data_1AVZ # _entry.id 1AVZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AVZ pdb_00001avz 10.2210/pdb1avz/pdb WWPDB D_1000171324 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-03-25 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-04-04 5 'Structure model' 1 4 2018-04-11 6 'Structure model' 1 5 2023-08-02 7 'Structure model' 1 6 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' Other 5 5 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Refinement description' 8 7 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 4 'Structure model' pdbx_database_status 3 5 'Structure model' diffrn_source 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_initial_refinement_model 6 7 'Structure model' chem_comp_atom 7 7 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.type' 2 4 'Structure model' '_pdbx_database_status.process_site' 3 5 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AVZ _pdbx_database_status.recvd_initial_deposition_date 1997-09-23 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Arold, S.' 1 'Franken, P.' 2 'Dumas, C.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling. ; Structure 5 1361 1372 1997 STRUE6 UK 0969-2126 2005 ? 9351809 '10.1016/S0969-2126(97)00286-4' 1 'Crystal Structure of the Conserved Core of HIV-1 Nef Complexed with a Src Family SH3 Domain' 'Cell(Cambridge,Mass.)' 85 931 ? 1996 CELLB5 US 0092-8674 0998 ? ? ? 2 ;The Solution Structure of HIV-1 Nef Reveals an Unexpected Fold and Permits Delineation of the Binding Surface for the SH3 Domain of HCK Tyrosine Protein Kinase ; Nat.Struct.Biol. 3 340 ? 1996 NSBIEW US 1072-8368 2024 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Arold, S.' 1 ? primary 'Franken, P.' 2 ? primary 'Strub, M.P.' 3 ? primary 'Hoh, F.' 4 ? primary 'Benichou, S.' 5 ? primary 'Benarous, R.' 6 ? primary 'Dumas, C.' 7 ? 1 'Lee, C.H.' 8 ? 1 'Saksela, K.' 9 ? 1 'Mirza, U.A.' 10 ? 1 'Chait, B.T.' 11 ? 1 'Kuriyan, J.' 12 ? 2 'Grzesiek, S.' 13 ? 2 'Bax, A.' 14 ? 2 'Clore, G.M.' 15 ? 2 'Gronenborn, A.M.' 16 ? 2 'Hu, J.S.' 17 ? 2 'Kaufman, J.' 18 ? 2 'Palmer, I.' 19 ? 2 'Stahl, S.J.' 20 ? 2 'Wingfield, P.T.' 21 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NEGATIVE FACTOR' 17568.723 2 ? 'N-TERMINAL RESIDUES GS (PART OF A THROMBIN CLEAVAGE SITE)' 'CONSERVED CORE DOMAIN' ? 2 polymer man 'FYN TYROSINE KINASE' 6524.066 1 2.7.1.112 ? 'SRC-HOMOLOGY 3 DOMAIN' ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'NEF, F-PROTEIN' 2 'SH3 DOMAIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRY PLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC ; ;GSLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRY PLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC ; A,B ? 2 'polypeptide(L)' no no TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LEU n 1 4 GLU n 1 5 ALA n 1 6 GLN n 1 7 GLU n 1 8 GLU n 1 9 GLU n 1 10 GLU n 1 11 VAL n 1 12 GLY n 1 13 PHE n 1 14 PRO n 1 15 VAL n 1 16 THR n 1 17 PRO n 1 18 GLN n 1 19 VAL n 1 20 PRO n 1 21 LEU n 1 22 ARG n 1 23 PRO n 1 24 MET n 1 25 THR n 1 26 TYR n 1 27 LYS n 1 28 ALA n 1 29 ALA n 1 30 VAL n 1 31 ASP n 1 32 LEU n 1 33 SER n 1 34 HIS n 1 35 PHE n 1 36 LEU n 1 37 LYS n 1 38 GLU n 1 39 LYS n 1 40 GLY n 1 41 GLY n 1 42 LEU n 1 43 GLU n 1 44 GLY n 1 45 LEU n 1 46 ILE n 1 47 HIS n 1 48 SER n 1 49 GLN n 1 50 ARG n 1 51 ARG n 1 52 GLN n 1 53 ASP n 1 54 ILE n 1 55 LEU n 1 56 ASP n 1 