data_1AWU # _entry.id 1AWU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AWU pdb_00001awu 10.2210/pdb1awu/pdb WWPDB D_1000171353 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AWU _pdbx_database_status.recvd_initial_deposition_date 1997-10-05 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Vajdos, F.F.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of cyclophilin A complexed with a binding site peptide from the HIV-1 capsid protein.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 6 _citation.page_first 2297 _citation.page_last 2307 _citation.year 1997 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9385632 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vajdos, F.F.' 1 ? primary 'Yoo, S.' 2 ? primary 'Houseweart, M.' 3 ? primary 'Sundquist, W.I.' 4 ? primary 'Hill, C.P.' 5 ? # _cell.entry_id 1AWU _cell.length_a 52.400 _cell.length_b 52.400 _cell.length_c 63.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AWU _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CYCLOPHILIN A' 17905.307 1 5.2.1.8 ? ? ? 2 polymer man 'PEPTIDE FROM THE HIV-1 CAPSID PROTEIN' 593.695 1 ? ? ? ? 3 water nat water 18.015 13 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGE KFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADC GQLE ; ;VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGE KFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADC GQLE ; A ? 2 'polypeptide(L)' no no HVGPIA HVGPIA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ASN n 1 3 PRO n 1 4 THR n 1 5 VAL n 1 6 PHE n 1 7 PHE n 1 8 ASP n 1 9 ILE n 1 10 ALA n 1 11 VAL n 1 12 ASP n 1 13 GLY n 1 14 GLU n 1 15 PRO n 1 16 LEU n 1 17 GLY n 1 18 ARG n 1 19 VAL n 1 20 SER n 1 21 PHE n 1 22 GLU n 1 23 LEU n 1 24 PHE n 1 25 ALA n 1 26 ASP n 1 27 LYS n 1 28 VAL n 1 29 PRO n 1 30 LYS n 1 31 THR n 1 32 ALA n 1 33 GLU n 1 34 ASN n 1 35 PHE n 1 36 ARG n 1 37 ALA n 1 38 LEU n 1 39 SER n 1 40 THR n 1 41 GLY n 1 42 GLU n 1 43 LYS n 1 44 GLY n 1 45 PHE n 1 46 GLY n 1 47 TYR n 1 48 LYS n 1 49 GLY n 1 50 SER n 1 51 CYS n 1 52 PHE n 1 53 HIS n 1 54 ARG n 1 55 ILE n 1 56 ILE n 1 57 PRO n 1 58 GLY n 1 59 PHE n 1 60 MET n 1 61 CYS n 1 62 GLN n 1 63 GLY n 1 64 GLY n 1 65 ASP n 1 66 PHE n 1 67 THR n 1 68 ARG n 1 69 HIS n 1 70 ASN n 1 71 GLY n 1 72 THR n 1 73 GLY n 1 74 GLY n 1 75 LYS n 1 76 SER n 1 77 ILE n 1 78 TYR n 1 79 GLY n 1 80 GLU n 1 81 LYS n 1 82 PHE n 1 83 GLU n 1 84 ASP n 1 85 GLU n 1 86 ASN n 1 87 PHE n 1 88 ILE n 1 89 LEU n 1 90 LYS n 1 91 HIS n 1 92 THR n 1 93 GLY n 1 94 PRO n 1 95 GLY n 1 96 ILE n 1 97 LEU n 1 98 SER n 1 99 MET n 1 100 ALA n 1 101 ASN n 1 102 ALA n 1 103 GLY n 1 104 PRO n 1 105 ASN n 1 106 THR n 1 107 ASN n 1 108 GLY n 1 109 SER n 1 110 GLN n 1 111 PHE n 1 112 PHE n 1 113 ILE n 1 114 CYS n 1 115 THR n 1 116 ALA n 1 117 LYS n 1 118 THR n 1 119 GLU n 1 120 TRP n 1 121 LEU n 1 122 ASP n 1 123 