data_1AXL # _entry.id 1AXL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AXL pdb_00001axl 10.2210/pdb1axl/pdb WWPDB D_1000171379 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-01 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AXL _pdbx_database_status.recvd_initial_deposition_date 1997-10-16 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Feng, B.' 1 'Gorin, A.A.' 2 'Kolbanovskiy, A.' 3 'Hingerty, B.E.' 4 'Geacintov, N.E.' 5 'Broyde, S.' 6 'Patel, D.J.' 7 # _citation.id primary _citation.title ;Solution conformation of the (-)-trans-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the minor groove. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 36 _citation.page_first 13780 _citation.page_last 13790 _citation.year 1997 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9374854 _citation.pdbx_database_id_DOI 10.1021/bi970070r # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feng, B.' 1 ? primary 'Gorin, A.' 2 ? primary 'Kolbanovskiy, A.' 3 ? primary 'Hingerty, B.E.' 4 ? primary 'Geacintov, N.E.' 5 ? primary 'Broyde, S.' 6 ? primary 'Patel, D.J.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG)' 3254.138 1 ? ? ? ;D(C1-C2-A3-T4-C5-[BP]G6-C7-T8-A9-C10-C11) D (G11-G12-T13-A14-G15--G16-A17-T18-G19-G20) WITH CC10 ATOM OF BP LINKED TO N2 ATOM OF DG6 ; 2 polymer syn 'DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG)' 3165.076 1 ? ? ? ;D(C1-C2-A3-T4-C5-[BP]G6-C7-T8-A9-C10-C11) D (G11-G12-T13-A14-G15--G16-A17-T18-G19-G20) WITH CC10 ATOM OF BP LINKED TO N2 ATOM OF DG6 ; 3 non-polymer syn '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' 304.339 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DT)(DC)(DG)(DC)(DT)(DA)(DC)(DC)' CCATCGCTACC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DA)(DG)(DG)(DA)(DT)(DG)(DG)' GGTAGGATGG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' _pdbx_entity_nonpoly.comp_id BAP # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DT n 1 9 DA n 1 10 DC n 1 11 DC n 2 1 DG n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DG n 2 7 DA n 2 8 DT n 2 9 DG n 2 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BAP non-polymer . '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' ? 'C20 H16 O3' 304.339 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DC 11 11 11 DC C A . n B 2 1 DG 1 12 12 DG G B . n B 2 2 DG 2 13 13 DG G B . n B 2 3 DT 3 14 14 DT T B . n B 2 4 DA 4 15 15 DA A B . n B 2 5 DG 5 16 16 DG G B . n B 2 6 DG 6 17 17 DG G B . n B 2 7 DA 7 18 18 DA A B . n B 2 8 DT 8 19 19 DT T B . n B 2 9 DG 9 20 20 DG G B . n B 2 10 DG 10 21 21 DG G B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id BAP _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 22 _pdbx_nonpoly_scheme.auth_seq_num 22 _pdbx_nonpoly_scheme.pdb_mon_id BAP _pdbx_nonpoly_scheme.auth_mon_id BP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # _cell.entry_id 1AXL _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AXL _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AXL _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1AXL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AXL _struct.title ;SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AXL _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DEOXYRIBONUCLEIC ACID, DNA, BENZO[A]PYRENE, CARCINOGEN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1AXL 1AXL ? ? ? 2 2 PDB 1AXL 1AXL ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AXL A 1 ? 11 ? 1AXL 1 ? 11 ? 1 11 2 2 1AXL B 1 ? 10 ? 1AXL 12 ? 21 ? 12 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 6 N2 ? ? ? 1_555 C BAP . "C4'" ? ? A DG 6 A BAP 22 1_555 ? ? ? ? ? ? ? 1.479 ? ? hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 5 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 5 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 5 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BAP _struct_site.pdbx_auth_seq_id 22 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE BAP A 22' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DC A 5 ? DC A 5 . ? 