57 LEU n 1 58 TRP n 1 59 ILE n 1 60 TYR n 1 61 HIS n 1 62 THR n 1 63 GLN n 1 64 GLY n 1 65 TYR n 1 66 PHE n 1 67 PRO n 1 68 ASP n 1 69 TRP n 1 70 GLN n 1 71 ASN n 1 72 TYR n 1 73 THR n 1 74 PRO n 1 75 GLY n 1 76 PRO n 1 77 GLY n 1 78 VAL n 1 79 ARG n 1 80 TYR n 1 81 PRO n 1 82 LEU n 1 83 THR n 1 84 PHE n 1 85 GLY n 1 86 TRP n 1 87 CYS n 1 88 TYR n 1 89 LYS n 1 90 LEU n 1 91 VAL n 1 92 PRO n 1 93 VAL n 1 94 GLU n 1 95 PRO n 1 96 ASP n 1 97 LYS n 1 98 VAL n 1 99 GLU n 1 100 GLU n 1 101 ALA n 1 102 ASN n 1 103 LYS n 1 104 GLY n 1 105 GLU n 1 106 ASN n 1 107 THR n 1 108 SER n 1 109 LEU n 1 110 LEU n 1 111 HIS n 1 112 PRO n 1 113 VAL n 1 114 SER n 1 115 LEU n 1 116 HIS n 1 117 GLY n 1 118 MET n 1 119 ASP n 1 120 ASP n 1 121 PRO n 1 122 GLU n 1 123 ARG n 1 124 GLU n 1 125 VAL n 1 126 LEU n 1 127 GLU n 1 128 TRP n 1 129 ARG n 1 130 PHE n 1 131 ASP n 1 132 SER n 1 133 ARG n 1 134 LEU n 1 135 ALA n 1 136 PHE n 1 137 HIS n 1 138 HIS n 1 139 VAL n 1 140 ALA n 1 141 ARG n 1 142 GLU n 1 143 LEU n 1 144 HIS n 1 145 PRO n 1 146 GLU n 1 147 TYR n 1 148 PHE n 1 149 LYS n 1 150 ASN n 1 151 CYS n 2 1 THR n 2 2 LEU n 2 3 PHE n 2 4 VAL n 2 5 ALA n 2 6 LEU n 2 7 TYR n 2 8 ASP n 2 9 TYR n 2 10 GLU n 2 11 ALA n 2 12 ARG n 2 13 THR n 2 14 GLU n 2 15 ASP n 2 16 ASP n 2 17 LEU n 2 18 SER n 2 19 PHE n 2 20 HIS n 2 21 LYS n 2 22 GLY n 2 23 GLU n 2 24 LYS n 2 25 PHE n 2 26 GLN n 2 27 ILE n 2 28 LEU n 2 29 ASN n 2 30 SER n 2 31 SER n 2 32 GLU n 2 33 GLY n 2 34 ASP n 2 35 TRP n 2 36 TRP n 2 37 GLU n 2 38 ALA n 2 39 ARG n 2 40 SER n 2 41 LEU n 2 42 THR n 2 43 THR n 2 44 GLY n 2 45 GLU n 2 46 THR n 2 47 GLY n 2 48 TYR n 2 49 ILE n 2 50 PRO n 2 51 SER n 2 52 ASN n 2 53 TYR n 2 54 VAL n 2 55 ALA n 2 56 PRO n 2 57 VAL n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Lentivirus 'HIV-1 NEF' ? ? ? ? ? ? 'Human immunodeficiency virus 1' 11676 'LAI ISOLATE' BL21 ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21 (DE3)' ? ? ? ? ? ? ? ? ? ? ? PGEX-2T ? ? 2 1 sample ? ? ? human Homo 'FYN TYROSINE KINASE' ? ? ? ? ? ? 'Homo sapiens' 9606 ? BL21 ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21 (DE3)' ? ? ? ? ? ? ? ? ? ? ? PGEX-2T ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 56 ? ? ? A . n A 1 2 SER 2 57 ? ? ? A . n A 1 3 LEU 3 58 ? ? ? A . n A 1 4 GLU 4 59 ? ? ? A . n A 1 5 ALA 5 60 ? ? ? A . n A 1 6 GLN 6 61 ? ? ? A . n A 1 7 GLU 7 62 ? ? ? A . n A 1 8 GLU 8 63 ? ? ? A . n A 1 9 GLU 9 64 ? ? ? A . n A 1 10 GLU 10 65 ? ? ? A . n A 1 11 VAL 11 66 ? ? ? A . n A 1 12 GLY 12 67 ? ? ? A . n A 1 13 PHE 13 68 ? ? ? A . n A 1 14 PRO 14 69 ? ? ? A . n A 1 15 VAL 15 70 ? ? ? A . n A 1 16 THR 16 71 ? ? ? A . n A 1 17 PRO 17 72 ? ? ? A . n A 1 18 GLN 18 73 ? ? ? A . n A 1 19 VAL 19 74 74 VAL VAL A . n A 1 20 PRO 20 75 75 PRO PRO A . n A 1 21 LEU 21 76 76 LEU LEU A . n A 1 22 ARG 22 77 77 ARG ARG A . n A 1 23 PRO 23 78 78 PRO PRO A . n A 1 24 MET 24 79 79 MET MET A . n A 1 25 THR 25 80 80 THR THR A . n A 1 26 TYR 26 81 81 TYR TYR A . n A 1 27 LYS 27 82 82 LYS LYS A . n A 1 28 ALA 28 83 83 ALA ALA A . n A 1 29 ALA 29 84 84 ALA ALA A . n A 1 30 VAL 30 85 85 VAL VAL A . n A 1 31 ASP 31 86 86 ASP ASP A . n A 1 32 LEU 32 87 87 LEU LEU A . n A 1 33 SER 33 88 88 SER SER A . n A 1 34 HIS 34 89 89 HIS HIS A . n A 1 35 PHE 35 90 90 PHE PHE A . n A 1 36 LEU 36 91 91 LEU LEU A . n A 1 37 LYS 37 92 92 LYS LYS A . n A 1 38 GLU 38 93 93 GLU GLU A . n A 1 39 LYS 