1AUL ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1AUL A 1 ? 10 ? 1AUL 1  ? 10 ? 1  10 
2 2 1AUL B 1 ? 10 ? 1AUL 11 ? 20 ? 11 20 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale one ? A THX 1  "O3'" ? ? ? 1_555 A DG 2 P  ? ? A THX 1  A DG 2  1_555 ? ? ? ? ? ? ?            1.734 ? ? 
hydrog1  hydrog ?   ? A DG  2  N1    ? ? ? 1_555 B DC 9 N3 ? ? A DG  2  B DC 19 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ?     ? ? 
hydrog2  hydrog ?   ? A DA  3  N1    ? ? ? 1_555 B DT 8 N3 ? ? A DA  3  B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?   ? A DA  3  N6    ? ? ? 1_555 B DT 8 O4 ? ? A DA  3  B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?   ? A DT  4  O4    ? ? ? 1_555 B DA 6 N6 ? ? A DT  4  B DA 16 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ?     ? ? 
hydrog5  hydrog ?   ? A DT  4  N3    ? ? ? 1_555 B DA 7 N1 ? ? A DT  4  B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?   ? A DT  4  O4    ? ? ? 1_555 B DA 7 N6 ? ? A DT  4  B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?   ? A DT  5  N3    ? ? ? 1_555 B DA 6 N1 ? ? A DT  5  B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?   ? A DT  5  O4    ? ? ? 1_555 B DA 6 N6 ? ? A DT  5  B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?   ? A DA  6  N1    ? ? ? 1_555 B DT 5 N3 ? ? A DA  6  B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?   ? A DA  6  N6    ? ? ? 1_555 B DT 5 O4 ? ? A DA  6  B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?   ? A DT  7  N3    ? ? ? 1_555 B DA 4 N1 ? ? A DT  7  B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?   ? A DT  7  O4    ? ? ? 1_555 B DA 4 N6 ? ? A DT  7  B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?   ? A DC  8  N3    ? ? ? 1_555 B DG 3 N1 ? ? A DC  8  B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?   ? A DC  8  N4    ? ? ? 1_555 B DG 3 O6 ? ? A DC  8  B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?   ? A DC  8  O2    ? ? ? 1_555 B DG 3 N2 ? ? A DC  8  B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?   ? A DT  9  N3    ? ? ? 1_555 B DA 2 N1 ? ? A DT  9  B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?   ? A DT  9  O4    ? ? ? 1_555 B DA 2 N6 ? ? A DT  9  B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?   ? A DG  10 N1    ? ? ? 1_555 B DC 1 N3 ? ? A DG  10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?   ? A DG  10 N2    ? ? ? 1_555 B DC 1 O2 ? ? A DG  10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?   ? A DG  10 O6    ? ? ? 1_555 B DC 1 N4 ? ? A DG  10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
loop_
_pdbx_validate_close_contact.id 
_pdbx_validate_close_contact.PDB_model_num 
_pdbx_validate_close_contact.auth_atom_id_1 
_pdbx_validate_close_contact.auth_asym_id_1 
_pdbx_validate_close_contact.auth_comp_id_1 
_pdbx_validate_close_contact.auth_seq_id_1 
_pdbx_validate_close_contact.PDB_ins_code_1 
_pdbx_validate_close_contact.label_alt_id_1 