1_555 ? 2 AC1 5 DG A 6 ? DG A 6 . ? 1_555 ? 3 AC1 5 DC A 7 ? DC A 7 . ? 1_555 ? 4 AC1 5 DG B 5 ? DG B 16 . ? 1_555 ? 5 AC1 5 DG B 6 ? DG B 17 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N2 A DG 6 ? ? C6 A BAP 22 ? ? 2.16 2 2 H1 A DG 6 ? ? OP1 B DT 19 ? ? 1.58 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DT 4 ? ? "O5'" A DT 4 ? ? 1.656 1.593 0.063 0.010 N 2 1 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.577 1.512 0.065 0.007 N 3 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.539 1.496 0.043 0.006 N 4 1 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.537 1.496 0.041 0.006 N 5 1 C5 B DT 14 ? ? C7 B DT 14 ? ? 1.533 1.496 0.037 0.006 N 6 1 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? 1.565 1.512 0.053 0.007 N 7 1 C5 B DT 19 ? ? C7 B DT 19 ? ? 1.535 1.496 0.039 0.006 N 8 2 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.533 1.496 0.037 0.006 N 9 2 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.537 1.496 0.041 0.006 N 10 2 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? 1.559 1.512 0.047 0.007 N 11 2 C5 B DT 19 ? ? C7 B DT 19 ? ? 1.533 1.496 0.037 0.006 N 12 3 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.565 1.512 0.053 0.007 N 13 3 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.538 1.496 0.042 0.006 N 14 3 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.534 1.496 0.038 0.006 N 15 3 C5 B DT 14 ? ? C7 B DT 14 ? ? 1.543 1.496 0.047 0.006 N 16 3 C5 B DT 19 ? ? C7 B DT 19 ? ? 1.534 1.496 0.038 0.006 N 17 4 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.539 1.496 0.043 0.006 N 18 4 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.535 1.496 0.039 0.006 N 19 4 "C5'" A DA 9 ? ? "C4'" A DA 9 ? ? 1.559 1.512 0.047 0.007 N 20 4 C5 B DT 14 ? ? C7 B DT 14 ? ? 1.547 1.496 0.051 0.006 N 21 5 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.545 1.496 0.049 0.006 N 22 5 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.536 1.496 0.040 0.006 N 23 5 C5 B DT 14 ? ? C7 B DT 14 ? ? 1.543 1.496 0.047 0.006 N 24 5 C5 B DT 19 ? ? C7 B DT 19 ? ? 1.535 1.496 0.039 0.006 N 25 6 C5 B DT 14 ? ? C7 B DT 14 ? ? 1.549 1.496 0.053 0.006 N 26 6 C5 B DT 19 ? ? C7 B DT 19 ? ? 1.537 1.496 0.041 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 96.51 102.40 -5.89 0.80 N 2 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.50 118.60 -4.10 0.60 N 3 1 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 123.63 115.70 7.93 1.20 N 4 1 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 97.60 102.40 -4.80 0.80 N 5 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.94 108.30 2.64 0.30 N 6 1 N1 A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 123.73 114.30 9.43 1.40 N 7 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 123.09 118.90 4.19 0.60 N 8 1 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 97.09 104.50 -7.41 0.40 N 9 1 "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? 109.24 103.10 6.14 0.90 N 10 1 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 93.65 102.40 -8.75 0.80 N 11 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 117.10 108.30 8.80 0.30 N 12 1 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 123.11 118.90 4.21 0.60 N 13 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.89 105.90 -5.01 0.80 N 14 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.40 108.30 3.10 0.30 N 15 1 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.02 102.20 -5.18 0.70 N 16 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 114.65 108.30 6.35 0.30 N 17 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 99.39 105.90 -6.51 0.80 N 18 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.43 108.30 2.13 0.30 N 19 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 97.52 108.00 -10.48 0.70 N 20 1 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 98.07 104.50 -6.43 0.40 N 21 1 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? 