39 94 94 LYS LYS A . n A 1 40 GLY 40 95 95 GLY GLY A . n A 1 41 GLY 41 96 96 GLY GLY A . n A 1 42 LEU 42 97 97 LEU LEU A . n A 1 43 GLU 43 98 98 GLU GLU A . n A 1 44 GLY 44 99 99 GLY GLY A . n A 1 45 LEU 45 100 100 LEU LEU A . n A 1 46 ILE 46 101 101 ILE ILE A . n A 1 47 HIS 47 102 102 HIS HIS A . n A 1 48 SER 48 103 103 SER SER A . n A 1 49 GLN 49 104 104 GLN GLN A . n A 1 50 ARG 50 105 105 ARG ARG A . n A 1 51 ARG 51 106 106 ARG ARG A . n A 1 52 GLN 52 107 107 GLN GLN A . n A 1 53 ASP 53 108 108 ASP ASP A . n A 1 54 ILE 54 109 109 ILE ILE A . n A 1 55 LEU 55 110 110 LEU LEU A . n A 1 56 ASP 56 111 111 ASP ASP A . n A 1 57 LEU 57 112 112 LEU LEU A . n A 1 58 TRP 58 113 113 TRP TRP A . n A 1 59 ILE 59 114 114 ILE ILE A . n A 1 60 TYR 60 115 115 TYR TYR A . n A 1 61 HIS 61 116 116 HIS HIS A . n A 1 62 THR 62 117 117 THR THR A . n A 1 63 GLN 63 118 118 GLN GLN A . n A 1 64 GLY 64 119 119 GLY GLY A . n A 1 65 TYR 65 120 120 TYR TYR A . n A 1 66 PHE 66 121 121 PHE PHE A . n A 1 67 PRO 67 122 122 PRO PRO A . n A 1 68 ASP 68 123 123 ASP ASP A . n A 1 69 TRP 69 124 124 TRP TRP A . n A 1 70 GLN 70 125 125 GLN GLN A . n A 1 71 ASN 71 126 126 ASN ASN A . n A 1 72 TYR 72 127 127 TYR TYR A . n A 1 73 THR 73 128 128 THR THR A . n A 1 74 PRO 74 129 129 PRO PRO A . n A 1 75 GLY 75 130 130 GLY GLY A . n A 1 76 PRO 76 131 131 PRO PRO A . n A 1 77 GLY 77 132 132 GLY GLY A . n A 1 78 VAL 78 133 133 VAL VAL A . n A 1 79 ARG 79 134 134 ARG ARG A . n A 1 80 TYR 80 135 135 TYR TYR A . n A 1 81 PRO 81 136 136 PRO PRO A . n A 1 82 LEU 82 137 137 LEU LEU A . n A 1 83 THR 83 138 138 THR THR A . n A 1 84 PHE 84 139 139 PHE PHE A . n A 1 85 GLY 85 140 140 GLY GLY A . n A 1 86 TRP 86 141 141 TRP TRP A . n A 1 87 CYS 87 142 142 CYS CYS A . n A 1 88 TYR 88 143 143 TYR TYR A . n A 1 89 LYS 89 144 144 LYS LYS A . n A 1 90 LEU 90 145 145 LEU LEU A . n A 1 91 VAL 91 146 146 VAL VAL A . n A 1 92 PRO 92 147 147 PRO PRO A . n A 1 93 VAL 93 148 148 VAL VAL A . n A 1 94 GLU 94 149 ? ? ? A . n A 1 95 PRO 95 150 ? ? ? A . n A 1 96 ASP 96 151 ? ? ? A . n A 1 97 LYS 97 152 ? ? ? A . n A 1 98 VAL 98 153 ? ? ? A . n A 1 99 GLU 99 154 ? ? ? A . n A 1 100 GLU 100 155 ? ? ? A . n A 1 101 ALA 101 156 ? ? ? A . n A 1 102 ASN 102 157 ? ? ? A . n A 1 103 LYS 103 158 ? ? ? A . n A 1 104 GLY 104 159 ? ? ? A . n A 1 105 GLU 105 160 ? ? ? A . n A 1 106 ASN 106 161 ? ? ? A . n A 1 107 THR 107 162 ? ? ? A . n A 1 108 SER 108 163 ? ? ? A . n A 1 109 LEU 109 164 ? ? ? A . n A 1 110 LEU 110 165 ? ? ? A . n A 1 111 HIS 111 166 ? ? ? A . n A 1 112 PRO 112 167 ? ? ? A . n A 1 113 VAL 113 168 ? ? ? A . n A 1 114 SER 114 169 ? ? ? A . n A 1 115 LEU 115 170 ? ? ? A . n A 1 116 HIS 116 171 ? ? ? A . n A 1 117 GLY 117 172 ? ? ? A . n A 1 118 MET 118 173 ? ? ? A . n A 1 119 ASP 119 174 ? ? ? A . n A 1 120 ASP 120 175 ? ? ? A . n A 1 121 PRO 121 176 ? ? ? A . n A 1 122 GLU 122 177 ? ? ? A . n A 1 123 ARG 123 178 ? ? ? A . n A 1 124 GLU 124 179 179 GLU GLU A . n A 1 125 VAL 125 180 180 VAL VAL A . n A 1 126 LEU 126 181 181 LEU LEU A . n A 1 127 GLU 127 182 182 GLU GLU A . n A 1 128 TRP 128 183 183 TRP TRP A . n A 1 129 ARG 129 184 184 ARG ARG A . n A 1 130 PHE 130 185 185 PHE PHE A . n A 1 131 ASP 131 186 186 ASP ASP A . n A 1 132 SER 132 187 187 SER SER A . n A 1 133 ARG 133 188 188 ARG ARG A . n A 1 134 LEU 134 189 189 LEU LEU A . n A 1 135 ALA 135 190 190 ALA ALA A . n A 1 136 