_pdbx_validate_close_contact.auth_atom_id_2 
_pdbx_validate_close_contact.auth_asym_id_2 
_pdbx_validate_close_contact.auth_comp_id_2 
_pdbx_validate_close_contact.auth_seq_id_2 
_pdbx_validate_close_contact.PDB_ins_code_2 
_pdbx_validate_close_contact.label_alt_id_2 
_pdbx_validate_close_contact.dist 
1 1 O4 A THX 1 ? ? H61 B DA 20 ? ? 1.39 
2 1 H3 A THX 1 ? ? N1  B DA 20 ? ? 1.57 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 "O3'" A THX 1  ? ? P     A DG 2  ? ? 1.734 1.607 0.127  0.012 Y 
2  1 P     A DG  2  ? ? "O5'" A DG 2  ? ? 1.742 1.593 0.149  0.010 N 
3  1 "O3'" A DG  2  ? ? P     A DA 3  ? ? 1.730 1.607 0.123  0.012 Y 
4  1 P     A DA  3  ? ? "O5'" A DA 3  ? ? 1.726 1.593 0.133  0.010 N 
5  1 N9    A DA  3  ? ? C4    A DA 3  ? ? 1.332 1.374 -0.042 0.006 N 
6  1 "O3'" A DA  3  ? ? P     A DT 4  ? ? 1.731 1.607 0.124  0.012 Y 
7  1 P     A DT  4  ? ? "O5'" A DT 4  ? ? 1.733 1.593 0.140  0.010 N 
8  1 "O3'" A DT  4  ? ? P     A DT 5  ? ? 1.725 1.607 0.118  0.012 Y 
9  1 P     A DT  5  ? ? "O5'" A DT 5  ? ? 1.716 1.593 0.123  0.010 N 
10 1 "O3'" A DT  5  ? ? P     A DA 6  ? ? 1.722 1.607 0.115  0.012 Y 
11 1 P     A DA  6  ? ? "O5'" A DA 6  ? ? 1.727 1.593 0.134  0.010 N 
12 1 "C3'" A DA  6  ? ? "C2'" A DA 6  ? ? 1.652 1.518 0.134  0.012 N 
13 1 "O3'" A DA  6  ? ? P     A DT 7  ? ? 1.729 1.607 0.122  0.012 Y 
14 1 P     A DT  7  ? ? "O5'" A DT 7  ? ? 1.730 1.593 0.137  0.010 N 
15 1 "O3'" A DT  7  ? ? P     A DC 8  ? ? 1.734 1.607 0.127  0.012 Y 
16 1 P     A DC  8  ? ? "O5'" A DC 8  ? ? 1.733 1.593 0.140  0.010 N 
17 1 "O3'" A DC  8  ? ? P     A DT 9  ? ? 1.730 1.607 0.123  0.012 Y 
18 1 P     A DT  9  ? ? "O5'" A DT 9  ? ? 1.726 1.593 0.133  0.010 N 
19 1 "C2'" A DT  9  ? ? "C1'" A DT 9  ? ? 1.589 1.519 0.070  0.010 N 
20 1 "O3'" A DT  9  ? ? P     A DG 10 ? ? 1.732 1.607 0.125  0.012 Y 
21 1 P     A DG  10 ? ? "O5'" A DG 10 ? ? 1.732 1.593 0.139  0.010 N 
22 1 "C2'" B DC  11 ? ? "C1'" B DC 11 ? ? 1.584 1.519 0.065  0.010 N 
23 1 "O3'" B DC  11 ? ? P     B DA 12 ? ? 1.737 1.607 0.130  0.012 Y 
24 1 P     B DA  12 ? ? "O5'" B DA 12 ? ? 1.733 1.593 0.140  0.010 N 
25 1 "O3'" B DA  12 ? ? P     B DG 13 ? ? 1.726 1.607 0.119  0.012 Y 
26 1 P     B DG  13 ? ? "O5'" B DG 13 ? ? 1.727 1.593 0.134  0.010 N 
27 1 "O3'" B DG  13 ? ? P     B DA 14 ? ? 1.728 1.607 0.121  0.012 Y 
28 1 P     B DA  14 ? ? "O5'" B DA 14 ? ? 1.726 1.593 0.133  0.010 N 
29 1 "O3'" B DA  14 ? ? P     B DT 15 ? ? 1.731 1.607 0.124  0.012 Y 
30 1 P     B DT  15 ? ? "O5'" B DT 15 ? ? 1.736 1.593 0.143  0.010 N 
31 1 "O3'" B DT  15 ? ? P     B DA 16 ? ? 1.728 1.607 0.121  0.012 Y 
32 1 P     B DA  16 ? ? "O5'" B DA 16 ? ? 1.730 1.593 0.137  0.010 N 
33 1 "C2'" B DA  16 ? ? "C1'" B DA 16 ? ? 1.581 1.519 0.062  0.010 N 
34 1 "O3'" B DA  16 ? ? P     B DA 17 ? ? 1.723 1.607 0.116  0.012 Y 
35 1 P     B DA  17 ? ? "O5'" B DA 17 ? ? 1.718 1.593 0.125  0.010 N 
36 1 "O3'" B DA  17 ? ? P     B DT 18 ? ? 1.724 1.607 0.117  0.012 Y 