124.76 112.30 12.46 2.00 N 22 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.35 108.30 3.05 0.30 N 23 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DG 17 ? ? 127.08 119.70 7.38 1.20 Y 24 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 116.36 108.30 8.06 0.30 N 25 1 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? 123.37 115.70 7.67 1.20 N 26 1 "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 97.93 102.20 -4.27 0.70 N 27 1 "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? "C1'" B DA 18 ? ? 97.60 102.40 -4.80 0.80 N 28 1 "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 94.31 102.40 -8.09 0.80 N 29 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 100.54 108.00 -7.46 0.70 N 30 1 N3 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 116.04 119.90 -3.86 0.60 N 31 1 C5 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 130.79 124.90 5.89 0.70 N 32 1 "C4'" B DG 20 ? ? "C3'" B DG 20 ? ? "C2'" B DG 20 ? ? 96.85 102.20 -5.35 0.70 N 33 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 102.22 108.00 -5.78 0.70 N 34 2 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 97.19 102.40 -5.21 0.80 N 35 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 102.28 108.00 -5.72 0.70 N 36 2 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.53 108.30 3.23 0.30 N 37 2 C6 A DA 3 ? ? N1 A DA 3 ? ? C2 A DA 3 ? ? 122.43 118.60 3.83 0.60 N 38 2 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 97.25 102.40 -5.15 0.80 N 39 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.52 105.90 -5.38 0.80 N 40 2 N1 A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 123.87 114.30 9.57 1.40 N 41 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.77 108.30 3.47 0.30 N 42 2 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 101.11 104.50 -3.39 0.40 N 43 2 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 96.17 102.40 -6.23 0.80 N 44 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 109.86 106.80 3.06 0.50 N 45 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 115.00 108.30 6.70 0.30 N 46 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.49 108.30 2.19 0.30 N 47 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.10 122.90 -3.80 0.60 N 48 2 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.55 108.30 2.25 0.30 N 49 2 "C3'" B DA 15 ? ? "O3'" B DA 15 ? ? P B DG 16 ? ? 131.56 119.70 11.86 1.20 Y 50 2 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 98.68 105.90 -7.22 0.80 N 51 2 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 113.45 108.30 5.15 0.30 N 52 2 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 117.40 108.30 9.10 0.30 N 53 2 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? 126.54 115.70 10.84 1.20 N 54 2 "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? "C1'" B DA 18 ? ? 96.99 102.40 -5.41 0.80 N 55 2 N9 B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 124.25 114.30 9.95 1.40 N 56 2 "C3'" B DA 18 ? ? "O3'" B DA 18 ? ? P B DT 19 ? ? 131.51 119.70 11.81 1.20 Y 57 2 "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 92.16 102.40 -10.24 0.80 N 58 2 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 102.72 108.00 -5.28 0.70 N 59 2 N3 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 116.13 119.90 -3.77 0.60 N 60 2 C5 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 131.01 124.90 6.11 0.70 N 61 3 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 123.65 118.90 4.75 0.60 N 62 3 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.64 105.90 -5.26 0.80 N 63 3 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.44 108.30 3.14 0.30 N 64 3 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 125.30 115.70 9.60 1.20 N 65 3 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 101.51 104.50 -2.99 0.40 N 66 3 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 97.11 102.20 -5.09 0.70 N 67 3 N1 A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 122.97 114.30 8.67 1.40 N 68 3 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DC 7 ? ? 