GLY n 1 124 LYS n 1 125 HIS n 1 126 VAL n 1 127 VAL n 1 128 PHE n 1 129 GLY n 1 130 LYS n 1 131 VAL n 1 132 LYS n 1 133 GLU n 1 134 GLY n 1 135 MET n 1 136 ASN n 1 137 ILE n 1 138 VAL n 1 139 GLU n 1 140 ALA n 1 141 MET n 1 142 GLU n 1 143 ARG n 1 144 PHE n 1 145 GLY n 1 146 SER n 1 147 ARG n 1 148 ASN n 1 149 GLY n 1 150 LYS n 1 151 THR n 1 152 SER n 1 153 LYS n 1 154 LYS n 1 155 ILE n 1 156 THR n 1 157 ILE n 1 158 ALA n 1 159 ASP n 1 160 CYS n 1 161 GLY n 1 162 GLN n 1 163 LEU n 1 164 GLU n 2 1 HIS n 2 2 VAL n 2 3 GLY n 2 4 PRO n 2 5 ILE n 2 6 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene CYCLOPHILIN _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location CYTOPLASM _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene CYCLOPHILIN _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP PPIA_HUMAN 1 P62937 1 ;VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGE KFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADC GQLE ; ? 2 PDB 1AWU 2 1AWU ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AWU A 1 ? 164 ? P62937 1 ? 164 ? 1002 1165 2 2 1AWU B 1 ? 6 ? 1AWU 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1AWU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.70 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 8.4' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength 1.08 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AWU _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 2.34 _reflns.number_obs 7251 _reflns.number_all ? _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0470000 _reflns.pdbx_netI_over_sigmaI 17.6 _reflns.B_iso_Wilson_estimate 21.6 _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.34 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 78.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.1140000 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1AWU _refine.ls_number_reflns_obs 7049 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000000.0 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 2.34 _refine.ls_percent_reflns_obs 96.8 _refine.ls_R_factor_obs 0.3160000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.3160000 _refine.ls_R_factor_R_free 0.3510000 _refine.ls_R_factor_R_free_error 0.018 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.5 _refine.ls_number_reflns_R_free 387 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 27.6 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;BULK SOLVENT MODEL USED A LARGE NUMBER OF ATOMS WERE SET TO ZERO OCCUPANCY FOR REFINEMENT PURPOSES SINCE THEY WERE NOT WELL-DEFINED BY THE ELECTRON DENSITY. REGARDING THE HIGH R-VALUE: THIS IS THE STRUCTURE OF THE COMPLEX REFINED IN A PSEUDO-SPACE GROUP. THE DETAILS ARE ADDRESSED EXTENSIVELY IN THE PAPER. TO SUMMARIZE HERE, THE HIGH R-VALUE FOR THIS STRUCTURE STEMS FROM THE BREAKDOWN IN PSEUDO-SYMMETRY AT