37 1 P     B DT  18 ? ? "O5'" B DT 18 ? ? 1.744 1.593 0.151  0.010 N 
38 1 "O3'" B DT  18 ? ? P     B DC 19 ? ? 1.752 1.607 0.145  0.012 Y 
39 1 P     B DC  19 ? ? "O5'" B DC 19 ? ? 1.738 1.593 0.145  0.010 N 
40 1 "C2'" B DC  19 ? ? "C1'" B DC 19 ? ? 1.601 1.519 0.082  0.010 N 
41 1 "O3'" B DC  19 ? ? P     B DA 20 ? ? 1.736 1.607 0.129  0.012 Y 
42 1 P     B DA  20 ? ? "O5'" B DA 20 ? ? 1.726 1.593 0.133  0.010 N 
43 1 "C3'" B DA  20 ? ? "C2'" B DA 20 ? ? 1.593 1.518 0.075  0.012 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.88 128.60 -3.72 0.60 N 
2 1 C5 B DG 13 ? ? C6 B DG 13 ? ? O6 B DG 13 ? ? 124.88 128.60 -3.72 0.60 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 DC B 19 ? ? 0.072 'SIDE CHAIN' 
2 1 DA B 20 ? ? 0.059 'SIDE CHAIN' 
# 
_pdbx_validate_polymer_linkage.id               1 
_pdbx_validate_polymer_linkage.PDB_model_num    1 
_pdbx_validate_polymer_linkage.auth_atom_id_1   "O3'" 
_pdbx_validate_polymer_linkage.auth_asym_id_1   B 
_pdbx_validate_polymer_linkage.auth_comp_id_1   DT 
_pdbx_validate_polymer_linkage.auth_seq_id_1    18 
_pdbx_validate_polymer_linkage.PDB_ins_code_1   ? 
_pdbx_validate_polymer_linkage.label_alt_id_1   ? 
_pdbx_validate_polymer_linkage.auth_atom_id_2   P 
_pdbx_validate_polymer_linkage.auth_asym_id_2   B 
_pdbx_validate_polymer_linkage.auth_comp_id_2   DC 
_pdbx_validate_polymer_linkage.auth_seq_id_2    19 
_pdbx_validate_polymer_linkage.PDB_ins_code_2   ? 
_pdbx_validate_polymer_linkage.label_alt_id_2   ? 
_pdbx_validate_polymer_linkage.dist             1.75 
# 
_pdbx_nmr_ensemble.entry_id                             1AUL 
_pdbx_nmr_ensemble.conformers_calculated_total_number   6 
_pdbx_nmr_ensemble.conformers_submitted_total_number    1 
_pdbx_nmr_ensemble.conformer_selection_criteria         'LEAST RESTRAINT VIOLATION' 
# 
_pdbx_nmr_exptl_sample_conditions.conditions_id       1 
_pdbx_nmr_exptl_sample_conditions.temperature         293.15 
_pdbx_nmr_exptl_sample_conditions.pressure            ? 
_pdbx_nmr_exptl_sample_conditions.pH                  6.0 
_pdbx_nmr_exptl_sample_conditions.ionic_strength      ? 
_pdbx_nmr_exptl_sample_conditions.pressure_units      . 
_pdbx_nmr_exptl_sample_conditions.temperature_units   K 
# 
loop_
_pdbx_nmr_exptl.experiment_id 
_pdbx_nmr_exptl.conditions_id 
_pdbx_nmr_exptl.type 
_pdbx_nmr_exptl.solution_id 
1 1 NOESY       1 
2 1 DQF-COSY    1 
3 1 HETEROTOCSY 1 
4 1 TOCSY       1 
# 
_pdbx_nmr_refine.entry_id           1AUL 
_pdbx_nmr_refine.method             'RESTRAINED MOLECULAR DYNAMICS/RELAXATION MATRIX REFINEMENT' 
_pdbx_nmr_refine.details            
;CANONICAL B-TYPE STRUCTURE USED IN RESTRAINED MOLECULAR DYNAMICS CALCULATIONS GENERATING SIX STRUCTURES FROM DIFFERENT RANDOM NUMBER SEEDS. THE SIX STRUCTURES WERE SUBJECTED TO RELAXATION MATRIX REFINEMENT TO GENERATE THE SIX FINAL STRUCTURES. THESE SIX STRUCTURES WERE AVERAGED AND MINIMIZED TO GIVE THE FINAL STRUCTURE PRESENTED HERE.