127.38 119.70 7.68 1.20 Y 69 3 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 96.33 102.40 -6.07 0.80 N 70 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 110.27 106.80 3.47 0.50 N 71 3 N1 A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 123.08 114.30 8.78 1.40 N 72 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 113.96 108.30 5.66 0.30 N 73 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.11 108.30 3.81 0.30 N 74 3 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 123.13 118.90 4.23 0.60 N 75 3 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 99.93 105.90 -5.97 0.80 N 76 3 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? "C2'" B DA 15 ? ? 100.33 105.90 -5.57 0.80 N 77 3 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 100.64 104.50 -3.86 0.40 N 78 3 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? 97.27 102.20 -4.93 0.70 N 79 3 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 113.53 108.30 5.23 0.30 N 80 3 P B DG 17 ? ? "O5'" B DG 17 ? ? "C5'" B DG 17 ? ? 133.28 120.90 12.38 1.60 N 81 3 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? "C2'" B DG 17 ? ? 100.30 105.90 -5.60 0.80 N 82 3 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 111.48 108.30 3.18 0.30 N 83 3 "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 95.78 102.40 -6.62 0.80 N 84 3 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 103.76 108.00 -4.24 0.70 N 85 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 100.83 105.90 -5.07 0.80 N 86 4 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 102.39 108.00 -5.61 0.70 N 87 4 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 101.32 104.50 -3.18 0.40 N 88 4 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 95.23 102.40 -7.17 0.80 N 89 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.40 105.90 -5.50 0.80 N 90 4 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 124.18 119.90 4.28 0.70 N 91 4 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 116.18 108.30 7.88 0.30 N 92 4 "C5'" A DA 9 ? ? "C4'" A DA 9 ? ? "C3'" A DA 9 ? ? 125.45 115.70 9.75 1.20 N 93 4 "C4'" A DA 9 ? ? "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? 97.05 102.20 -5.15 0.70 N 94 4 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.38 108.30 2.08 0.30 N 95 4 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 101.97 108.00 -6.03 0.70 N 96 4 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 100.98 108.00 -7.02 0.70 N 97 4 "C3'" B DA 15 ? ? "O3'" B DA 15 ? ? P B DG 16 ? ? 129.60 119.70 9.90 1.20 Y 98 4 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 98.18 105.90 -7.72 0.80 N 99 4 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.81 108.30 2.51 0.30 N 100 4 "C5'" B DG 17 ? ? "C4'" B DG 17 ? ? "O4'" B DG 17 ? ? 116.53 109.80 6.73 1.10 N 101 4 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? "C2'" B DG 17 ? ? 99.13 105.90 -6.77 0.80 N 102 4 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 110.79 108.30 2.49 0.30 N 103 4 "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 94.30 102.40 -8.10 0.80 N 104 4 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 99.73 105.90 -6.17 0.80 N 105 5 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 96.90 102.40 -5.50 0.80 N 106 5 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 103.29 108.00 -4.71 0.70 N 107 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 100.41 105.90 -5.49 0.80 N 108 5 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 98.68 104.50 -5.82 0.40 