HIGH RESOLUTION. ; _refine.pdbx_starting_model 'PDB ENTRY 2CYH' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1AWU _refine_analyze.Luzzati_coordinate_error_obs 0.45 _refine_analyze.Luzzati_sigma_a_obs 0.55 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.58 _refine_analyze.Luzzati_sigma_a_free 0.70 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1258 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 1313 _refine_hist.d_res_high 2.34 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.7 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.35 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 5.58 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 7.79 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 7.55 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 8.76 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.34 _refine_ls_shell.d_res_low 2.49 _refine_ls_shell.number_reflns_R_work 990 _refine_ls_shell.R_factor_R_work 0.4380000 _refine_ls_shell.percent_reflns_obs 87.0 _refine_ls_shell.R_factor_R_free 0.4690000 _refine_ls_shell.R_factor_R_free_error 0.061 _refine_ls_shell.percent_reflns_R_free 5.6 _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 TIP3P.PARAMETER TIP3P.TOPOLOGY 'X-RAY DIFFRACTION' # _struct.entry_id 1AWU _struct.title 'CYPA COMPLEXED WITH HVGPIA (PSEUDO-SYMMETRIC MONOMER)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AWU _struct_keywords.pdbx_keywords 'COMPLEX (ISOMERASE/PEPTIDE)' _struct_keywords.text 'COMPLEX (ISOMERASE-PEPTIDE), CYCLOPHILIN A, HIV-1 CAPSID, PSEUDO-SYMMETRY, COMPLEX (ISOMERASE-PEPTIDE) complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 31 ? THR A 40 ? THR A 1032 THR A 1041 1 ? 10 HELX_P HELX_P2 2 GLU A 119 ? LEU A 121 ? GLU A 1120 LEU A 1122 5 ? 3 HELX_P HELX_P3 3 MET A 135 ? PHE A 144 ? MET A 1136 PHE A 1145 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 160 ? GLN A 162 ? CYS A 1161 GLN A 1163 A 2 THR A 4 ? ALA A 10 ? THR A 1005 ALA A 1011 A 3 PRO A 15 ? GLU A 22 ? PRO A 1016 GLU A 1023 B 1 ILE A 9 ? VAL A 11 ? ILE A 1010 VAL A 1012 B 2 ILE A 155 ? ILE A 157 ? ILE A 1156 ILE A 1158 C 1 ARG A 54 ? ILE A 56 ? ARG A 1055 ILE A 1057 C 2 MET A 60 ? GLY A 63 ? MET A 1061 GLY A 1064 C 3 PHE A 111 ? CYS A 114 ? PHE A 1112 CYS A 1115 C 4 ILE A 96 ? MET A 99 ? ILE A 1097 MET A 1100 C 5 VAL A 127 ? LYS A 130 ? VAL A 1128 LYS A 1131 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 161 ? O GLY A 1162 N PHE A 6 ? N PHE A 1007 A 2 3 O VAL A 5 ? O VAL A 1006 N PHE A 21 ? N PHE A 1022 B 1 2 O ALA A 10 ? O ALA A 1011 N THR A 156 ? N THR A 1157 C 1 2 O ARG A 54 ? O ARG A 1055 N GLN A 62 ? N GLN A 1063 C 2 3 O CYS A 61 ? O CYS A 1062 N ILE A 113 ? N ILE A 1114 C 3 4 O PHE A 112 ? O PHE A 1113 N SER A 98 ? N SER A 1099 C 4 5 O LEU A 97 ? O LEU A 1098 N GLY A 129 ? N GLY A 1130 # _database_PDB_matrix.entry_id 