HEADER HYDROLASE 04-APR-96 1AVP TITLE STRUCTURE OF HUMAN ADENOVIRUS 2 PROTEINASE WITH ITS 11 AMINO ACID TITLE 2 COFACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOVIRAL PROTEINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MAIN; COMPND 5 SYNONYM: AVP; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PVIC PEPTIDE COFACTOR DISULFIDE BONDS TO CYS104 OF COMPND 8 AVP; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ADENOVIRAL PROTEINASE; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: PEPT; COMPND 13 SYNONYM: PVIC; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: PVIC PEPTIDE IS CHEMICALLY SYNTHESIZED PVIC PEPTIDE COMPND 16 COFACTOR DISULFIDE BONDS TO CYS104 OF AVP SOURCE MOL_ID: 1; SOURCE 2 FRAGMENT: MAIN; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 2; SOURCE 4 ORGANISM_TAXID: 10515; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 13; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS C; SOURCE 14 ORGANISM_COMMON: MASTADENOVIRUS; SOURCE 15 ORGANISM_TAXID: 10515 KEYWDS THIOL HYDROLASE, VIRAL PROTEINASE, PEPTIDE COFACTOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DING,W.J.MCGRATH,R.M.SWEET,W.F.MANGEL REVDAT 6 20-NOV-24 1AVP 1 REMARK REVDAT 5 18-APR-18 1AVP 1 REMARK REVDAT 4 25-MAY-16 1AVP 1 SOURCE VERSN REVDAT 3 24-FEB-09 1AVP 1 VERSN REVDAT 2 28-FEB-06 1AVP 1 EXPDTA REVDAT 1 19-NOV-97 1AVP 0 JRNL AUTH J.DING,W.J.MCGRATH,R.M.SWEET,W.F.MANGEL JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN ADENOVIRUS PROTEINASE WITH JRNL TITL 2 ITS 11 AMINO ACID COFACTOR. JRNL REF EMBO J. V. 15 1778 1996 JRNL REFN ISSN 0261-4189 JRNL PMID 8617222 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.J.MCGRATH,A.P.ABOLA,D.L.TOLEDO,M.T.BROWN,W.F.MANGEL REMARK 1 TITL CHARACTERIZATION OF THE HUMAN ADENOVIRUS PROTEINASE ACTIVITY REMARK 1 TITL 2 IN DISRUPTED VIRUS PARTICLES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH W.F.MANGEL,D.L.TOLEDO,M.T.BROWN,J.H.MARTIN,W.J.MCGRATH REMARK 1 TITL CHARACTERIZATION OF THREE COMPONENTS OF HUMAN ADENOVIRUS REMARK 1 TITL 2 ACTIVITY IN VITRO REMARK 1 REF J.BIOL.CHEM. V. 271 536 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH W.F.MANGEL,W.J.MCGRATH,D.L.TOLEDO,C.W.ANDERSON REMARK 1 TITL VIRAL DNA AND A VIRAL PEPTIDE CAN ACT AS COFACTORS OF REMARK 1 TITL 2 ADENOVIRUS VIRION PROTEINASE ACTIVITY REMARK 1 REF NATURE V. 361 274 1993 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 11559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1086 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 420 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 39 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.053 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1715 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.10 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.169 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO,TOPH19.PEP REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-95 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.15 