PHE 136 191 191 PHE PHE A . n A 1 137 HIS 137 192 192 HIS HIS A . n A 1 138 HIS 138 193 193 HIS HIS A . n A 1 139 VAL 139 194 194 VAL VAL A . n A 1 140 ALA 140 195 195 ALA ALA A . n A 1 141 ARG 141 196 196 ARG ARG A . n A 1 142 GLU 142 197 197 GLU GLU A . n A 1 143 LEU 143 198 198 LEU LEU A . n A 1 144 HIS 144 199 199 HIS HIS A . n A 1 145 PRO 145 200 200 PRO PRO A . n A 1 146 GLU 146 201 201 GLU GLU A . n A 1 147 TYR 147 202 202 TYR TYR A . n A 1 148 PHE 148 203 203 PHE PHE A . n A 1 149 LYS 149 204 ? ? ? A . n A 1 150 ASN 150 205 ? ? ? A . n A 1 151 CYS 151 206 ? ? ? A . n B 1 1 GLY 1 56 ? ? ? B . n B 1 2 SER 2 57 ? ? ? B . n B 1 3 LEU 3 58 ? ? ? B . n B 1 4 GLU 4 59 ? ? ? B . n B 1 5 ALA 5 60 ? ? ? B . n B 1 6 GLN 6 61 ? ? ? B . n B 1 7 GLU 7 62 ? ? ? B . n B 1 8 GLU 8 63 ? ? ? B . n B 1 9 GLU 9 64 ? ? ? B . n B 1 10 GLU 10 65 ? ? ? B . n B 1 11 VAL 11 66 ? ? ? B . n B 1 12 GLY 12 67 ? ? ? B . n B 1 13 PHE 13 68 ? ? ? B . n B 1 14 PRO 14 69 ? ? ? B . n B 1 15 VAL 15 70 ? ? ? B . n B 1 16 THR 16 71 71 THR THR B . n B 1 17 PRO 17 72 72 PRO PRO B . n B 1 18 GLN 18 73 73 GLN GLN B . n B 1 19 VAL 19 74 74 VAL VAL B . n B 1 20 PRO 20 75 75 PRO PRO B . n B 1 21 LEU 21 76 76 LEU LEU B . n B 1 22 ARG 22 77 77 ARG ARG B . n B 1 23 PRO 23 78 78 PRO PRO B . n B 1 24 MET 24 79 79 MET MET B . n B 1 25 THR 25 80 80 THR THR B . n B 1 26 TYR 26 81 81 TYR TYR B . n B 1 27 LYS 27 82 82 LYS LYS B . n B 1 28 ALA 28 83 83 ALA ALA B . n B 1 29 ALA 29 84 84 ALA ALA B . n B 1 30 VAL 30 85 85 VAL VAL B . n B 1 31 ASP 31 86 86 ASP ASP B . n B 1 32 LEU 32 87 87 LEU LEU B . n B 1 33 SER 33 88 88 SER SER B . n B 1 34 HIS 34 89 89 HIS HIS B . n B 1 35 PHE 35 90 90 PHE PHE B . n B 1 36 LEU 36 91 91 LEU LEU B . n B 1 37 LYS 37 92 92 LYS LYS B . n B 1 38 GLU 38 93 93 GLU GLU B . n B 1 39 LYS 39 94 94 LYS LYS B . n B 1 40 GLY 40 95 95 GLY GLY B . n B 1 41 GLY 41 96 96 GLY GLY B . n B 1 42 LEU 42 97 97 LEU LEU B . n B 1 43 GLU 43 98 98 GLU GLU B . n B 1 44 GLY 44 99 99 GLY GLY B . n B 1 45 LEU 45 100 100 LEU LEU B . n B 1 46 ILE 46 101 101 ILE ILE B . n B 1 47 HIS 47 102 102 HIS HIS B . n B 1 48 SER 48 103 103 SER SER B . n B 1 49 GLN 49 104 104 GLN GLN B . n B 1 50 ARG 50 105 105 ARG ARG B . n B 1 51 ARG 51 106 106 ARG ARG B . n B 1 52 GLN 52 107 107 GLN GLN B . n B 1 53 ASP 53 108 108 ASP ASP B . n B 1 54 ILE 54 109 109 ILE ILE B . n B 1 55 LEU 55 110 110 LEU LEU B . n B 1 56 ASP 56 111 111 ASP ASP B . n B 1 57 LEU 57 112 112 LEU LEU B . n B 1 58 TRP 58 113 113 TRP TRP B . n B 1 59 ILE 59 114 114 ILE ILE B . n B 1 60 TYR 60 115 115 TYR TYR B . n B 1 61 HIS 61 116 116 HIS HIS B . n B 1 62 THR 62 117 117 THR THR B . n B 1 63 GLN 63 118 118 GLN GLN B . n B 1 64 GLY 64 119 119 GLY GLY B . n B 1 65 TYR 65 120 120 TYR TYR B . n B 1 66 PHE 66 121 121 PHE PHE B . n B 1 67 PRO 67 122 122 PRO PRO B . n B 1 68 ASP 68 123 123 ASP ASP B . n B 1 69 TRP 69 124 124 TRP TRP B . n B 1 70 GLN 70 125 125 GLN GLN B . n B 1 71 ASN 71 126 126 ASN ASN B . n B 1 72 TYR 72 127 127 TYR TYR B . n B 1 73 THR 73 128 128 THR THR B . n B 1 74 PRO 74 129 129 PRO PRO B . n B 1 75 GLY 75 130 130 GLY GLY B . n B 1 76 PRO 76 131 131 PRO PRO B . n B 1 77 GLY 77 132 132 GLY GLY B . n B 1 78 VAL 78 133 133 VAL VAL B . n B 1 79 ARG 79 134 134 ARG ARG B . n B 1 80 TYR 80 135 135 TYR TYR B . n B 1 81 PRO 81 136 136 PRO PRO B . n B 1 82 LEU 82 137 137 LEU LEU B . n B 1 83 THR 83 138 