1AWU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AWU _atom_sites.fract_transf_matrix[1][1] 0.019084 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019084 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015773 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1002 1002 VAL VAL A . n A 1 2 ASN 2 1003 1003 ASN ASN A . n A 1 3 PRO 3 1004 1004 PRO PRO A . n A 1 4 THR 4 1005 1005 THR THR A . n A 1 5 VAL 5 1006 1006 VAL VAL A . n A 1 6 PHE 6 1007 1007 PHE PHE A . n A 1 7 PHE 7 1008 1008 PHE PHE A . n A 1 8 ASP 8 1009 1009 ASP ASP A . n A 1 9 ILE 9 1010 1010 ILE ILE A . n A 1 10 ALA 10 1011 1011 ALA ALA A . n A 1 11 VAL 11 1012 1012 VAL VAL A . n A 1 12 ASP 12 1013 1013 ASP ASP A . n A 1 13 GLY 13 1014 1014 GLY GLY A . n A 1 14 GLU 14 1015 1015 GLU GLU A . n A 1 15 PRO 15 1016 1016 PRO PRO A . n A 1 16 LEU 16 1017 1017 LEU LEU A . n A 1 17 GLY 17 1018 1018 GLY GLY A . n A 1 18 ARG 18 1019 1019 ARG ARG A . n A 1 19 VAL 19 1020 1020 VAL VAL A . n A 1 20 SER 20 1021 1021 SER SER A . n A 1 21 PHE 21 1022 1022 PHE PHE A . n A 1 22 GLU 22 1023 1023 GLU GLU A . n A 1 23 LEU 23 1024 1024 LEU LEU A . n A 1 24 PHE 24 1025 1025 PHE PHE A . n A 1 25 ALA 25 1026 1026 ALA ALA A . n A 1 26 ASP 26 1027 1027 ASP ASP A . n A 1 27 LYS 27 1028 1028 LYS LYS A . n A 1 28 VAL 28 1029 1029 VAL VAL A . n A 1 29 PRO 29 1030 1030 PRO PRO A . n A 1 30 LYS 30 1031 1031 LYS LYS A . n A 1 31 THR 31 1032 1032 THR THR A . n A 1 32 ALA 32 1033 1033 ALA ALA A . n A 1 33 GLU 33 1034 1034 GLU GLU A . n A 1 34 ASN 34 1035 1035 ASN ASN A . n A 1 35 PHE 35 1036 1036 PHE PHE A . n A 1 36 ARG 36 1037 1037 ARG ARG A . n A 1 37 ALA 37 1038 1038 ALA ALA A . n A 1 38 LEU 38 1039 1039 LEU LEU A . n A 1 39 SER 39 1040 1040 SER SER A . n A 1 40 THR 40 1041 1041 THR THR A . n A 1 41 GLY 41 1042 1042 GLY GLY A . n A 1 42 GLU 42 1043 1043 GLU GLU A . n A 1 43 LYS 43 1044 1044 LYS LYS A . n A 1 44 GLY 44 1045 1045 GLY GLY A . n A 1 45 PHE 45 1046 1046 PHE PHE A . n A 1 46 GLY 46 1047 1047 GLY GLY A . n A 1 47 TYR 47 1048 1048 TYR TYR A . n A 1 48 LYS 48 1049 1049 LYS LYS A . n A 1 49 GLY 49 1050 1050 GLY GLY A . n A 1 50 SER 50 1051 1051 SER SER A . n A 1 51 CYS 51 1052 1052 CYS CYS A . n A 1 52 PHE 52 1053 1053 PHE PHE A . n A 1 53 HIS 53 1054 1054 HIS HIS A . n A 1 54 ARG 54 1055 1055 ARG ARG A . n A 1 55 ILE 55 1056 1056 ILE ILE A . n A 1 56 ILE 56 1057 1057 ILE ILE A . n A 1 57 PRO 57 1058 1058 PRO PRO A . n A 1 58 GLY 58 1059 1059 GLY GLY A . n A 1 59 PHE 59 1060 1060 PHE PHE A . n A 1 60 MET 60 1061 1061 MET MET A . n A 1 61 CYS 61 1062 1062 CYS CYS A . n A 1 62 GLN 62 1063 1063 GLN GLN A . n A 1 63 GLY 63 1064 1064 GLY GLY A . n A 1 64 GLY 64 1065 1065 GLY GLY A . n A 1 65 ASP 65 1066 1066 ASP ASP A . n A 1 66 PHE 66 1067 1067 PHE PHE A . n A 1 67 THR 67 1068 1068 THR THR A . n A 1 68 ARG 68 1069 1069 ARG ARG A . n A 1 69 HIS 69 1070 