;
_pdbx_nmr_refine.software_ordinal   1 
# 
loop_
_pdbx_nmr_software.classification 
_pdbx_nmr_software.name 
_pdbx_nmr_software.version 
_pdbx_nmr_software.authors 
_pdbx_nmr_software.ordinal 
refinement           X-PLOR ?   BRUNGER 1 
'structure solution' X-PLOR 3.1 ?       2 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O N N 1   
DA  P      P N N 2   
DA  OP1    O N N 3   
DA  OP2    O N N 4   
DA  "O5'"  O N N 5   
DA  "C5'"  C N N 6   
DA  "C4'"  C N R 7   
DA  "O4'"  O N N 8   
DA  "C3'"  C N S 9   
DA  "O3'"  O N N 10  
DA  "C2'"  C N N 11  
DA  "C1'"  C N R 12  
DA  N9     N Y N 13  
DA  C8     C Y N 14  
DA  N7     N Y N 15  
DA  C5     C Y N 16  
DA  C6     C Y N 17  
DA  N6     N N N 18  
DA  N1     N Y N 19  
DA  C2     C Y N 20  
DA  N3     N Y N 21  
DA  C4     C Y N 22  
DA  HOP3   H N N 23  
DA  HOP2   H N N 24  
DA  "H5'"  H N N 25  
DA  "H5''" H N N 26  
DA  "H4'"  H N N 27  
DA  "H3'"  H N N 28  
DA  "HO3'" H N N 29  
DA  "H2'"  H N N 30  
DA  "H2''" H N N 31  
DA  "H1'"  H N N 32  
DA  H8     H N N 33  
DA  H61    H N N 34  
DA  H62    H N N 35  
DA  H2     H N N 36  
DC  OP3    O N N 37  
DC  P      P N N 38  
DC  OP1    O N N 39  
DC  OP2    O N N 40  
DC  "O5'"  O N N 41  
DC  "C5'"  C N N 42  
DC  "C4'"  C N R 43  
DC  "O4'"  O N N 44  
DC  "C3'"  C N S 45  
DC  "O3'"  O N N 46  
DC  "C2'"  C N N 47  
DC  "C1'"  C N R 48  
DC  N1     N N N 49  
DC  C2     C N N 50  
DC  O2     O N N 51  
DC  N3     N N N 52  
DC  C4     C N N 53  
DC  N4     N N N 54  
DC  C5     C N N 55  
DC  C6     C N N 56  
DC  HOP3   H N N 57  
DC  HOP2   H N N 58  
DC  "H5'"  H N N 59  
DC  "H5''" H N N 60  
DC  "H4'"  H N N 61  
DC  "H3'"  H N N 62  
DC  "HO3'" H N N 63  
DC  "H2'"  H N N 64  
DC  "H2''" H N N 65  
DC  "H1'"  H N N 66  
DC  H41    H N N 67  
DC  H42    H N N 68  
DC  H5     H N N 69  
DC  H6     H N N 70  
DG  OP3    O N N 71  
DG  P      P N N 72  
DG  OP1    O N N 73  
DG  OP2    O N N 74  
DG  "O5'"  O N N 75  
DG  "C5'"  C N N 76  
DG  "C4'"  C N R 77  
DG  "O4'"  O N N 78  
DG  "C3'"  C N S 79  
DG  "O3'"  O N N 80  
DG  "C2'"  C N N 81  
DG  "C1'"  C N R 82  
DG  N9     N Y N 83  
DG  C8     C Y N 84  
DG  N7     N Y N 85  
DG  C5     C Y N 86  
DG  C6     C N N 87  
DG  O6     O N N 88  
DG  N1     N N N 89  
DG  C2     C N N 90  
DG  N2     N N N 91  
DG  N3     N N N 92  
DG  C4     C Y N 93  
DG  HOP3   H N N 94  
DG  HOP2   H N N 95  
DG  "H5'"  H N N 96  
DG  "H5''" H N N 97  
DG  "H4'"  H N N 98  
DG  "H3'"  H N N 99  
DG  "HO3'" H N N 100 
DG  "H2'"  H N N 101 
DG  "H2''" H N N 102 
DG  "H1'"  H N N 103 
DG  H8     H N N 104 
DG  H1     H N N 105 
DG  H21    H N N 106 
DG  H22    H N N 107 
DT  OP3    O N N 108 