N 109 5 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 101.24 104.50 -3.26 0.40 N 110 5 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 97.11 102.40 -5.29 0.80 N 111 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 116.29 108.30 7.99 0.30 N 112 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 97.79 105.90 -8.11 0.80 N 113 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 114.42 108.30 6.12 0.30 N 114 5 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.89 118.90 3.99 0.60 N 115 5 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 101.26 108.00 -6.74 0.70 N 116 5 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 100.20 104.50 -4.30 0.40 N 117 5 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? 95.85 102.20 -6.35 0.70 N 118 5 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 114.79 108.30 6.49 0.30 N 119 5 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DG 17 ? ? 128.09 119.70 8.39 1.20 Y 120 5 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 117.83 108.30 9.53 0.30 N 121 5 "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 97.84 102.20 -4.36 0.70 N 122 5 "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? 102.08 104.50 -2.42 0.40 N 123 5 "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 94.49 102.40 -7.91 0.80 N 124 5 "C4'" B DG 20 ? ? "C3'" B DG 20 ? ? "C2'" B DG 20 ? ? 96.73 102.20 -5.47 0.70 N 125 5 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 100.69 108.00 -7.31 0.70 N 126 6 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 99.87 108.00 -8.13 0.70 N 127 6 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 97.28 102.40 -5.12 0.80 N 128 6 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DC 5 ? ? 128.15 119.70 8.45 1.20 Y 129 6 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 98.69 104.50 -5.81 0.40 N 130 6 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 96.83 102.20 -5.37 0.70 N 131 6 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 115.21 108.30 6.91 0.30 N 132 6 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.67 118.90 3.77 0.60 N 133 6 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 113.23 108.30 4.93 0.30 N 134 6 "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 97.56 102.40 -4.84 0.80 N 135 6 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 113.78 108.30 5.48 0.30 N 136 6 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.14 108.30 2.84 0.30 N 137 6 "C3'" B DA 15 ? ? "O3'" B DA 15 ? ? P B DG 16 ? ? 129.69 119.70 9.99 1.20 Y 138 6 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 98.66 104.50 -5.84 0.40 N 139 6 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? 124.65 112.30 12.35 2.00 N 140 6 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 112.49 108.30 4.19 0.30 N 141 6 "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 93.27 102.40 -9.13 0.80 N 142 6 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 102.65 108.00 -5.35 0.70 N 143 6 C5 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 129.11 124.90 4.21 0.70 N 144 6 "C4'" B DG 20 ? ? "C3'" B DG 20 ? ? "C2'" B DG 20 ? ? 96.66 102.20 -5.54 0.70 N 145 6 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 100.50 108.00 -7.50 0.70 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C1'" ? A BAP 22 ? 'WRONG HAND' . 2 1 "C2'" ? A BAP 22 ? 'WRONG HAND' . 3 1 "C3'" ? A BAP 22 ? 'WRONG HAND' . 4 2 "C1'" ? A BAP 22 ? 'WRONG HAND' . 5 2 "C2'" ? A BAP 22 ? 'WRONG HAND' . 6 2 "C3'" ? A BAP 22 ? 'WRONG HAND' . 7 3 "C1'" ? A BAP 22 ? 'WRONG HAND' . 8 3 "C2'" ? A BAP 22 ? 'WRONG HAND' . 9 3 "C3'" ? A BAP 22 ? 'WRONG HAND' . 10 4 "C1'" ? A BAP 22 ? 'WRONG HAND' . 11 4 "C2'" ? A BAP 22 ? 'WRONG HAND' . 12 4 "C3'" ? A BAP 22 ? 'WRONG HAND' . 13 5 "C1'" ? A BAP 22 ? 'WRONG HAND' . 14 5 "C2'" ? A BAP 22 ? 'WRONG HAND' . 15 5 "C3'" ? A BAP 22 ? 'WRONG HAND' . 16 6 "C1'" ? A BAP 22 ? 'WRONG HAND' . 