1070 HIS HIS A . n A 1 70 ASN 70 1071 1071 ASN ASN A . n A 1 71 GLY 71 1072 1072 GLY GLY A . n A 1 72 THR 72 1073 1073 THR THR A . n A 1 73 GLY 73 1074 1074 GLY GLY A . n A 1 74 GLY 74 1075 1075 GLY GLY A . n A 1 75 LYS 75 1076 1076 LYS LYS A . n A 1 76 SER 76 1077 1077 SER SER A . n A 1 77 ILE 77 1078 1078 ILE ILE A . n A 1 78 TYR 78 1079 1079 TYR TYR A . n A 1 79 GLY 79 1080 1080 GLY GLY A . n A 1 80 GLU 80 1081 1081 GLU GLU A . n A 1 81 LYS 81 1082 1082 LYS LYS A . n A 1 82 PHE 82 1083 1083 PHE PHE A . n A 1 83 GLU 83 1084 1084 GLU GLU A . n A 1 84 ASP 84 1085 1085 ASP ASP A . n A 1 85 GLU 85 1086 1086 GLU GLU A . n A 1 86 ASN 86 1087 1087 ASN ASN A . n A 1 87 PHE 87 1088 1088 PHE PHE A . n A 1 88 ILE 88 1089 1089 ILE ILE A . n A 1 89 LEU 89 1090 1090 LEU LEU A . n A 1 90 LYS 90 1091 1091 LYS LYS A . n A 1 91 HIS 91 1092 1092 HIS HIS A . n A 1 92 THR 92 1093 1093 THR THR A . n A 1 93 GLY 93 1094 1094 GLY GLY A . n A 1 94 PRO 94 1095 1095 PRO PRO A . n A 1 95 GLY 95 1096 1096 GLY GLY A . n A 1 96 ILE 96 1097 1097 ILE ILE A . n A 1 97 LEU 97 1098 1098 LEU LEU A . n A 1 98 SER 98 1099 1099 SER SER A . n A 1 99 MET 99 1100 1100 MET MET A . n A 1 100 ALA 100 1101 1101 ALA ALA A . n A 1 101 ASN 101 1102 1102 ASN ASN A . n A 1 102 ALA 102 1103 1103 ALA ALA A . n A 1 103 GLY 103 1104 1104 GLY GLY A . n A 1 104 PRO 104 1105 1105 PRO PRO A . n A 1 105 ASN 105 1106 1106 ASN ASN A . n A 1 106 THR 106 1107 1107 THR THR A . n A 1 107 ASN 107 1108 1108 ASN ASN A . n A 1 108 GLY 108 1109 1109 GLY GLY A . n A 1 109 SER 109 1110 1110 SER SER A . n A 1 110 GLN 110 1111 1111 GLN GLN A . n A 1 111 PHE 111 1112 1112 PHE PHE A . n A 1 112 PHE 112 1113 1113 PHE PHE A . n A 1 113 ILE 113 1114 1114 ILE ILE A . n A 1 114 CYS 114 1115 1115 CYS CYS A . n A 1 115 THR 115 1116 1116 THR THR A . n A 1 116 ALA 116 1117 1117 ALA ALA A . n A 1 117 LYS 117 1118 1118 LYS LYS A . n A 1 118 THR 118 1119 1119 THR THR A . n A 1 119 GLU 119 1120 1120 GLU GLU A . n A 1 120 TRP 120 1121 1121 TRP TRP A . n A 1 121 LEU 121 1122 1122 LEU LEU A . n A 1 122 ASP 122 1123 1123 ASP ASP A . n A 1 123 GLY 123 1124 1124 GLY GLY A . n A 1 124 LYS 124 1125 1125 LYS LYS A . n A 1 125 HIS 125 1126 1126 HIS HIS A . n A 1 126 VAL 126 1127 1127 VAL VAL A . n A 1 127 VAL 127 1128 1128 VAL VAL A . n A 1 128 PHE 128 1129 1129 PHE PHE A . n A 1 129 GLY 129 1130 1130 GLY GLY A . n A 1 130 LYS 130 1131 1131 LYS LYS A . n A 1 131 VAL 131 1132 1132 VAL VAL A . n A 1 132 LYS 132 1133 1133 LYS LYS A . n A 1 133 GLU 133 1134 1134 GLU GLU A . n A 1 134 GLY 134 1135 1135 GLY GLY A . n A 1 135 MET 135 1136 1136 MET MET A . n A 1 136 ASN 136 1137 1137 ASN ASN A . n A 1 137 ILE 137 1138 1138 ILE ILE A . n A 1 138 VAL 138 1139 1139 VAL VAL A . n A 1 139 GLU 139 1140 1140 GLU GLU A . n A 1 140 ALA 140 1141 1141 ALA ALA A . n A 1 141 MET 141 1142 1142 MET MET A . n A 1 142 