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : ENRAF-NONIUS FAST REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11559 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS SOFTWARE USED : NULL REMARK 200 STARTING MODEL FOR MOLECULAR REPLACEMENT: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.33333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.66667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H PHE A 32 HG SER A 95 0.89 REMARK 500 HD21 ASN A 135 H1 HOH A 528 0.92 REMARK 500 HD22 ASN A 44 H ALA A 46 1.05 REMARK 500 HH TYR A 175 HG1 THR A 196 1.07 REMARK 500 CB CYS A 199 H2 HOH A 527 1.16 REMARK 500 CB CYS A 199 O HOH A 527 1.21 REMARK 500 HD21 ASN A 44 H VAL A 53 1.22 REMARK 500 HD1 HIS A 131 HG1 THR A 146 1.23 REMARK 500 HG SER A 76 H ARG A 79 1.25 REMARK 500 HD1 HIS A 143 H1 HOH A 546 1.29 REMARK 500 HH22 ARG B 211 H1 HOH B 533 1.32 REMARK 500 CA CYS A 199 H1 HOH A 527 1.37 REMARK 500 CB CYS A 199 H1 HOH A 527 1.43 REMARK 500 O GLN A 112 H1 HOH A 504 1.57 REMARK 500 CA CYS A 199 O HOH A 527 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 505 O HOH A 506 3564 0.08 REMARK 500 O HOH A 531 O HOH A 532 3564 0.10 REMARK 500 O HOH A 518 O HOH A 519 4564 0.14 REMARK 500 O HOH A 536 O HOH A 537 2664 0.19 REMARK 500 O HOH A 516 O HOH A 517 1554 0.20 REMARK 500 O HOH A 523 O HOH A 524 3564 0.24 REMARK 500 O HOH A 500 O HOH A 501 3564 0.25 REMARK 500 O HOH A 529 O HOH A 530 3564 0.26 REMARK 500 H1 HOH A 500 H2 HOH A 501 3564 0.34 REMARK 500 H2 HOH A 518 H1 HOH A 519 4564 0.44 REMARK 500 O HOH A 514 O HOH A 515 3564 0.52 REMARK 500 H1 HOH A 536 H2 HOH A 537 2664 0.59 REMARK 500 H2 HOH A 500 H1 HOH A 501 3564 0.72 REMARK 500 O HOH A 529 H2 HOH A 530 3564 0.73 REMARK 500 H1 HOH A 500 O HOH A 501 3564 0.75 REMARK 500 O HOH A 536 H2 HOH A 537 2664 0.77 REMARK 500 O HOH A 516 H2 HOH A 517 1554 0.77 REMARK 500 H1 HOH A 529 O HOH A 530 3564 0.78 REMARK 500 H2 HOH A 516 O HOH A 517 1554 0.79 REMARK 500 H2 HOH A 518 O HOH A 519 4564 0.83 REMARK 500 O HOH A 500 H1 HOH A 501 3564 0.84 REMARK 500 H2 HOH A 529 H1 HOH A 530 3564 0.84 REMARK 500 H2 HOH A 531 O HOH A 532 3564 0.89 REMARK 500 O HOH A 518 H2 HOH A 519 4564 0.90 REMARK 500 O HOH A 531 H1 HOH A 532 3564 0.90 REMARK 500 H2 HOH A 536 H1 HOH A 537 2664 0.92 REMARK 500 O HOH A 514 H1 HOH A 515 3564 0.93 REMARK 500 O HOH A 529 H1 HOH A 530 3564 0.97 REMARK 500 O HOH A 505 H2 HOH A 506 3564 0.97 REMARK 500 H1 HOH A 529 H1 HOH A 530 3564 0.97 REMARK 500 H2 HOH A 536 O HOH A 537 2664 0.97 REMARK 500 H2 HOH A 505 H1 HOH A 506 3564 0.98 REMARK 500 O HOH A 536 H1 HOH A 537 2664 0.98 REMARK 500 H2 HOH A 505 O HOH A 506 3564 0.98 REMARK 500 O HOH A 505 H1 HOH A 506 3564 1.00 REMARK 500 H1 HOH A 516 H2 HOH A 517 1554 1.00 REMARK 500 H1 HOH A 505 O HOH A 506 3564 1.02 REMARK 500 H1 HOH A 531 O HOH A 532 3564 1.02 REMARK 500 H1 HOH A 518 O HOH A 519 4564 1.02 REMARK 500 H2 HOH A 529 H2 HOH A 530 3564 1.05 REMARK 500 O HOH A 531 H2 HOH A 532 3564 1.05 REMARK 500 O HOH A 523 H2 HOH A 524 3564 