138 THR THR B . n B 1 84 PHE 84 139 139 PHE PHE B . n B 1 85 GLY 85 140 140 GLY GLY B . n B 1 86 TRP 86 141 141 TRP TRP B . n B 1 87 CYS 87 142 142 CYS CYS B . n B 1 88 TYR 88 143 143 TYR TYR B . n B 1 89 LYS 89 144 144 LYS LYS B . n B 1 90 LEU 90 145 145 LEU LEU B . n B 1 91 VAL 91 146 146 VAL VAL B . n B 1 92 PRO 92 147 147 PRO PRO B . n B 1 93 VAL 93 148 148 VAL VAL B . n B 1 94 GLU 94 149 ? ? ? B . n B 1 95 PRO 95 150 ? ? ? B . n B 1 96 ASP 96 151 ? ? ? B . n B 1 97 LYS 97 152 ? ? ? B . n B 1 98 VAL 98 153 ? ? ? B . n B 1 99 GLU 99 154 ? ? ? B . n B 1 100 GLU 100 155 ? ? ? B . n B 1 101 ALA 101 156 ? ? ? B . n B 1 102 ASN 102 157 ? ? ? B . n B 1 103 LYS 103 158 ? ? ? B . n B 1 104 GLY 104 159 ? ? ? B . n B 1 105 GLU 105 160 ? ? ? B . n B 1 106 ASN 106 161 ? ? ? B . n B 1 107 THR 107 162 ? ? ? B . n B 1 108 SER 108 163 ? ? ? B . n B 1 109 LEU 109 164 ? ? ? B . n B 1 110 LEU 110 165 ? ? ? B . n B 1 111 HIS 111 166 ? ? ? B . n B 1 112 PRO 112 167 ? ? ? B . n B 1 113 VAL 113 168 ? ? ? B . n B 1 114 SER 114 169 ? ? ? B . n B 1 115 LEU 115 170 ? ? ? B . n B 1 116 HIS 116 171 ? ? ? B . n B 1 117 GLY 117 172 ? ? ? B . n B 1 118 MET 118 173 ? ? ? B . n B 1 119 ASP 119 174 ? ? ? B . n B 1 120 ASP 120 175 ? ? ? B . n B 1 121 PRO 121 176 ? ? ? B . n B 1 122 GLU 122 177 ? ? ? B . n B 1 123 ARG 123 178 ? ? ? B . n B 1 124 GLU 124 179 179 GLU GLU B . n B 1 125 VAL 125 180 180 VAL VAL B . n B 1 126 LEU 126 181 181 LEU LEU B . n B 1 127 GLU 127 182 182 GLU GLU B . n B 1 128 TRP 128 183 183 TRP TRP B . n B 1 129 ARG 129 184 184 ARG ARG B . n B 1 130 PHE 130 185 185 PHE PHE B . n B 1 131 ASP 131 186 186 ASP ASP B . n B 1 132 SER 132 187 187 SER SER B . n B 1 133 ARG 133 188 188 ARG ARG B . n B 1 134 LEU 134 189 189 LEU LEU B . n B 1 135 ALA 135 190 190 ALA ALA B . n B 1 136 PHE 136 191 191 PHE PHE B . n B 1 137 HIS 137 192 192 HIS HIS B . n B 1 138 HIS 138 193 193 HIS HIS B . n B 1 139 VAL 139 194 194 VAL VAL B . n B 1 140 ALA 140 195 195 ALA ALA B . n B 1 141 ARG 141 196 196 ARG ARG B . n B 1 142 GLU 142 197 197 GLU GLU B . n B 1 143 LEU 143 198 198 LEU LEU B . n B 1 144 HIS 144 199 199 HIS HIS B . n B 1 145 PRO 145 200 200 PRO PRO B . n B 1 146 GLU 146 201 201 GLU GLU B . n B 1 147 TYR 147 202 202 TYR TYR B . n B 1 148 PHE 148 203 203 PHE PHE B . n B 1 149 LYS 149 204 ? ? ? B . n B 1 150 ASN 150 205 ? ? ? B . n B 1 151 CYS 151 206 ? ? ? B . n C 2 1 THR 1 85 85 THR THR C . n C 2 2 LEU 2 86 86 LEU LEU C . n C 2 3 PHE 3 87 87 PHE PHE C . n C 2 4 VAL 4 88 88 VAL VAL C . n C 2 5 ALA 5 89 89 ALA ALA C . n C 2 6 LEU 6 90 90 LEU LEU C . n C 2 7 TYR 7 91 91 TYR TYR C . n C 2 8 ASP 8 92 92 ASP ASP C . n C 2 9 TYR 9 93 93 TYR TYR C . n C 2 10 GLU 10 94 94 GLU GLU C . n C 2 11 ALA 11 95 95 ALA ALA C . n C 2 12 ARG 12 96 96 ARG ARG C . n C 2 13 THR 13 97 97 THR THR C . n C 2 14 GLU 14 98 98 GLU GLU C . n C 2 15 ASP 15 99 99 ASP ASP C . n C 2 16 ASP 16 100 100 ASP ASP C . n C 2 17 LEU 17 101 101 LEU LEU C . n C 2 18 SER 18 102 102 SER SER C . n C 2 19 PHE 19 103 103 PHE PHE C . n C 2 20 HIS 20 104 104 HIS HIS C . n C 2 21 LYS 21 105 105 LYS LYS C . n C 2 22 GLY 22 106 106 GLY GLY C . n C 2 23 GLU 23 107 107 GLU GLU C . n C 2 24 LYS 24 108 108 LYS LYS C . n C 2 25 PHE 25 109 109 PHE PHE C . n C 2 26 GLN 26 110 110 GLN GLN C . n C 2 27 ILE 27 111 111 ILE ILE C . n C 2 28 LEU 28 112 112 LEU LEU C . n C 2 29 ASN 29 113 113 ASN ASN C . n C 2 