GLU 142 1143 1143 GLU GLU A . n A 1 143 ARG 143 1144 1144 ARG ARG A . n A 1 144 PHE 144 1145 1145 PHE PHE A . n A 1 145 GLY 145 1146 1146 GLY GLY A . n A 1 146 SER 146 1147 1147 SER SER A . n A 1 147 ARG 147 1148 1148 ARG ARG A . n A 1 148 ASN 148 1149 1149 ASN ASN A . n A 1 149 GLY 149 1150 1150 GLY GLY A . n A 1 150 LYS 150 1151 1151 LYS LYS A . n A 1 151 THR 151 1152 1152 THR THR A . n A 1 152 SER 152 1153 1153 SER SER A . n A 1 153 LYS 153 1154 1154 LYS LYS A . n A 1 154 LYS 154 1155 1155 LYS LYS A . n A 1 155 ILE 155 1156 1156 ILE ILE A . n A 1 156 THR 156 1157 1157 THR THR A . n A 1 157 ILE 157 1158 1158 ILE ILE A . n A 1 158 ALA 158 1159 1159 ALA ALA A . n A 1 159 ASP 159 1160 1160 ASP ASP A . n A 1 160 CYS 160 1161 1161 CYS CYS A . n A 1 161 GLY 161 1162 1162 GLY GLY A . n A 1 162 GLN 162 1163 1163 GLN GLN A . n A 1 163 LEU 163 1164 1164 LEU LEU A . n A 1 164 GLU 164 1165 1165 GLU GLU A . n B 2 1 HIS 1 1 1 HIS HIS B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 GLY 3 3 3 GLY GLY B . n B 2 4 PRO 4 4 4 PRO PRO B . n B 2 5 ILE 5 5 5 ILE ILE B . n B 2 6 ALA 6 6 6 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 201 201 HOH HOH A . C 3 HOH 2 202 202 HOH HOH A . C 3 HOH 3 204 204 HOH HOH A . C 3 HOH 4 205 205 HOH HOH A . C 3 HOH 5 206 206 HOH HOH A . C 3 HOH 6 208 208 HOH HOH A . C 3 HOH 7 209 209 HOH HOH A . C 3 HOH 8 210 210 HOH HOH A . C 3 HOH 9 211 211 HOH HOH A . C 3 HOH 10 212 212 HOH HOH A . C 3 HOH 11 213 213 HOH HOH A . D 3 HOH 1 203 203 HOH HOH B . D 3 HOH 2 207 207 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 850 ? 1 MORE -5 ? 1 'SSA (A^2)' 7510 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-03-18 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' Other 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.843 ? 1 X-PLOR refinement 3.843 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing 3.843 ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 1013 ? ? 69.55 65.75 2 1 GLU A 1015 ? ? -44.94 97.67 3 1 LEU A 1017 ? ? -105.77 -69.54 4 1 ALA A 1026 ? ? -88.74 -76.61 5 1 GLU A 1043 ? ? -62.18 11.75 6 1 LYS A 1044 ? ? -156.53 25.98 7 1 THR A 1068 ? ? -84.84 -71.17 8 1 ASN A 1071 ? ? -161.85 -41.86 9 1 LYS A 1076 ? ? 174.39 143.09 10 1 GLU A 1081 ? ? -143.06 -43.26 11 1 GLU A 1084 ? ? -43.08 164.86 12 1 HIS A 1092 ? ? -69.09 67.43 13 1 THR A 1119 ? ? -113.48 63.26 14 1 ARG A 1144 ? ? -59.59 -0.40 15 1 SER A 1147 ? ? -172.29 -173.25 16 1 LYS A 1154 ? ? -141.27 -109.23 17 1 LYS A 1155 ? ? -167.53 89.79 18 1 ASP A 1160 ? ? 