DT  P      P N N 109 
DT  OP1    O N N 110 
DT  OP2    O N N 111 
DT  "O5'"  O N N 112 
DT  "C5'"  C N N 113 
DT  "C4'"  C N R 114 
DT  "O4'"  O N N 115 
DT  "C3'"  C N S 116 
DT  "O3'"  O N N 117 
DT  "C2'"  C N N 118 
DT  "C1'"  C N R 119 
DT  N1     N N N 120 
DT  C2     C N N 121 
DT  O2     O N N 122 
DT  N3     N N N 123 
DT  C4     C N N 124 
DT  O4     O N N 125 
DT  C5     C N N 126 
DT  C7     C N N 127 
DT  C6     C N N 128 
DT  HOP3   H N N 129 
DT  HOP2   H N N 130 
DT  "H5'"  H N N 131 
DT  "H5''" H N N 132 
DT  "H4'"  H N N 133 
DT  "H3'"  H N N 134 
DT  "HO3'" H N N 135 
DT  "H2'"  H N N 136 
DT  "H2''" H N N 137 
DT  "H1'"  H N N 138 
DT  H3     H N N 139 
DT  H71    H N N 140 
DT  H72    H N N 141 
DT  H73    H N N 142 
DT  H6     H N N 143 
THX "C1'"  C N R 144 
THX C10    C N N 145 
THX C11    C N N 146 
THX C12    C N N 147 
THX C13    C N N 148 
THX C14    C Y N 149 
THX C15    C Y N 150 
THX C16    C Y N 151 
THX C17    C Y N 152 
THX C18    C Y N 153 
THX C19    C Y N 154 
THX C2     C N N 155 
THX "C2'"  C N N 156 
THX C20    C Y N 157 
THX C21    C Y N 158 
THX C22    C N N 159 
THX C23    C N N 160 
THX C24    C N N 161 
THX C25    C Y N 162 
THX C26    C Y N 163 
THX C27    C Y N 164 
THX C28    C Y N 165 
THX C29    C Y N 166 
THX "C3'"  C N S 167 
THX C30    C Y N 168 
THX C31    C Y N 169 
THX C32    C Y N 170 
THX C33    C N N 171 
THX C34    C N N 172 
THX C35    C N N 173 
THX C36    C Y N 174 
THX C37    C Y N 175 
THX C38    C Y N 176 
THX C39    C Y N 177 
THX C4     C N N 178 
THX "C4'"  C N R 179 
THX C40    C Y N 180 
THX C41    C Y N 181 
THX C42    C Y N 182 
THX C43    C Y N 183 
THX C44    C N N 184 
THX C45    C N N 185 
THX C46    C N N 186 
THX C5     C N N 187 
THX "C5'"  C N N 188 
THX C5M    C N N 189 
THX C6     C N N 190 
THX C7     C N N 191 
THX C8     C N N 192 
THX C9     C N N 193 
THX N1     N N N 194 
THX N10    N N N 195 
THX N15    N N N 196 
THX N3     N N N 197 
THX N4     N N N 198 
THX N5     N Y N 199 
THX N6     N N N 200 
THX N7     N Y N 201 
THX N8     N N N 202 
THX N9     N Y N 203 
THX O1P    O N N 204 
THX O2     O N N 205 
THX O2P    O N N 206 
THX "O3'"  O N N 207 
THX O3P    O N N 208 
THX O4     O N N 209 
THX "O4'"  O N N 210 
THX "O5'"  O N N 211 
THX O6     O N N 212 
THX O7     O N N 213 
THX O8     O N N 214 
THX O9     O N N 215 
THX P      P N S 216 
THX "H1'"  H N N 217 
THX H101   H N N 218 
THX H102   H N N 219 
THX H111   H N N 220 
THX H112   H N N 221 
THX H121   H N N 222 
THX H122   H N N 223 
THX H15    H N N 224 
THX H18    H N N 225 
THX H19    H N N 226 
THX "H2'1" H N N 227 
THX "H2'2" H N N 228 
THX H221   H N N 229 
THX H222   H N N 230 
THX H231   H N N 231 