17 6 "C2'" ? A BAP 22 ? 'WRONG HAND' . 18 6 "C3'" ? A BAP 22 ? 'WRONG HAND' . # _pdbx_nmr_ensemble.entry_id 1AXL _pdbx_nmr_ensemble.conformers_calculated_total_number 6 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'ALL CONFORMERS WERE INCLUDED' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 317 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 4 1 DQF-COSY 1 # _pdbx_nmr_refine.entry_id 1AXL _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' VNMR ? ? 2 'structure solution' DUPLEX ? ? 3 'structure solution' X-PLOR ? ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BAP C1 C Y N 1 BAP C2 C Y N 2 BAP C3 C Y N 3 BAP C3A C Y N 4 BAP C4 C Y N 5 BAP C5 C Y N 6 BAP C5A C Y N 7 BAP C6 C Y N 8 BAP C7 C Y N 9 BAP C8 C Y N 10 BAP C8A C Y N 11 BAP C9 C Y N 12 BAP C10 C Y N 13 BAP C1A C Y N 14 BAP C3B C Y N 15 BAP C5B C Y N 16 BAP "C1'" C N R 17 BAP "O1'" O N N 18 BAP "C2'" C N R 19 BAP "O2'" O N N 20 BAP "C3'" C N R 21 BAP "O3'" O N N 22 BAP "C4'" C N N 23 BAP H1 H N N 24 BAP H2 H N N 25 BAP H3 H N N 26 BAP H4 H N N 27 BAP H5 H N N 28 BAP H8 H N N 29 BAP H9 H N N 30 BAP H10 H N N 31 BAP "H1'" H N N 32 BAP HO1 H N N 33 BAP "H2'" H N N 34 BAP HO2 H N N 35 BAP "H3'" H N N 36 BAP HO3 H N N 37 BAP "H4'1" H N N 38 BAP "H4'2" H N N 39 DA OP3 O N N 40 DA P P N N 41 DA OP1 O N N 42 DA OP2 O N N 43 DA "O5'" O N N 44 DA "C5'" C N N 45 DA "C4'" C N R 46 DA "O4'" O N N 47 DA "C3'" C N S 48 DA "O3'" O N N 49 DA "C2'" C N N 50 DA "C1'" C N R 51 DA N9 N Y N 52 DA C8 C Y N 53 DA N7 N Y N 54 DA C5 C Y N 55 DA C6 C Y N 56 DA N6 N N N 57 DA N1 N Y N 58 DA C2 C Y N 59 DA N3 N Y N 60 DA C4 C Y N 61 DA HOP3 H N N 62 DA HOP2 H N N 63 DA "H5'" H N N 64 DA "H5''" H N N 65 DA "H4'" H N N 66 DA "H3'" H N N 67 DA "HO3'" H N N 68 DA "H2'" H N N 69 DA "H2''" H N N 70 DA "H1'" H N N 71 DA H8 H N N 72 DA H61 H N N 73 DA H62 H N N 74 DA H2 H N N 75 DC OP3 O N N 76 DC P P N N 77 DC OP1 O N N 78 DC OP2 O N N 79 DC "O5'" O N N 80 DC "C5'" C N N 81 DC "C4'" C N R 82 DC "O4'" O N N 83 DC "C3'" C N S 84 DC "O3'" O N N 85 DC "C2'" C N N 86 DC "C1'" C N R 87 DC N1 N N N 88 DC C2 C N N 89 DC O2 O N N 90 DC N3 N N N 91 DC C4 C N N 92 DC N4 N N N 93 DC C5 C N N 94 DC C6 C N N 95 DC HOP3 H N N 96 DC HOP2 H N N 97 DC "H5'" H N N 98 DC "H5''" H N N 99 DC "H4'" H N N 100 DC "H3'" H N N 101 DC "HO3'" H N N 102 DC "H2'" H N N 103 DC "H2''" H N N 104 DC "H1'" H N N 105 DC H41 H N N 106 DC H42 H N N 107 DC H5 H N N 108 DC H6 H N N 109 DG OP3 O N N 110 DG P P N N 111 DG OP1 O N N 112 DG OP2 O N N 113 DG "O5'" O N N 114 DG "C5'" C N N 115 DG "C4'" C N R 116 DG "O4'" O N N 117 DG "C3'" C N S 118 DG "O3'" O N N 119 DG "C2'" C N N 120 DG "C1'" C N R 121 DG N9 N Y N 122 DG C8 C Y N 123 DG N7 N Y N 124 DG C5 C Y N 125 DG C6 C N N 126 DG O6 O N N 127 DG N1 N N N 128 DG C2 C N N 129 DG N2 N N N 130 DG N3 N N N 131 DG C4 C Y N 132 DG HOP3 H N N 133 DG HOP2 H N N 134 DG "H5'" H N N 135 DG "H5''" H N N 136 DG "H4'" H N N 137 DG "H3'" H N N 138 DG "HO3'" H N N 139 DG "H2'" H N N 140 DG "H2''" H N N 141 DG "H1'" H N N 142 DG H8 H N N 143 DG H1 H N N 144 DG H21 H N N 145 DG H22 H N N 146 DT OP3 O N N 147 DT P P N N 148 DT OP1 O N N 149 DT OP2 O N N 150 DT "O5'" O N N 151 DT "C5'" C N N 152 DT "C4'" C N R 153 DT "O4'" O N N 154 DT "C3'" C N S 155 DT "O3'" O N N 156 DT "C2'" C N N 157 DT "C1'" C N R 158 DT N1 N N N 159 DT C2 C N N 160 DT O2 O N N 161 DT N3 N N N 162 DT C4 C N N 163 DT O4 O N N 164 DT C5 C N N 165 DT C7 C N N 166 DT C6 C N N 167 DT HOP3 H N N 168 DT HOP2 H N N 169 DT "H5'" H N N 170 DT "H5''" H N N 171 DT "H4'" H N N 172 DT "H3'" H N N 173 DT "HO3'" H N N 174 DT "H2'" H N N 175 DT "H2''" H N N 176 DT "H1'" H N N 177 DT H3 H N N 178 DT H71 H N N 179 DT H72 H N N 180 DT H73 H N N 181 DT H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BAP C1 C2 doub Y N 1 BAP C1 C1A sing Y N 2 BAP C1 H1 sing N N 3 BAP C2 C3 sing Y N 4 BAP C2 H2 sing