178.43 169.21 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A THR 1032 ? CB ? A THR 31 CB 2 1 Y 0 A THR 1032 ? OG1 ? A THR 31 OG1 3 1 Y 0 A THR 1032 ? CG2 ? A THR 31 CG2 4 1 Y 0 A GLU 1034 ? CB ? A GLU 33 CB 5 1 Y 0 A GLU 1034 ? CG ? A GLU 33 CG 6 1 Y 0 A GLU 1034 ? CD ? A GLU 33 CD 7 1 Y 0 A GLU 1034 ? OE1 ? A GLU 33 OE1 8 1 Y 0 A GLU 1034 ? OE2 ? A GLU 33 OE2 9 1 Y 0 A LYS 1049 ? CG ? A LYS 48 CG 10 1 Y 0 A LYS 1049 ? CD ? A LYS 48 CD 11 1 Y 0 A LYS 1049 ? CE ? A LYS 48 CE 12 1 Y 0 A LYS 1049 ? NZ ? A LYS 48 NZ 13 1 Y 0 A ARG 1069 ? CG ? A ARG 68 CG 14 1 Y 0 A ARG 1069 ? CD ? A ARG 68 CD 15 1 Y 0 A ARG 1069 ? NE ? A ARG 68 NE 16 1 Y 0 A ARG 1069 ? CZ ? A ARG 68 CZ 17 1 Y 0 A ARG 1069 ? NH1 ? A ARG 68 NH1 18 1 Y 0 A ARG 1069 ? NH2 ? A ARG 68 NH2 19 1 Y 0 A LYS 1082 ? CB ? A LYS 81 CB 20 1 Y 0 A LYS 1082 ? CG ? A LYS 81 CG 21 1 Y 0 A LYS 1082 ? CD ? A LYS 81 CD 22 1 Y 0 A LYS 1082 ? CE ? A LYS 81 CE 23 1 Y 0 A LYS 1082 ? NZ ? A LYS 81 NZ 24 1 Y 0 A GLU 1084 ? CB ? A GLU 83 CB 25 1 Y 0 A GLU 1084 ? CG ? A GLU 83 CG 26 1 Y 0 A GLU 1084 ? CD ? A GLU 83 CD 27 1 Y 0 A GLU 1084 ? OE1 ? A GLU 83 OE1 28 1 Y 0 A GLU 1084 ? OE2 ? A GLU 83 OE2 29 1 Y 0 A ASP 1085 ? CB ? A ASP 84 CB 30 1 Y 0 A ASP 1085 ? CG ? A ASP 84 CG 31 1 Y 0 A ASP 1085 ? OD1 ? A ASP 84 OD1 32 1 Y 0 A ASP 1085 ? OD2 ? A ASP 84 OD2 33 1 Y 0 A GLU 1086 ? CB ? A GLU 85 CB 34 1 Y 0 A GLU 1086 ? CG ? A GLU 85 CG 35 1 Y 0 A GLU 1086 ? CD ? A GLU 85 CD 36 1 Y 0 A GLU 1086 ? OE1 ? A GLU 85 OE1 37 1 Y 0 A GLU 1086 ? OE2 ? A GLU 85 OE2 38 1 Y 0 A ASN 1087 ? CB ? A ASN 86 CB 39 1 Y 0 A ASN 1087 ? CG ? A ASN 86 CG 40 1 Y 0 A ASN 1087 ? OD1 ? A ASN 86 OD1 41 1 Y 0 A ASN 1087 ? ND2 ? A ASN 86 ND2 42 1 Y 0 A ASN 1106 ? CG ? A ASN 105 CG 43 1 Y 0 A ASN 1106 ? OD1 ? A ASN 105 OD1 44 1 Y 0 A ASN 1106 ? ND2 ? A ASN 105 ND2 45 1 Y 0 A LYS 1131 ? CG ? A LYS 130 CG 46 1 Y 0 A LYS 1131 ? CD ? A LYS 130 CD 47 1 Y 0 A LYS 1131 ? CE ? A LYS 130 CE 48 1 Y 0 A LYS 1131 ? NZ ? A LYS 130 NZ 49 1 Y 0 A GLU 1134 ? CG ? A GLU 133 CG 50 1 Y 0 A GLU 1134 ? CD ? A GLU 133 CD 51 1 Y 0 A GLU 1134 ? OE1 ? A GLU 133 OE1 52 1 Y 0 A GLU 1134 ? OE2 ? A GLU 133 OE2 53 1 Y 0 A ASN 1137 ? CG ? A ASN 136 CG 54 1 Y 0 A ASN 1137 ? OD1 ? A ASN 136 OD1 55 1 Y 0 A ASN 1137 ? ND2 ? A ASN 136 ND2 56 1 Y 0 A ARG 1148 ? CB ? A ARG 147 CB 57 1 Y 0 A ARG 1148 ? CG ? A ARG 147 CG 58 1 Y 0 A ARG 1148 ? CD ? A ARG 147 CD 59 1 Y 0 A ARG 1148 ? NE ? A ARG 147 NE 60 1 Y 0 A ARG 1148 ? CZ ? A ARG 147 CZ 61 1 Y 0 A ARG 1148 ? NH1 ? A ARG 147 NH1 62 1 Y 0 A ARG 1148 ? NH2 ? A ARG 147 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 0 A VAL 1002 ? A VAL 1 2 1 Y 0 A ASN 1003 ? A ASN 2 3 1 Y 0 A ALA 1026 ? A ALA 25 4 1 Y 0 A ASP 1027 ? A ASP 26 5 1 Y 0 A LYS 1028 ? A LYS 27 6 1 Y 0 A VAL 1029 ? A VAL 28 7 1 Y 0 A PRO 1030 ? A PRO 29 8 1 Y 0 A LYS 1031 ? A LYS 30 9 1 Y 0 A GLY 1042 ? A GLY 41 10 1 Y 0 A GLY 1080 ? A GLY 79 11 1 Y 0 A GLU 1081 ? A GLU 80 12 1 Y 0 A GLY 1104 ? A GLY 103 13 1 Y 0 A PRO 1105 ? A PRO 104 14 1 Y 0 A ARG 1144 ? A ARG 143 15 1 Y 0 A LYS 1154 ? A LYS 153 16 1 Y 0 A LYS 1155 ? A LYS 154 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2CYH _pdbx_initial_refinement_model.details 'PDB ENTRY 2CYH' #