30 SER 30 114 114 SER SER C . n C 2 31 SER 31 115 115 SER SER C . n C 2 32 GLU 32 116 116 GLU GLU C . n C 2 33 GLY 33 117 117 GLY GLY C . n C 2 34 ASP 34 118 118 ASP ASP C . n C 2 35 TRP 35 119 119 TRP TRP C . n C 2 36 TRP 36 120 120 TRP TRP C . n C 2 37 GLU 37 121 121 GLU GLU C . n C 2 38 ALA 38 122 122 ALA ALA C . n C 2 39 ARG 39 123 123 ARG ARG C . n C 2 40 SER 40 124 124 SER SER C . n C 2 41 LEU 41 125 125 LEU LEU C . n C 2 42 THR 42 126 126 THR THR C . n C 2 43 THR 43 127 127 THR THR C . n C 2 44 GLY 44 128 128 GLY GLY C . n C 2 45 GLU 45 129 129 GLU GLU C . n C 2 46 THR 46 130 130 THR THR C . n C 2 47 GLY 47 131 131 GLY GLY C . n C 2 48 TYR 48 132 132 TYR TYR C . n C 2 49 ILE 49 133 133 ILE ILE C . n C 2 50 PRO 50 134 134 PRO PRO C . n C 2 51 SER 51 135 135 SER SER C . n C 2 52 ASN 52 136 136 ASN ASN C . n C 2 53 TYR 53 137 137 TYR TYR C . n C 2 54 VAL 54 138 138 VAL VAL C . n C 2 55 ALA 55 139 139 ALA ALA C . n C 2 56 PRO 56 140 140 PRO PRO C . n C 2 57 VAL 57 141 141 VAL VAL C . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.8 ? 1 X-PLOR refinement 3.8 ? 2 XDS 'data reduction' . ? 3 XSCALE 'data scaling' . ? 4 X-PLOR phasing 3.8 ? 5 # _cell.entry_id 1AVZ _cell.length_a 108.200 _cell.length_b 108.200 _cell.length_c 223.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AVZ _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # _exptl.entry_id 1AVZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.2 _exptl_crystal.density_percent_sol 70. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.9 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 8.9' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'PRINCETON 2K' _diffrn_detector.pdbx_collection_date 1996-10-04 _diffrn_detector.details 'TWO BENT MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0373 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM02' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM02 _diffrn_source.pdbx_wavelength 1.0373 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AVZ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.0 _reflns.d_resolution_high 3.0 _reflns.number_obs 14778 _reflns.number_all ? _reflns.percent_possible_obs 91. _reflns.pdbx_Rmerge_I_obs 0.0670000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1AVZ _refine.ls_number_reflns_obs 11662 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30. _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs 75.6 _refine.ls_R_factor_obs 0.2200000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2200000 _refine.ls_R_factor_R_free 0.2700000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 33.0 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRIES 1EFN AND 1SHF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2216 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2216 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low 30. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.1 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.21 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1AVZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AVZ _struct.title 'V-1 NEF PROTEIN IN COMPLEX WITH WILD TYPE FYN SH3 DOMAIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AVZ _struct_keywords.pdbx_keywords 'COMPLEX (MYRISTYLATION/TRANSFERASE)' _struct_keywords.text ;COMPLEX (MYRISTYLATION-TRANSFERASE), GTP-BINDING, HIV-1, PHOSPHORYLATION, NEF, SH3 DOMAIN, FYN, TYROSINE KINASE, COMPLEX (MYRISTYLATION-TRANSFERASE) complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP NEF_HV1BR 1 P03406 1 ;MGGKWSKSSVVGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMT YKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKVEEANKGE NTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC ; ? 