THX H232   H N N 232 
THX H26    H N N 233 
THX H29    H N N 234 
THX "H3'"  H N N 235 
THX H30    H N N 236 
THX H331   H N N 237 
THX H332   H N N 238 
THX H341   H N N 239 
THX H342   H N N 240 
THX H37    H N N 241 
THX "H4'"  H N N 242 
THX H40    H N N 243 
THX H41    H N N 244 
THX H441   H N N 245 
THX H442   H N N 246 
THX H451   H N N 247 
THX H452   H N N 248 
THX "H5'1" H N N 249 
THX "H5'2" H N N 250 
THX H5M1   H N N 251 
THX H5M2   H N N 252 
THX H5M3   H N N 253 
THX H6     H N N 254 
THX H71    H N N 255 
THX H72    H N N 256 
THX H81    H N N 257 
THX H82    H N N 258 
THX H91    H N N 259 
THX H92    H N N 260 
THX H151   H N N 261 
THX H152   H N N 262 
THX H3     H N N 263 
THX HN4    H N N 264 
THX HN5    H N N 265 
THX HN7    H N N 266 
THX HN9    H N N 267 
THX HOP2   H N N 268 
THX "HO'3" H N N 269 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
THX "C1'" "C2'"  sing N N 150 
THX "C1'" N1     sing N N 151 
THX "C1'" "O4'"  sing N N 152 
THX "C1'" "H1'"  sing N N 153 
THX C10   C11    sing N N 154 
THX C10   C9     sing N N 155 
THX C10   H101   sing N N 156 
THX C10   H102   sing N N 157 
THX C11   C12    sing N N 158 
THX C11   H111   sing N N 159 
THX C11   H112   sing N N 160 
THX C12   N4     sing N N 161 
THX C12   H121   sing N N 162 
THX C12   H122   sing N N 163 
THX C13   C14    sing N N 164 
THX C13   N4     sing N N 165 
THX C13   O6     doub N N 166 
THX C14   C15    doub Y N 167 
THX C14   N5     sing Y N 168 
THX C15   C16    sing Y N 169 
THX C15   H15    sing N N 170 
THX C16   C17    sing Y N 171 
THX C16   C21    doub Y N 172 
THX C17   C18    doub Y N 173 
THX C17   N5     sing Y N 174 
THX C18   C19    sing Y N 175 
THX C18   H18    sing N N 176 
THX C19   C20    doub Y N 177 
THX C19   H19    sing N N 178 
THX C2    N1     sing N N 179 
THX C2    N3     sing N N 180 
THX C2    O2     doub N N 181 
THX "C2'" "C3'"  sing N N 182 
THX "C2'" "H2'1" sing N N 183 
THX "C2'" "H2'2" sing N N 184 
THX C20   C21    sing Y N 185 
THX C20   N6     sing N N 186 
THX C21   C22    sing N N 187 
THX C22   C23    sing N N 188 
THX C22   H221   sing N N 189 
THX C22   H222   sing N N 190 
THX C23   N6     sing N N 191 
THX C23   H231   sing N N 192 
THX C23   H232   sing N N 193 
THX C24   C25    sing N N 194 
THX C24   N6     sing N N 195 
THX C24   O7     doub N N 196 
THX C25   C26    doub Y N 197 
THX C25   N7     sing Y N 198 
THX C26   C27    sing Y N 199 
THX C26   H26    sing N N 200 
THX C27   C28    sing Y N 201 
THX C27   C32    doub Y N 202 
THX C28   C29    doub Y N 203 
THX C28   N7     sing Y N 204 
THX C29   C30    sing Y N 205 
THX C29   H29    sing N N 206 
THX "C3'" "C4'"  sing N N 207 
THX "C3'" "O3'"  sing N N 208 