1.06 REMARK 500 H1 HOH A 523 O HOH A 524 3564 1.06 REMARK 500 H2 HOH A 500 O HOH A 501 3564 1.06 REMARK 500 O HOH A 516 H1 HOH A 517 1554 1.08 REMARK 500 O HOH A 518 H1 HOH A 519 4564 1.09 REMARK 500 H2 HOH A 531 H2 HOH A 532 3564 1.10 REMARK 500 H1 HOH A 516 O HOH A 517 1554 1.11 REMARK 500 H2 HOH A 514 O HOH A 515 3564 1.11 REMARK 500 H1 HOH A 536 O HOH A 537 2664 1.13 REMARK 500 REMARK 500 THIS ENTRY HAS 61 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 89 O - C - N ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 95.17 63.23 REMARK 500 GLN A 6 26.63 -72.85 REMARK 500 GLU A 7 42.48 -108.79 REMARK 500 SER A 34 75.87 -160.29 REMARK 500 GLN A 162 -45.37 178.99 REMARK 500 HIS A 188 10.31 -146.13 REMARK 500 SER A 197 156.73 -48.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 SHEET REMARK 700 SHEET_ID: (), DETERMINATION METHOD: PROCHECK. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 1AVP A 1 204 UNP P03252 ADEN_ADE02 1 204 DBREF 1AVP B 205 215 UNP P03274 PIV6_ADE02 240 250 SEQRES 1 A 204 MET GLY SER SER GLU GLN GLU LEU LYS ALA ILE VAL LYS SEQRES 2 A 204 ASP LEU GLY CYS GLY PRO TYR PHE LEU GLY THR TYR ASP SEQRES 3 A 204 LYS ARG PHE PRO GLY PHE VAL SER PRO HIS LYS LEU ALA SEQRES 4 A 204 CYS ALA ILE VAL ASN THR ALA GLY ARG GLU THR GLY GLY SEQRES 5 A 204 VAL HIS TRP MET ALA PHE ALA TRP ASN PRO ARG SER LYS SEQRES 6 A 204 THR CYS TYR LEU PHE GLU PRO PHE GLY PHE SER ASP GLN SEQRES 7 A 204 ARG LEU LYS GLN VAL TYR GLN PHE GLU TYR GLU SER LEU SEQRES 8 A 204 LEU ARG ARG SER ALA ILE ALA SER SER PRO ASP ARG CYS SEQRES 9 A 204 ILE THR LEU GLU LYS SER THR GLN SER VAL GLN GLY PRO SEQRES 10 A 204 ASN SER ALA ALA CYS GLY LEU PHE CYS CYS MET PHE LEU SEQRES 11 A 204 HIS ALA PHE ALA ASN TRP PRO GLN THR PRO MET ASP HIS SEQRES 12 A 204 ASN PRO THR MET ASN LEU ILE THR GLY VAL PRO ASN SER SEQRES 13 A 204 MET LEU ASN SER PRO GLN VAL GLN PRO THR LEU ARG ARG SEQRES 14 A 204 ASN GLN GLU GLN LEU TYR SER PHE LEU GLU ARG HIS SER SEQRES 15 A 204 PRO TYR PHE ARG SER HIS SER ALA GLN ILE ARG SER ALA SEQRES 16 A 204 THR SER PHE CYS HIS LEU LYS ASN MET SEQRES 1 B 11 GLY VAL GLN SER LEU LYS ARG ARG ARG CYS PHE FORMUL 3 HOH *45(H2 O) HELIX 1 1 LEU A 8 ASP A 14 1 7 HELIX 2 2 GLY A 18 TYR A 20 5 3 HELIX 3 3 ASP A 77 TYR A 84 1 8 HELIX 4 4 GLU A 89 SER A 99 1 11 HELIX 5 5 CYS A 122 ASN A 135 1 14 HELIX 6 6 MET A 147 LEU A 149 5 3 HELIX 7 7 ASN A 155 MET A 157 5 3 HELIX 8 8 GLN A 164 HIS A 181 1 18 HELIX 9 9 PRO A 183 ALA A 195 1 13 SHEET 1 A 5 ALA A 39 ASN A 44 0 SHEET 2 A 5 TRP A 55 ASN A 61 -1 N TRP A 60 O ALA A 39 SHEET 3 A 5 THR A 66 PHE A 70 -1 N PHE A 70 O ALA A 57 SHEET 4 A 5 CYS A 104 SER A 110 1 N THR A 106 O CYS A 67 SHEET 5 A 5 SER B 208 CYS B 214 -1 N ARG B 213 O ILE A 105 SSBOND 1 CYS A 104 CYS B 214 1555 1555 2.04 SITE 1 ACT 3 HIS A 54 CYS A 122 GLU A 71 CRYST1 114.300 114.300 50.000 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008749 0.005051 0.000000 0.00000 SCALE2 0.000000 0.010102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020000 0.00000