2 UNP FYN_HUMAN 2 P06241 1 ;GCVQCKDKEATKLTEERDGSLNQSSGYRYGTDPTPQHYPSFGVTSIPNYNNFHAAGGQGLTVFGGVNSSSHTGTLRTRGG TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAER QLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLCCR LVVPCHKGMPRLTDLSVKTKDVWEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKL KHDKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNG LICKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVER GYRMPCPQDCPISLHELMIHCWKKDPEERPTFEYLQSFLEDYFTATEPQYQPGENL ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AVZ A 3 ? 151 ? P03406 58 ? 206 ? 58 206 2 1 1AVZ B 3 ? 151 ? P03406 58 ? 206 ? 58 206 3 2 1AVZ C 1 ? 57 ? P06241 84 ? 140 ? 85 141 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 26 ? LYS A 39 ? TYR A 81 LYS A 94 1 ? 14 HELX_P HELX_P2 2 GLN A 49 ? THR A 62 ? GLN A 104 THR A 117 1 ? 14 HELX_P HELX_P3 3 SER A 132 ? ALA A 135 ? SER A 187 ALA A 190 5 ? 4 HELX_P HELX_P4 4 VAL A 139 ? GLU A 142 ? VAL A 194 GLU A 197 1 ? 4 HELX_P HELX_P5 5 TYR B 26 ? LYS B 39 ? TYR B 81 LYS B 94 1 ? 14 HELX_P HELX_P6 6 GLN B 49 ? THR B 62 ? GLN B 104 THR B 117 1 ? 14 HELX_P HELX_P7 7 SER B 132 ? ALA B 135 ? SER B 187 ALA B 190 5 ? 4 HELX_P HELX_P8 8 VAL B 139 ? GLU B 142 ? VAL B 194 GLU B 197 1 ? 4 HELX_P HELX_P9 9 SER C 51 ? TYR C 53 ? SER C 135 TYR C 137 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 75 A . ? GLY 130 A PRO 76 A ? PRO 131 A 1 0.11 2 GLY 75 B . ? GLY 130 B PRO 76 B ? PRO 131 B 1 -0.35 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 88 ? PRO A 92 ? TYR A 143 PRO A 147 A 2 LEU A 126 ? PHE A 130 ? LEU A 181 PHE A 185 B 1 TYR B 88 ? PRO B 92 ? TYR B 143 PRO B 147 B 2 LEU B 126 ? PHE B 130 ? LEU B 181 PHE B 185 C 1 TRP C 35 ? ARG C 39 ? TRP C 119 ARG C 123 C 2 THR C 46 ? PRO C 50 ? THR C 130 PRO C 134 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 89 ? O LYS A 144 N ARG A 129 ? N ARG A 184 B 1 2 O LYS B 89 ? O LYS B 144 N ARG B 129 ? N ARG B 184 C 1 2 O TRP C 36 ? O TRP C 120 N ILE C 49 ? N ILE C 133 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 PHE _pdbx_validate_rmsd_angle.auth_seq_id_1 121 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 122 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 122 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 130.95 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 11.65 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 79 ? ? -68.12 97.24 2 1 PRO A 122 ? ? -54.06 44.29 3 1 CYS A 142 ? ? -87.92 36.00 4 1 ALA A 195 ? ? -68.93 10.08 5 1 ARG A 196 ? ? -132.38 -30.99 6 1 HIS A 199 ? ? -117.88 68.55 7 1 TYR A 202 ? ? -63.12 0.82 8 1 PRO B 75 ? ? -49.28 162.08 9 1 LEU B 110 ? ? -61.53 -73.62 10 1 PRO B 122 ? ? -60.22 51.69 11 1 CYS B 142 ? ? -76.01 25.50 12 1 LEU B 198 ? ? -91.00 -70.49 13 1 TYR B 202 ? ? -55.49 -0.77 14 1 LYS C 105 ? ? -30.50 102.46 15 1 GLN C 110 ? ? -169.51 112.76 16 1 ASN C 113 ? ? -161.26 94.47 17 1 SER C 115 ? ? -67.73 67.56 18 1 GLU C 116 ? ? -170.69 -3.33 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 56 ? A GLY 1 2 1 Y 1 A