THX "C3'" "H3'"  sing N N 209 
THX C30   C31    doub Y N 210 
THX C30   H30    sing N N 211 
THX C31   C32    sing Y N 212 
THX C31   N8     sing N N 213 
THX C32   C33    sing N N 214 
THX C33   C34    sing N N 215 
THX C33   H331   sing N N 216 
THX C33   H332   sing N N 217 
THX C34   N8     sing N N 218 
THX C34   H341   sing N N 219 
THX C34   H342   sing N N 220 
THX C35   C36    sing N N 221 
THX C35   N8     sing N N 222 
THX C35   O8     doub N N 223 
THX C36   C37    doub Y N 224 
THX C36   N9     sing Y N 225 
THX C37   C38    sing Y N 226 
THX C37   H37    sing N N 227 
THX C38   C39    sing Y N 228 
THX C38   C43    doub Y N 229 
THX C39   C40    doub Y N 230 
THX C39   N9     sing Y N 231 
THX C4    C5     sing N N 232 
THX C4    N3     sing N N 233 
THX C4    O4     doub N N 234 
THX "C4'" "C5'"  sing N N 235 
THX "C4'" "O4'"  sing N N 236 
THX "C4'" "H4'"  sing N N 237 
THX C40   C41    sing Y N 238 
THX C40   H40    sing N N 239 
THX C41   C42    doub Y N 240 
THX C41   H41    sing N N 241 
THX C42   C43    sing Y N 242 
THX C42   N10    sing N N 243 
THX C43   C44    sing N N 244 
THX C44   C45    sing N N 245 
THX C44   H441   sing N N 246 
THX C44   H442   sing N N 247 
THX C45   N10    sing N N 248 
THX C45   H451   sing N N 249 
THX C45   H452   sing N N 250 
THX C46   N10    sing N N 251 
THX C46   N15    sing N N 252 
THX C46   O9     doub N N 253 
THX C5    C5M    sing N N 254 
THX C5    C6     doub N N 255 
THX "C5'" "O5'"  sing N N 256 
THX "C5'" "H5'1" sing N N 257 
THX "C5'" "H5'2" sing N N 258 
THX C5M   H5M1   sing N N 259 
THX C5M   H5M2   sing N N 260 
THX C5M   H5M3   sing N N 261 
THX C6    N1     sing N N 262 
THX C6    H6     sing N N 263 
THX C7    C8     sing N N 264 
THX C7    O3P    sing N N 265 
THX C7    H71    sing N N 266 
THX C7    H72    sing N N 267 
THX C8    C9     sing N N 268 
THX C8    H81    sing N N 269 
THX C8    H82    sing N N 270 
THX C9    H91    sing N N 271 
THX C9    H92    sing N N 272 
THX N15   H151   sing N N 273 
THX N15   H152   sing N N 274 
THX N3    H3     sing N N 275 
THX N4    HN4    sing N N 276 
THX N5    HN5    sing N N 277 
THX N7    HN7    sing N N 278 
THX N9    HN9    sing N N 279 
THX O1P   P      doub N N 280 
THX O2P   P      sing N N 281 
THX O2P   HOP2   sing N N 282 
THX "O3'" "HO'3" sing N N 283 
THX O3P   P      sing N N 284 
THX "O5'" P      sing N N 285 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1AUL 'double helix'        
1AUL 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DG 2  1_555 B DC 9 1_555 0.840  0.149  0.941  0.709   7.219   26.294 1 A_DG2:DC19_B  A 2  ? B 19 ? ?  1 
1 A DA 3  1_555 B DT 8 1_555 -1.088 -0.539 0.744  3.244   -20.653 14.693 2 A_DA3:DT18_B  A 3  ? B 18 ? 20 1 