N N 5 BAP C3 C3A doub Y N 6 BAP C3 H3 sing N N 7 BAP C3A C4 sing Y N 8 BAP C3A C3B sing Y N 9 BAP C4 C5 doub Y N 10 BAP C4 H4 sing N N 11 BAP C5 C5A sing Y N 12 BAP C5 H5 sing N N 13 BAP C5A C6 doub Y N 14 BAP C5A C5B sing Y N 15 BAP C6 C7 sing Y N 16 BAP C6 "C4'" sing N N 17 BAP C7 C8 doub Y N 18 BAP C7 "C1'" sing N N 19 BAP C8 C8A sing Y N 20 BAP C8 H8 sing N N 21 BAP C8A C9 doub Y N 22 BAP C8A C5B sing Y N 23 BAP C9 C10 sing Y N 24 BAP C9 H9 sing N N 25 BAP C10 C1A doub Y N 26 BAP C10 H10 sing N N 27 BAP C1A C3B sing Y N 28 BAP C3B C5B doub Y N 29 BAP "C1'" "O1'" sing N N 30 BAP "C1'" "C2'" sing N N 31 BAP "C1'" "H1'" sing N N 32 BAP "O1'" HO1 sing N N 33 BAP "C2'" "O2'" sing N N 34 BAP "C2'" "C3'" sing N N 35 BAP "C2'" "H2'" sing N N 36 BAP "O2'" HO2 sing N N 37 BAP "C3'" "O3'" sing N N 38 BAP "C3'" "C4'" sing N N 39 BAP "C3'" "H3'" sing N N 40 BAP "O3'" HO3 sing N N 41 BAP "C4'" "H4'1" sing N N 42 BAP "C4'" "H4'2" sing N N 43 DA OP3 P sing N N 44 DA OP3 HOP3 sing N N 45 DA P OP1 doub N N 46 DA P OP2 sing N N 47 DA P "O5'" sing N N 48 DA OP2 HOP2 sing N N 49 DA "O5'" "C5'" sing N N 50 DA "C5'" "C4'" sing N N 51 DA "C5'" "H5'" sing N N 52 DA "C5'" "H5''" sing N N 53 DA "C4'" "O4'" sing N N 54 DA "C4'" "C3'" sing N N 55 DA "C4'" "H4'" sing N N 56 DA "O4'" "C1'" sing N N 57 DA "C3'" "O3'" sing N N 58 DA "C3'" "C2'" sing N N 59 DA "C3'" "H3'" sing N N 60 DA "O3'" "HO3'" sing N N 61 DA "C2'" "C1'" sing N N 62 DA "C2'" "H2'" sing N N 63 DA "C2'" "H2''" sing N N 64 DA "C1'" N9 sing N N 65 DA "C1'" "H1'" sing N N 66 DA N9 C8 sing Y N 67 DA N9 C4 sing Y N 68 DA C8 N7 doub Y N 69 DA C8 H8 sing N N 70 DA N7 C5 sing Y N 71 DA C5 C6 sing Y N 72 DA C5 C4 doub Y N 73 DA C6 N6 sing N N 74 DA C6 N1 doub Y N 75 DA N6 H61 sing N N 76 DA N6 H62 sing N N 77 DA N1 C2 sing Y N 78 DA C2 N3 doub Y N 79 DA C2 H2 sing N N 80 DA N3 C4 sing Y N 81 DC OP3 P sing N N 82 DC OP3 HOP3 sing N N 83 DC P OP1 doub N N 84 DC P OP2 sing N N 85 DC P "O5'" sing N N 86 DC OP2 HOP2 sing N N 87 DC "O5'" "C5'" sing N N 88 DC "C5'" "C4'" sing N N 89 DC "C5'" "H5'" sing N N 90 DC "C5'" "H5''" sing N N 91 DC "C4'" "O4'" sing N N 92 DC "C4'" "C3'" sing N N 93 DC "C4'" "H4'" sing N N 94 DC "O4'" "C1'" sing N N 95 DC "C3'" "O3'" sing N N 96 DC "C3'" "C2'" sing N N 97 DC "C3'" "H3'" sing N N 98 DC "O3'" "HO3'" sing N N 99 DC "C2'" "C1'" sing N N 100 DC "C2'" "H2'" sing N N 101 DC "C2'" "H2''" sing N N 102 DC "C1'" N1 sing N N 103 DC "C1'" "H1'" sing N N 104 DC N1 C2 sing N N 105 DC N1 C6 sing N N 106 DC C2 O2 doub N N 107 DC C2 N3 sing N N 108 DC N3 C4 doub N N 109 DC C4 N4 sing N N 110 DC C4 C5 sing N N 111 DC N4 H41 sing N N 112 DC N4 H42 sing N N 113 DC C5 C6 doub N N 114 DC C5 H5 sing N N 115 DC C6 H6 sing N N 116 DG OP3 P sing N N 117 DG OP3 HOP3 sing N N 118 DG P OP1 doub N N 119 DG P OP2 sing N N 120 DG P "O5'" sing N N 121 DG OP2 HOP2 sing N N 122 DG "O5'" "C5'" sing N N 123 DG "C5'" "C4'" sing N N 124 DG "C5'" "H5'" sing N N 125 DG "C5'" "H5''" sing N N 126 DG "C4'" "O4'" sing N N 127 DG "C4'" "C3'" sing N N 128 DG "C4'" "H4'" sing N N 129 DG "O4'" "C1'" sing N N 130 DG "C3'" "O3'" sing N N 131 DG "C3'" "C2'" sing N N 132 DG "C3'" "H3'" sing N N 133 DG "O3'" "HO3'" sing N N 134 DG "C2'" "C1'" sing N N 135 DG "C2'" "H2'" sing N N 136 DG "C2'" "H2''" sing N N 137 DG "C1'" N9 sing N N 138 DG "C1'" "H1'" sing N N 139 DG N9 C8 sing Y N 140 DG N9 C4 sing Y N 141 DG C8 N7 doub Y N 142 DG C8 H8 sing N N 143 DG N7 C5 sing Y N 144 DG C5 C6 sing N N 145 DG C5 C4 doub Y N 146 DG C6 O6 doub N N 147 DG C6 N1 sing N N 148 DG N1 C2 sing N N 149 DG N1 H1 sing N N 150 DG C2 N2 sing N N 151 DG C2 N3 doub N N 152 DG N2 H21 sing N N 153 DG N2 H22 sing N N 154 DG N3 C4 sing N N 155 DT OP3 P sing N N 156 DT OP3 HOP3 sing N N 157 DT P OP1 doub N N 158 DT P OP2 sing N N 159 DT P "O5'" sing N N 160 DT OP2 HOP2 sing N N 161 DT "O5'" "C5'" sing N N 162 DT "C5'" "C4'" sing N N 163 DT "C5'" "H5'" sing N N 164 DT "C5'" "H5''" sing N N 165 DT "C4'" "O4'" sing N N 166 DT "C4'" "C3'" sing N N 167 DT "C4'" "H4'" sing N N 168 DT "O4'" "C1'" sing N N 169 DT "C3'" "O3'" sing N N 170 DT "C3'" "C2'" sing N N 171 DT "C3'" "H3'" sing N N 172 DT "O3'" "HO3'" sing N N 173 DT "C2'" "C1'" sing N N 174 DT "C2'" "H2'" sing N N 175 DT "C2'" "H2''" sing N N 176 DT "C1'" N1 sing N N 177 DT "C1'" "H1'" sing N N 178 DT N1 C2 sing N N 179 DT N1 C6 sing N N 180 DT C2 O2 doub N N 181 DT C2 N3 sing N N 182 DT N3 C4 sing N N 183 DT N3 H3 sing N N 184 DT C4 O4 doub N N 185 DT C4 C5 sing N N 186 DT C5 C7 sing N N 187 DT C5 C6 doub N N 188 DT C7 H71 sing N N 189 DT C7 H72 sing N N 190 DT C7 H73 sing N N 191 DT C6 H6 sing N N 192 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AXL 'double helix' 1AXL 'b-form double helix' 1AXL 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 1.102 -0.338 0.551 -18.365 -2.736 1.303 1 A_DC1:DG21_B A 1 ? B 21 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.935 -0.325 0.439 -11.235 1.658 1.559 2 A_DC2:DG20_B A 2 ? B 20 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 -0.163 -0.051 0.316 13.780 -4.399 15.013 3 A_DA3:DT19_B A 3 ? B 19 ? 20 1 1 A DT 4 1_555 B DA 7 1_555 -0.099 -0.158 -0.437 18.679 -21.291 2.131 4 A_DT4:DA18_B A 4 ? B 18 ? 20 1 1 A DC 5 1_555 B DG 6 1_555 1.146 -0.482 -0.097 20.415 -10.512 -5.466 5 A_DC5:DG17_B A 5 ? B 17 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 0.104 -0.058 0.707 -26.299 12.797 -2.219 6 A_DC7:DG16_B A 7 ? B 16 ? 19 1 1 A DT 8 1_555 B DA 4 1_555 -0.634 -0.230 0.470 -2.025 2.136 2.136 7 A_DT8:DA15_B A 8 ? B 15 ? 20 1 1 A DA 9 1_555 B DT 3 1_555 0.867 -0.250 0.193 7.016 -31.488 -3.790 8 A_DA9:DT14_B A 9 ? B 14 ? 20 1 1 A DC 10 1_555 B DG 2 1_555 1.012 -0.441 0.180 -15.623 -20.167 2.163 9 A_DC10:DG13_B A 10 ? B 13 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 1.356 -0.453 0.438 -24.160 11.769 1.254 10 A_DC11:DG12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.495 0.666 2.975 6.440 3.668 41.156 0.576 -0.065 3.061 5.168 -9.072 41.789 1 AA_DC1DC2:DG20DG21_BB A 1 ? B 21 ? A 2 ? B 20 ? 1 A DC 2 1_555 B DG 9 1_555 A DA 3 1_555 B DT 8 1_555 1.588 0.721 2.724 4.129 -11.641 36.413 2.299 -1.989 2.543 -18.004 -6.385 38.384 2 AA_DC2DA3:DT19DG20_BB A 2 ? B 20 ? A 3 ? B 19 ? 1 A DA 3 1_555 B DT 8 1_555 A DT 4 1_555 B DA 7 1_555 -0.638 -0.465 2.870 4.351 -4.549 39.586 -0.223 1.366 2.821 -6.665 -6.376 40.063 3 AA_DA3DT4:DA18DT19_BB A 3 ? B 19 ? A 4 ? B 18 ? 1 A DT 4 1_555 B DA 7 1_555 A DC 5 1_555 B DG 6 1_555 -0.751 0.121 3.282 -0.166 9.347 51.420 -0.487 0.842 3.258 10.672 0.189 52.206 4 AA_DT4DC5:DG17DA18_BB A 4 ? B 18 ? A 5 ? B 17 ? 1 A DC 5 1_555 B DG 6 1_555 A DC 7 1_555 B DG 5 1_555 -0.792 0.037 7.303 8.316 16.174 27.213 -6.169 4.616 5.934 30.441 -15.652 32.635 5 AA_DC5DC7:DG16DG17_BB A 5 ? B 17 ? A 7 ? B 16 ? 1 A DC 7 1_555 B DG 5 1_555 A DT 8 1_555 B DA 4 1_555 0.231 -0.019 2.758 3.387 4.454 24.720 -1.136 0.305 2.720 10.236 -7.785 25.336 6 AA_DC7DT8:DA15DG16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DT 8 1_555 B DA 4 1_555 A DA 9 1_555 B DT 3 1_555 -0.607 0.939 3.067 3.355 -10.253 49.045 1.777 0.935 2.786 -12.180 -3.986 50.146 7 AA_DT8DA9:DT14DA15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DA 9 1_555 B DT 3 1_555 A DC 10 1_555 B DG 2 1_555 0.881 -1.175 3.483 3.169 -2.651 41.360 -1.350 -0.877 3.603 -3.743 -4.473 41.557 8 AA_DA9DC10:DG13DT14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DC 10 1_555 B DG 2 1_555 A DC 11 1_555 B DG 1 1_555 0.270 -0.266 3.699 0.469 -0.309 33.435 -0.404 -0.382 3.705 -0.538 -0.815 33.439 9 AA_DC10DC11:DG12DG13_BB A 10 ? B 13 ? A 11 ? B 12 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 'VARIAN UNITY PLUS' Varian 500 2 'VARIAN UNITY PLUS' Varian 600 # _atom_sites.entry_id 1AXL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_