SER 57 ? A SER 2 3 1 Y 1 A LEU 58 ? A LEU 3 4 1 Y 1 A GLU 59 ? A GLU 4 5 1 Y 1 A ALA 60 ? A ALA 5 6 1 Y 1 A GLN 61 ? A GLN 6 7 1 Y 1 A GLU 62 ? A GLU 7 8 1 Y 1 A GLU 63 ? A GLU 8 9 1 Y 1 A GLU 64 ? A GLU 9 10 1 Y 1 A GLU 65 ? A GLU 10 11 1 Y 1 A VAL 66 ? A VAL 11 12 1 Y 1 A GLY 67 ? A GLY 12 13 1 Y 1 A PHE 68 ? A PHE 13 14 1 Y 1 A PRO 69 ? A PRO 14 15 1 Y 1 A VAL 70 ? A VAL 15 16 1 Y 1 A THR 71 ? A THR 16 17 1 Y 1 A PRO 72 ? A PRO 17 18 1 Y 1 A GLN 73 ? A GLN 18 19 1 Y 1 A GLU 149 ? A GLU 94 20 1 Y 1 A PRO 150 ? A PRO 95 21 1 Y 1 A ASP 151 ? A ASP 96 22 1 Y 1 A LYS 152 ? A LYS 97 23 1 Y 1 A VAL 153 ? A VAL 98 24 1 Y 1 A GLU 154 ? A GLU 99 25 1 Y 1 A GLU 155 ? A GLU 100 26 1 Y 1 A ALA 156 ? A ALA 101 27 1 Y 1 A ASN 157 ? A ASN 102 28 1 Y 1 A LYS 158 ? A LYS 103 29 1 Y 1 A GLY 159 ? A GLY 104 30 1 Y 1 A GLU 160 ? A GLU 105 31 1 Y 1 A ASN 161 ? A ASN 106 32 1 Y 1 A THR 162 ? A THR 107 33 1 Y 1 A SER 163 ? A SER 108 34 1 Y 1 A LEU 164 ? A LEU 109 35 1 Y 1 A LEU 165 ? A LEU 110 36 1 Y 1 A HIS 166 ? A HIS 111 37 1 Y 1 A PRO 167 ? A PRO 112 38 1 Y 1 A VAL 168 ? A VAL 113 39 1 Y 1 A SER 169 ? A SER 114 40 1 Y 1 A LEU 170 ? A LEU 115 41 1 Y 1 A HIS 171 ? A HIS 116 42 1 Y 1 A GLY 172 ? A GLY 117 43 1 Y 1 A MET 173 ? A MET 118 44 1 Y 1 A ASP 174 ? A ASP 119 45 1 Y 1 A ASP 175 ? A ASP 120 46 1 Y 1 A PRO 176 ? A PRO 121 47 1 Y 1 A GLU 177 ? A GLU 122 48 1 Y 1 A ARG 178 ? A ARG 123 49 1 Y 1 A LYS 204 ? A LYS 149 50 1 Y 1 A ASN 205 ? A ASN 150 51 1 Y 1 A CYS 206 ? A CYS 151 52 1 Y 1 B GLY 56 ? B GLY 1 53 1 Y 1 B SER 57 ? B SER 2 54 1 Y 1 B LEU 58 ? B LEU 3 55 1 Y 1 B GLU 59 ? B GLU 4 56 1 Y 1 B ALA 60 ? B ALA 5 57 1 Y 1 B GLN 61 ? B GLN 6 58 1 Y 1 B GLU 62 ? B GLU 7 59 1 Y 1 B GLU 63 ? B GLU 8 60 1 Y 1 B GLU 64 ? B GLU 9 61 1 Y 1 B GLU 65 ? B GLU 10 62 1 Y 1 B VAL 66 ? B VAL 11 63 1 Y 1 B GLY 67 ? B GLY 12 64 1 Y 1 B PHE 68 ? B PHE 13 65 1 Y 1 B PRO 69 ? B PRO 14 66 1 Y 1 B VAL 70 ? B VAL 15 67 1 Y 1 B GLU 149 ? B GLU 94 68 1 Y 1 B PRO 150 ? B PRO 95 69 1 Y 1 B ASP 151 ? B ASP 96 70 1 Y 1 B LYS 152 ? B LYS 97 71 1 Y 1 B VAL 153 ? B VAL 98 72 1 Y 1 B GLU 154 ? B GLU 99 73 1 Y 1 B GLU 155 ? B GLU 100 74 1 Y 1 B ALA 156 ? B ALA 101 75 1 Y 1 B ASN 157 ? B ASN 102 76 1 Y 1 B LYS 158 ? B LYS 103 77 1 Y 1 B GLY 159 ? B GLY 104 78 1 Y 1 B GLU 160 ? B GLU 105 79 1 Y 1 B ASN 161 ? B ASN 106 80 1 Y 1 B THR 162 ? B THR 107 81 1 Y 1 B SER 163 ? B SER 108 82 1 Y 1 B LEU 164 ? B LEU 109 83 1 Y 1 B LEU 165 ? B LEU 110 84 1 Y 1 B HIS 166 ? B HIS 111 85 1 Y 1 B PRO 167 ? B PRO 112 86 1 Y 1 B VAL 168 ? B VAL 113 87 1 Y 1 B SER 169 ? B SER 114 88 1 Y 1 B LEU 170 ? B LEU 115 89 1 Y 1 B HIS 171 ? B HIS 116 90 1 Y 1 B GLY 172 ? B GLY 117 91 1 Y 1 B MET 173 ? B MET 118 92 1 Y 1 B ASP 174 ? B ASP 119 93 1 Y 1 B ASP 175 ? B ASP 120 94 1 Y 1 B PRO 176 ? B PRO 121 95 1 Y 1 B GLU 177 ? B GLU 122 96 1 Y 1 B ARG 178 ? B ARG 123 97 1 Y 1 B LYS 204 ? B LYS 149 98 1 Y 1 B ASN 205 ? B ASN 150 99 1 Y 1 B CYS 206 ? B CYS 151 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1EFN 'PDB ENTRIES 1EFN AND 1SHF' 2 ? 'experimental model' PDB 1SHF 'PDB ENTRIES 1EFN AND 1SHF' # _atom_sites.entry_id 1AVZ _atom_sites.fract_transf_matrix[1][1] 0.009242 _atom_sites.fract_transf_matrix[1][2] 0.005336 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010672 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004470 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_