1 A DT 4  1_555 B DA 7 1_555 0.144  -0.460 1.258  -24.666 -11.516 14.899 3 A_DT4:DA17_B  A 4  ? B 17 ? 20 1 
1 A DT 5  1_555 B DA 6 1_555 -0.283 -0.212 0.534  -9.415  -1.416  4.457  4 A_DT5:DA16_B  A 5  ? B 16 ? 20 1 
1 A DA 6  1_555 B DT 5 1_555 0.467  -0.077 -0.465 -1.083  -6.569  -6.322 5 A_DA6:DT15_B  A 6  ? B 15 ? 20 1 
1 A DT 7  1_555 B DA 4 1_555 -0.175 -0.122 -0.590 16.877  -14.113 1.194  6 A_DT7:DA14_B  A 7  ? B 14 ? 20 1 
1 A DC 8  1_555 B DG 3 1_555 0.684  -0.242 -0.424 7.590   -8.338  3.882  7 A_DC8:DG13_B  A 8  ? B 13 ? 19 1 
1 A DT 9  1_555 B DA 2 1_555 0.400  -0.259 0.176  9.588   -7.991  -5.710 8 A_DT9:DA12_B  A 9  ? B 12 ? 20 1 
1 A DG 10 1_555 B DC 1 1_555 -0.616 -0.342 0.206  6.923   1.045   -3.536 9 A_DG10:DC11_B A 10 ? B 11 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DG 2 1_555 B DC 9 1_555 A DA 3  1_555 B DT 8 1_555 0.023  -0.895 3.171 9.932   7.125  26.185 -3.287 2.032  2.674 14.748 
-20.557 28.852 1 AA_DG2DA3:DT18DC19_BB  A 2 ? B 19 ? A 3  ? B 18 ? 
1 A DA 3 1_555 B DT 8 1_555 A DT 4  1_555 B DA 7 1_555 0.458  -0.197 4.347 -0.655  9.642  41.736 -1.545 -0.715 4.196 13.320 0.905 
42.791 2 AA_DA3DT4:DA17DT18_BB  A 3 ? B 18 ? A 4  ? B 17 ? 
1 A DT 4 1_555 B DA 7 1_555 A DT 5  1_555 B DA 6 1_555 -0.064 -0.560 3.031 3.245   3.791  29.174 -1.830 0.755  2.913 7.458  -6.383 
29.589 3 AA_DT4DT5:DA16DA17_BB  A 4 ? B 17 ? A 5  ? B 16 ? 
1 A DT 5 1_555 B DA 6 1_555 A DA 6  1_555 B DT 5 1_555 -0.531 -1.104 2.762 10.725  6.010  33.881 -2.467 2.074  2.273 9.916  
-17.696 35.981 4 AA_DT5DA6:DT15DA16_BB  A 5 ? B 16 ? A 6  ? B 15 ? 
1 A DA 6 1_555 B DT 5 1_555 A DT 7  1_555 B DA 4 1_555 0.506  -0.384 2.782 -0.186  6.151  34.183 -1.435 -0.871 2.672 10.360 0.313 
34.716 5 AA_DA6DT7:DA14DT15_BB  A 6 ? B 15 ? A 7  ? B 14 ? 
1 A DT 7 1_555 B DA 4 1_555 A DC 8  1_555 B DG 3 1_555 -0.478 -0.453 3.388 0.019   11.535 37.015 -2.124 0.723  3.115 17.651 -0.029 
38.710 6 AA_DT7DC8:DG13DA14_BB  A 7 ? B 14 ? A 8  ? B 13 ? 
1 A DC 8 1_555 B DG 3 1_555 A DT 9  1_555 B DA 2 1_555 -0.102 -0.869 3.505 -4.169  -5.778 36.846 -0.524 -0.439 3.586 -9.038 6.521 
37.505 7 AA_DC8DT9:DA12DG13_BB  A 8 ? B 13 ? A 9  ? B 12 ? 
1 A DT 9 1_555 B DA 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.705 -1.955 2.927 -10.600 2.490  28.346 -4.194 -0.595 2.824 4.864  20.704 
30.325 8 AA_DT9DG10:DC11DA12_BB A 9 ? B 12 ? A 10 ? B 11 ? 
# 
_pdbx_nmr_spectrometer.spectrometer_id   1 
_pdbx_nmr_spectrometer.model             UNITYPLUS 
_pdbx_nmr_spectrometer.manufacturer      Varian 
_pdbx_nmr_spectrometer.field_strength    600 
# 
_atom_sites.entry_id                    1AUL 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_